Wall clock time and date at job start Tue Mar 31 2020 23:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47485 * 239.99441 * 2 1 3 5 5 C 1.50699 * 109.47009 * 60.00137 * 4 2 1 6 6 H 1.07996 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99966 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47004 * 90.00238 * 9 7 5 11 11 H 1.48505 * 109.47075 * 209.99750 * 9 7 5 12 12 H 1.48498 * 109.47237 * 329.99913 * 9 7 5 13 13 C 1.53001 * 109.46856 * 119.99332 * 2 1 3 14 14 N 1.46907 * 109.47441 * 300.00189 * 13 2 1 15 15 C 1.46893 * 110.99928 * 179.97438 * 14 13 2 16 16 C 1.50700 * 109.47043 * 179.97438 * 15 14 13 17 17 C 1.33329 * 125.94946 * 90.01983 * 16 15 14 18 18 N 1.32124 * 114.58022 * 179.75777 * 17 16 15 19 19 C 1.29687 * 116.86543 * 0.24636 * 18 17 16 20 20 N 1.38608 * 124.95276 * 180.02562 * 19 18 17 21 21 C 1.47014 * 111.00111 * 123.61604 * 20 19 18 22 22 C 1.53097 * 109.26012 * 177.61095 * 21 20 19 23 23 O 1.43015 * 109.25827 * 56.84863 * 22 21 20 24 24 C 1.43016 * 113.73704 * 301.33141 * 23 22 21 25 25 C 1.47015 * 110.99633 * 359.97438 * 20 19 18 26 26 S 1.70968 * 110.10148 * 0.02562 * 19 18 17 27 27 H 1.09001 * 109.47325 * 300.00679 * 1 2 3 28 28 H 1.09002 * 109.46920 * 60.00608 * 1 2 3 29 29 H 1.08997 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46788 * 299.99473 * 3 2 1 32 32 H 1.09001 * 109.47637 * 59.99512 * 3 2 1 33 33 H 1.08999 * 109.47241 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47128 * 300.00143 * 4 2 1 35 35 H 0.97001 * 120.00230 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47361 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47046 * 60.00292 * 13 2 1 38 38 H 1.00899 * 110.99709 * 303.95490 * 14 13 2 39 39 H 1.08997 * 109.47589 * 60.00369 * 15 14 13 40 40 H 1.09002 * 109.47266 * 299.99633 * 15 14 13 41 41 H 1.08002 * 122.71397 * 0.03494 * 17 16 15 42 42 H 1.08999 * 109.50459 * 297.54783 * 21 20 19 43 43 H 1.09002 * 109.50634 * 57.67620 * 21 20 19 44 44 H 1.08997 * 109.50343 * 296.91224 * 22 21 20 45 45 H 1.08994 * 109.54227 * 176.80295 * 22 21 20 46 46 H 1.08996 * 109.50774 * 298.73481 * 24 23 22 47 47 H 1.09005 * 109.54378 * 178.62666 * 24 23 22 48 48 H 1.09002 * 109.50233 * 302.31820 * 25 20 19 49 49 H 1.08989 * 109.50828 * 62.45509 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4825 -3.7318 8 7 2.6266 -1.5517 -3.8524 9 14 1.2473 0.3976 -5.2572 10 1 2.2254 1.4391 -5.6620 11 1 1.0821 -0.5820 -6.3610 12 1 -0.0607 1.0351 -4.9612 13 6 2.0399 -0.7211 1.2494 14 7 1.5502 -0.0285 2.4488 15 6 2.0207 -0.6949 3.6704 16 6 1.5001 0.0425 4.8772 17 6 0.3481 -0.1972 5.5042 18 7 0.1157 0.5835 6.5444 19 6 1.0164 1.4746 6.8212 20 7 0.9445 2.3770 7.8708 21 6 2.1203 2.2624 8.7457 22 6 2.0294 3.3144 9.8543 23 8 0.8032 3.1409 10.5697 24 6 -0.3626 3.2470 9.7482 25 6 -0.2960 2.1944 8.6384 26 16 2.3056 1.3740 5.7028 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7217 -1.2488 34 1 1.6768 -1.7490 -1.2490 35 1 2.8610 -1.8832 -4.7334 36 1 3.1299 -0.7216 1.2492 37 1 1.6766 -1.7488 1.2494 38 1 1.8197 0.9438 2.4402 39 1 3.1105 -0.6951 3.6876 40 1 1.6568 -1.7223 3.6871 41 1 -0.3375 -0.9703 5.1901 42 1 2.1480 1.2673 9.1896 43 1 3.0259 2.4264 8.1617 44 1 2.0558 4.3108 9.4134 45 1 2.8697 3.1966 10.5385 46 1 -0.4058 4.2415 9.3043 47 1 -1.2527 3.0803 10.3550 48 1 -1.1540 2.3090 7.9760 49 1 -0.3071 1.1983 9.0806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342314488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:37 Heat of formation + Delta-G solvation = 1.247209 kcal Electronic energy + Delta-G solvation = -26710.095904 eV Core-core repulsion = 22991.826167 eV Total energy + Delta-G solvation = -3718.269737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75256 -39.32356 -37.74527 -36.27198 -34.56692 -32.31084 -31.84011 -30.37247 -28.32684 -26.95625 -26.34767 -25.80991 -24.77417 -24.52148 -23.38184 -22.08496 -21.45120 -19.82206 -18.59036 -17.85881 -17.10806 -16.59312 -16.24854 -15.90429 -15.64175 -15.59514 -15.28963 -15.04286 -14.75282 -14.53933 -14.30006 -13.97128 -13.72298 -13.27358 -12.96787 -12.73426 -12.59361 -12.35511 -12.07197 -11.98773 -11.96132 -11.72045 -11.36771 -11.25790 -10.98362 -10.87393 -10.78552 -10.61190 -10.50292 -10.28799 -10.14975 -10.02801 -9.86475 -9.69929 -9.44496 -9.04201 -8.85443 -8.42048 -8.32250 -8.16629 -5.96842 -3.96904 0.52577 0.90527 1.53416 2.58035 3.07782 3.32128 3.32994 3.39720 3.42823 4.09537 4.31464 4.42007 4.45297 4.52574 4.56754 4.62055 4.76666 4.83598 4.92947 5.06857 5.10739 5.20158 5.36031 5.38982 5.43842 5.52372 5.62716 5.68205 5.76621 5.81848 5.96036 5.99173 6.20326 6.29793 6.38503 6.48073 6.56080 6.65129 6.76522 6.82142 7.14656 7.19098 7.25046 7.33393 7.52872 7.56562 7.69332 7.83988 8.03321 8.47656 9.08362 9.65917 11.14745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.001819 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.389034 B =15392.567962 C =15506.094014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.137 3.863 16 C -0.223 4.223 17 C 0.072 3.928 18 N -0.510 5.510 19 C 0.210 3.790 20 N -0.448 5.448 21 C 0.016 3.984 22 C 0.066 3.934 23 O -0.383 6.383 24 C 0.061 3.939 25 C 0.032 3.968 26 S 0.138 5.862 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.340 0.660 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 7.494 28.738 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.314 5.314 15 C 0.005 3.995 16 C -0.345 4.345 17 C -0.080 4.080 18 N -0.231 5.231 19 C -0.159 4.159 20 N -0.169 5.169 21 C -0.111 4.111 22 C -0.012 4.012 23 O -0.301 6.301 24 C -0.016 4.016 25 C -0.098 4.098 26 S 0.391 5.609 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.195 0.805 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.118 0.882 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.766 8.042 28.850 29.960 hybrid contribution 0.012 -0.642 -1.380 1.522 sum -0.754 7.400 27.470 28.459 Atomic orbital electron populations 1.21603 0.94935 1.00618 1.00220 1.20630 0.95922 0.94984 0.94277 1.21781 0.99701 0.96777 1.00470 1.19122 0.95882 0.95214 0.90129 1.21231 1.30774 1.11899 0.90594 0.92290 1.25021 0.95437 0.95122 0.99077 1.69965 1.37316 1.23157 1.23291 0.86656 0.79243 0.79398 0.83077 1.20838 1.21377 1.19913 1.22157 0.96462 0.98257 0.89034 1.60652 1.63682 1.06490 1.00541 1.20243 0.96672 0.97265 0.85307 1.25734 1.00538 1.02996 1.05236 1.21440 0.95738 0.99434 0.91342 1.66804 1.30484 1.05868 1.19901 1.24895 0.96231 0.94751 1.00024 1.59332 1.05201 1.43304 1.09111 1.23129 0.92254 1.00800 0.94945 1.22687 0.87718 0.97579 0.93189 1.88021 1.14043 1.93081 1.34957 1.22802 0.88772 0.98193 0.91860 1.22783 0.91517 0.99768 0.95684 1.83864 1.22312 1.32051 1.22704 0.93913 0.92655 0.94118 0.94063 0.91628 0.94870 0.96912 0.96631 0.93172 0.95649 0.91265 0.84112 0.94343 0.88890 0.80521 0.92085 0.88707 0.91632 0.87476 0.91874 0.87576 0.88221 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.78 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 14 N -0.68 -9.58 5.70 -115.06 -0.66 -10.23 16 15 C 0.14 1.60 6.21 -4.98 -0.03 1.57 16 16 C -0.22 -2.54 6.09 -36.02 -0.22 -2.76 16 17 C 0.07 0.85 11.24 -19.14 -0.22 0.63 16 18 N -0.51 -6.29 9.52 -15.21 -0.14 -6.44 16 19 C 0.21 2.32 6.73 -87.68 -0.59 1.73 16 20 N -0.45 -4.16 4.79 -175.07 -0.84 -5.00 16 21 C 0.02 0.12 5.49 -3.71 -0.02 0.10 16 22 C 0.07 0.39 7.01 37.21 0.26 0.65 16 23 O -0.38 -3.05 10.83 -35.23 -0.38 -3.43 16 24 C 0.06 0.40 7.01 37.21 0.26 0.67 16 25 C 0.03 0.27 4.97 -3.71 -0.02 0.25 16 26 S 0.14 1.41 22.36 -107.50 -2.40 -0.99 16 27 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 28 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 32 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.34 4.78 6.76 -39.29 -0.27 4.51 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.57 7.48 -51.93 -0.39 0.18 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.90 8.01 -51.93 -0.42 0.48 16 49 H 0.06 0.59 8.13 -51.94 -0.42 0.17 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -30.94 396.12 -11.57 -42.52 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.27 Total: 0.23 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.56 Total: -13.20 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.90 Total: -47.64 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -0.38 Total: -3.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.40 Total: -0.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.94 -11.57 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342314488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.762 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds