Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00351 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47397 * 89.99809 * 11 10 8 13 13 H 1.08005 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00131 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99720 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00161 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46823 * 90.00382 * 16 14 12 18 18 H 1.48497 * 109.47481 * 210.00116 * 16 14 12 19 19 H 1.48499 * 109.47058 * 330.00656 * 16 14 12 20 20 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 21 21 C 1.52999 * 109.47382 * 89.99948 * 20 10 8 22 22 C 1.53004 * 109.47275 * 180.02562 * 21 20 10 23 23 N 1.46895 * 109.46947 * 180.02562 * 22 21 20 24 24 C 1.46903 * 110.99705 * 169.99746 * 23 22 21 25 25 C 1.46900 * 110.99920 * 293.94898 * 23 22 21 26 26 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 30 30 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 33 33 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 34 34 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 35 35 H 1.09001 * 109.47140 * 209.99805 * 11 10 8 36 36 H 1.09000 * 109.47270 * 329.99852 * 11 10 8 37 37 H 0.96999 * 119.99714 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47334 * 210.00488 * 20 10 8 39 39 H 1.09011 * 109.46707 * 330.00026 * 20 10 8 40 40 H 1.09005 * 109.46719 * 300.00389 * 21 20 10 41 41 H 1.08994 * 109.46997 * 60.00266 * 21 20 10 42 42 H 1.09004 * 109.46546 * 299.99938 * 22 21 20 43 43 H 1.08999 * 109.46927 * 59.99604 * 22 21 20 44 44 H 1.08997 * 109.46801 * 59.99848 * 24 23 22 45 45 H 1.09001 * 109.46880 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47336 * 299.99872 * 24 23 22 47 47 H 1.09002 * 109.47101 * 60.00489 * 25 23 22 48 48 H 1.09000 * 109.46872 * 179.97438 * 25 23 22 49 49 H 1.08991 * 109.47296 * 300.00408 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 5.7518 -3.5959 -3.9015 12 6 6.6676 -2.4794 -4.3324 13 1 7.5202 -2.2151 -3.7243 14 6 6.4166 -1.7946 -5.5025 15 7 7.2161 -0.8206 -5.8787 16 14 4.9417 -2.2512 -6.5539 17 1 3.7636 -1.4545 -6.1266 18 1 5.2423 -1.9645 -7.9796 19 1 4.6466 -3.6974 -6.3913 20 6 7.1819 -5.2719 -2.6429 21 6 6.4173 -6.5971 -2.6482 22 6 7.4118 -7.7598 -2.6546 23 7 6.6776 -9.0321 -2.6604 24 6 7.5842 -10.1619 -2.9048 25 6 5.9332 -9.2160 -1.4074 26 7 2.2199 -1.1083 -0.0064 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5184 29 1 -0.3633 0.8926 -0.5093 30 1 1.8392 2.1308 0.0005 31 1 5.3966 -1.8274 0.5002 32 1 4.0439 -2.9843 0.4958 33 1 3.9003 -2.8071 -1.9733 34 1 5.2530 -1.6502 -1.9690 35 1 5.7432 -4.3739 -4.6649 36 1 4.7425 -3.2068 -3.7679 37 1 7.0397 -0.3390 -6.7021 38 1 7.8074 -5.2097 -3.5334 39 1 7.8099 -5.2183 -1.7534 40 1 5.7919 -6.6593 -1.7576 41 1 5.7895 -6.6507 -3.5376 42 1 8.0375 -7.6977 -3.5451 43 1 8.0394 -7.7060 -1.7651 44 1 8.3397 -10.1979 -2.1200 45 1 7.0148 -11.0914 -2.9035 46 1 8.0707 -10.0348 -3.8718 47 1 5.2194 -8.4012 -1.2859 48 1 5.3985 -10.1653 -1.4385 49 1 6.6289 -9.2177 -0.5684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345700289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = 0.633985 kcal Electronic energy + Delta-G solvation = -27166.214566 eV Core-core repulsion = 23447.918238 eV Total energy + Delta-G solvation = -3718.296328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86393 -39.27728 -37.63657 -35.38615 -34.01799 -32.83573 -31.76243 -30.76069 -28.03279 -27.67628 -27.62746 -26.71656 -25.08951 -22.74100 -22.60805 -21.54363 -20.65042 -19.60682 -18.27771 -17.58714 -17.07172 -16.48527 -15.88878 -15.50819 -15.25481 -15.08738 -14.93246 -14.71673 -14.56071 -14.17722 -13.86173 -13.59306 -13.33284 -12.87516 -12.74026 -12.68320 -12.50545 -12.42966 -12.21216 -12.10533 -12.04721 -11.83483 -11.67045 -11.43284 -11.37681 -11.29597 -11.23823 -10.84890 -10.78270 -10.67391 -10.31446 -10.20668 -9.64667 -9.54710 -9.32206 -9.17287 -8.73903 -8.59178 -8.39058 -7.79553 -6.23660 -4.25521 0.77881 1.46728 1.85682 2.82422 3.17201 3.25401 3.27159 3.29301 3.68519 4.01117 4.17955 4.25565 4.91328 5.03823 5.07584 5.10682 5.12775 5.22705 5.24116 5.32387 5.34449 5.36778 5.43252 5.49186 5.54445 5.59748 5.64175 5.64564 5.75245 5.75845 5.83387 5.87705 5.95367 5.97329 6.11966 6.14080 6.31542 6.35319 6.41364 6.47726 6.56637 6.68597 6.99586 7.01990 7.30946 7.42572 7.83719 8.09004 8.37913 8.79185 8.88335 9.35948 10.88783 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.003393 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.935310 B = 8250.935963 C =10426.705917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 C -0.275 4.275 4 S 0.129 5.871 5 C 0.066 3.934 6 C -0.027 4.027 7 C -0.132 4.132 8 C 0.523 3.477 9 O -0.572 6.572 10 N -0.587 5.587 11 C 0.207 3.793 12 C -0.542 4.542 13 H 0.079 0.921 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.868 3.132 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.122 3.878 21 C -0.130 4.130 22 C 0.058 3.942 23 N -0.549 5.549 24 C 0.025 3.975 25 C 0.022 3.978 26 N -0.476 5.476 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.173 0.827 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -4.930 9.518 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.414 4.414 4 S 0.385 5.615 5 C -0.212 4.212 6 C -0.069 4.069 7 C -0.173 4.173 8 C 0.312 3.688 9 O -0.453 6.453 10 N -0.317 5.317 11 C 0.086 3.914 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.694 3.306 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.002 4.002 21 C -0.169 4.169 22 C -0.070 4.070 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 N -0.191 5.191 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.191 0.809 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.514 -4.981 9.499 12.549 hybrid contribution -1.055 0.057 -0.286 1.094 sum -7.569 -4.925 9.213 12.900 Atomic orbital electron populations 1.20333 0.87376 1.03258 1.02657 1.20298 0.98170 0.86666 1.01577 1.26778 0.95557 1.03801 1.15233 1.84163 1.06836 1.03171 1.67346 1.27126 0.93979 0.98462 1.01650 1.20037 0.95442 0.93510 0.97863 1.21622 0.99929 0.99372 0.96407 1.20274 0.81833 0.83428 0.83299 1.90603 1.60254 1.62779 1.31661 1.47855 1.43838 1.32874 1.07092 1.19842 0.95412 0.94878 0.81291 1.21365 1.12727 1.15836 1.08076 0.90314 1.24853 0.96165 0.94455 0.97081 1.69887 1.37423 1.21734 1.23652 0.86975 0.83444 0.79784 0.80395 1.19866 1.20838 1.18724 1.21232 0.91506 0.84541 1.02912 1.21959 0.98729 0.93285 1.02894 1.22081 0.95473 0.88524 1.00917 1.61978 1.27878 1.02454 1.34927 1.22368 0.95312 0.93857 1.00806 1.22425 0.98240 1.02351 0.89603 1.66144 1.04564 1.31492 1.16871 0.90874 0.90609 0.90900 0.80923 0.88951 0.88367 0.88844 0.87246 0.94666 0.95232 0.92353 0.90171 0.90849 0.91763 0.91060 0.90561 0.94692 0.95847 0.91628 0.91338 0.90881 0.91776 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.31 36.01 0.37 -0.39 16 2 C 0.07 0.88 6.74 -84.22 -0.57 0.31 16 3 C -0.27 -3.37 11.13 29.12 0.32 -3.05 16 4 S 0.13 1.74 23.18 -107.50 -2.49 -0.75 16 5 C 0.07 1.01 6.64 -13.46 -0.09 0.92 16 6 C -0.03 -0.42 5.09 -27.88 -0.14 -0.57 16 7 C -0.13 -2.32 4.23 -27.88 -0.12 -2.44 16 8 C 0.52 10.25 7.67 -10.99 -0.08 10.17 16 9 O -0.57 -11.95 15.56 5.55 0.09 -11.86 16 10 N -0.59 -11.65 2.46 -175.06 -0.43 -12.08 16 11 C 0.21 4.48 4.03 -5.20 -0.02 4.46 16 12 C -0.54 -13.93 9.84 -34.44 -0.34 -14.27 16 13 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.89 -25.48 13.96 55.43 0.77 -24.70 16 16 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 20 C 0.12 2.13 5.41 -4.04 -0.02 2.11 16 21 C -0.13 -1.98 5.46 -26.73 -0.15 -2.13 16 22 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 23 N -0.55 -6.89 5.02 -251.26 -1.26 -8.15 16 24 C 0.02 0.25 9.57 60.07 0.57 0.83 16 25 C 0.02 0.25 9.32 60.06 0.56 0.81 16 26 N -0.48 -7.49 10.53 -8.06 -0.08 -7.57 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 33 H 0.09 1.60 7.40 -51.93 -0.38 1.22 16 34 H 0.11 2.06 8.00 -51.93 -0.42 1.65 16 35 H 0.04 0.76 7.13 -51.93 -0.37 0.39 16 36 H 0.03 0.63 5.87 -51.93 -0.30 0.32 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.07 1.31 7.42 -51.92 -0.39 0.92 16 40 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 43 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 48 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 49 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -30.40 411.72 -10.14 -40.54 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.45 Total: 3.77 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.18 Total: -0.49 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -1.00 Total: -52.51 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.49 Total: -0.75 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.40 -10.14 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345700289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.173 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds