Wall clock time and date at job start Tue Mar 31 2020 23:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47485 * 239.99441 * 2 1 3 5 5 C 1.50699 * 109.47009 * 60.00137 * 4 2 1 6 6 H 1.07996 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99966 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47004 * 90.00238 * 9 7 5 11 11 H 1.48505 * 109.47075 * 209.99750 * 9 7 5 12 12 H 1.48498 * 109.47237 * 329.99913 * 9 7 5 13 13 C 1.53001 * 109.46856 * 119.99332 * 2 1 3 14 14 N 1.46907 * 109.47441 * 300.00189 * 13 2 1 15 15 C 1.46893 * 110.99928 * 179.97438 * 14 13 2 16 16 C 1.50700 * 109.47043 * 179.97438 * 15 14 13 17 17 C 1.33329 * 125.94946 * 90.01983 * 16 15 14 18 18 N 1.32124 * 114.58022 * 179.75777 * 17 16 15 19 19 C 1.29687 * 116.86543 * 0.24636 * 18 17 16 20 20 N 1.38608 * 124.95276 * 180.02562 * 19 18 17 21 21 C 1.47014 * 111.00111 * 123.61604 * 20 19 18 22 22 C 1.53097 * 109.26012 * 177.61095 * 21 20 19 23 23 O 1.43015 * 109.25827 * 56.84863 * 22 21 20 24 24 C 1.43016 * 113.73704 * 301.33141 * 23 22 21 25 25 C 1.47015 * 110.99633 * 359.97438 * 20 19 18 26 26 S 1.70968 * 110.10148 * 0.02562 * 19 18 17 27 27 H 1.09001 * 109.47325 * 300.00679 * 1 2 3 28 28 H 1.09002 * 109.46920 * 60.00608 * 1 2 3 29 29 H 1.08997 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46788 * 299.99473 * 3 2 1 32 32 H 1.09001 * 109.47637 * 59.99512 * 3 2 1 33 33 H 1.08999 * 109.47241 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47128 * 300.00143 * 4 2 1 35 35 H 0.97001 * 120.00230 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47361 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47046 * 60.00292 * 13 2 1 38 38 H 1.00899 * 110.99709 * 303.95490 * 14 13 2 39 39 H 1.08997 * 109.47589 * 60.00369 * 15 14 13 40 40 H 1.09002 * 109.47266 * 299.99633 * 15 14 13 41 41 H 1.08002 * 122.71397 * 0.03494 * 17 16 15 42 42 H 1.08999 * 109.50459 * 297.54783 * 21 20 19 43 43 H 1.09002 * 109.50634 * 57.67620 * 21 20 19 44 44 H 1.08997 * 109.50343 * 296.91224 * 22 21 20 45 45 H 1.08994 * 109.54227 * 176.80295 * 22 21 20 46 46 H 1.08996 * 109.50774 * 298.73481 * 24 23 22 47 47 H 1.09005 * 109.54378 * 178.62666 * 24 23 22 48 48 H 1.09002 * 109.50233 * 302.31820 * 25 20 19 49 49 H 1.08989 * 109.50828 * 62.45509 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4825 -3.7318 8 7 2.6266 -1.5517 -3.8524 9 14 1.2473 0.3976 -5.2572 10 1 2.2254 1.4391 -5.6620 11 1 1.0821 -0.5820 -6.3610 12 1 -0.0607 1.0351 -4.9612 13 6 2.0399 -0.7211 1.2494 14 7 1.5502 -0.0285 2.4488 15 6 2.0207 -0.6949 3.6704 16 6 1.5001 0.0425 4.8772 17 6 0.3481 -0.1972 5.5042 18 7 0.1157 0.5835 6.5444 19 6 1.0164 1.4746 6.8212 20 7 0.9445 2.3770 7.8708 21 6 2.1203 2.2624 8.7457 22 6 2.0294 3.3144 9.8543 23 8 0.8032 3.1409 10.5697 24 6 -0.3626 3.2470 9.7482 25 6 -0.2960 2.1944 8.6384 26 16 2.3056 1.3740 5.7028 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7217 -1.2488 34 1 1.6768 -1.7490 -1.2490 35 1 2.8610 -1.8832 -4.7334 36 1 3.1299 -0.7216 1.2492 37 1 1.6766 -1.7488 1.2494 38 1 1.8197 0.9438 2.4402 39 1 3.1105 -0.6951 3.6876 40 1 1.6568 -1.7223 3.6871 41 1 -0.3375 -0.9703 5.1901 42 1 2.1480 1.2673 9.1896 43 1 3.0259 2.4264 8.1617 44 1 2.0558 4.3108 9.4134 45 1 2.8697 3.1966 10.5385 46 1 -0.4058 4.2415 9.3043 47 1 -1.2527 3.0803 10.3550 48 1 -1.1540 2.3090 7.9760 49 1 -0.3071 1.1983 9.0806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342314488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:36 Heat of formation + Delta-G solvation = -18.646675 kcal Electronic energy + Delta-G solvation = -26710.958568 eV Core-core repulsion = 22991.826167 eV Total energy + Delta-G solvation = -3719.132401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46492 -40.05870 -39.17625 -37.02856 -35.87503 -34.26618 -32.38889 -31.40517 -29.26378 -28.70980 -27.89788 -26.98900 -25.74342 -25.36586 -24.54746 -23.58075 -22.08202 -20.60815 -19.66627 -19.15169 -18.32541 -17.89383 -17.15991 -16.79619 -16.55783 -16.44279 -16.18637 -15.99563 -15.89725 -15.72595 -15.36281 -15.11736 -14.79724 -14.61581 -14.30129 -13.99209 -13.86219 -13.49794 -13.44769 -13.16749 -12.79256 -12.70067 -12.67386 -12.51810 -12.44761 -12.25176 -12.16312 -12.10783 -11.90461 -11.79530 -11.37949 -11.31103 -10.87247 -10.80338 -10.69428 -10.61922 -10.49626 -10.24956 -9.37165 -9.16775 -8.13509 -6.20013 -0.31384 0.09597 0.69470 1.40936 1.41505 1.52070 1.73738 2.37217 2.44049 2.84261 3.20391 3.32861 3.43238 3.74261 3.84915 3.87419 4.01493 4.11816 4.12450 4.18126 4.19875 4.27557 4.38629 4.39496 4.63796 4.65239 4.71726 4.76434 4.78120 4.78891 4.85658 4.89689 4.96550 5.02668 5.07684 5.20969 5.22061 5.34285 5.52592 5.54845 5.59043 5.61397 5.64923 5.87544 5.93489 6.01099 6.06523 6.37466 6.41694 6.70289 6.95030 7.47035 8.98543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.001819 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.389034 B =15392.567962 C =15506.094014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.064 0.936 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.082 3.918 14 N -0.680 5.680 15 C 0.141 3.859 16 C -0.234 4.234 17 C 0.065 3.935 18 N -0.534 5.534 19 C 0.203 3.797 20 N -0.452 5.452 21 C 0.016 3.984 22 C 0.065 3.935 23 O -0.399 6.399 24 C 0.065 3.935 25 C 0.035 3.965 26 S 0.168 5.832 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.063 0.937 33 H -0.014 1.014 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.342 0.658 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.184 0.816 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.129 0.871 46 H 0.069 0.931 47 H 0.123 0.877 48 H 0.091 0.909 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 9.202 30.106 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.181 4.181 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.189 1.189 13 C -0.047 4.047 14 N -0.312 5.312 15 C 0.010 3.990 16 C -0.357 4.357 17 C -0.086 4.086 18 N -0.255 5.255 19 C -0.165 4.165 20 N -0.174 5.174 21 C -0.111 4.111 22 C -0.012 4.012 23 O -0.317 6.317 24 C -0.012 4.012 25 C -0.094 4.094 26 S 0.420 5.580 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.004 0.996 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.201 0.799 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.147 0.853 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.109 0.891 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.903 9.772 30.243 31.796 hybrid contribution 0.074 -1.162 -1.720 2.077 sum -0.829 8.610 28.523 29.806 Atomic orbital electron populations 1.21502 0.94461 1.00177 1.00304 1.20490 0.96173 0.95535 0.93321 1.21696 0.99599 0.95759 1.01021 1.19000 0.94069 0.94157 0.92498 1.21617 1.30173 1.11866 0.91514 0.91757 1.25907 0.95803 0.95934 1.02524 1.70101 1.38851 1.24827 1.23986 0.85591 0.79049 0.78237 0.79050 1.20094 1.21289 1.18875 1.21849 0.96197 0.97766 0.88867 1.60569 1.63735 1.06507 1.00413 1.20222 0.97172 0.97406 0.84233 1.25676 1.00807 1.03803 1.05375 1.21619 0.96088 0.99604 0.91330 1.66834 1.31439 1.06700 1.20517 1.25231 0.96233 0.94468 1.00574 1.59427 1.06238 1.42434 1.09328 1.23245 0.91783 1.01008 0.95111 1.22861 0.87740 0.97396 0.93189 1.88004 1.14845 1.93130 1.35758 1.22861 0.89182 0.97737 0.91429 1.22759 0.91014 0.99785 0.95863 1.83698 1.21330 1.31094 1.21829 0.91733 0.94455 0.94849 0.94192 0.93497 0.91804 0.99550 0.99527 0.93197 0.95796 0.91727 0.83887 0.93473 0.88276 0.79925 0.92728 0.87559 0.90921 0.85278 0.91253 0.85963 0.89100 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 3 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.28 7.65 25.60 0.20 -28.08 16 6 H 0.06 3.41 5.68 -2.91 -0.02 3.40 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.08 2.65 4.65 86.30 0.40 3.06 16 14 N -0.68 -17.82 5.70 -517.94 -2.95 -20.77 16 15 C 0.14 3.03 6.21 85.56 0.53 3.56 16 16 C -0.23 -4.95 6.09 24.58 0.15 -4.80 16 17 C 0.07 1.47 11.24 83.54 0.94 2.40 16 18 N -0.53 -12.74 9.52 -202.02 -1.92 -14.66 16 19 C 0.20 4.25 6.73 179.32 1.21 5.46 16 20 N -0.45 -7.83 4.79 -707.81 -3.39 -11.22 16 21 C 0.02 0.19 5.49 86.31 0.47 0.67 16 22 C 0.06 0.63 7.01 72.01 0.50 1.13 16 23 O -0.40 -5.65 10.83 -148.98 -1.61 -7.27 16 24 C 0.06 0.77 7.01 72.02 0.50 1.27 16 25 C 0.03 0.56 4.97 86.31 0.43 0.99 16 26 S 0.17 3.11 22.36 -56.49 -1.26 1.85 16 27 H 0.06 2.15 7.60 -2.39 -0.02 2.13 16 28 H 0.04 1.52 6.62 -2.39 -0.02 1.50 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 32 H 0.06 1.87 6.57 -2.39 -0.02 1.86 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.34 8.74 6.76 -89.69 -0.61 8.13 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.06 7.48 -2.39 -0.02 1.04 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.09 1.60 8.01 -2.39 -0.02 1.58 16 49 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 Total: -1.00 -66.74 396.12 -1.47 -68.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.33 Total: 15.45 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 7.04 Total: -21.44 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -7.98 Total: -103.29 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -1.61 Total: -7.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.26 Total: 1.85 kcal Total: -66.74 -1.47 -68.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342314488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.562 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds