Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00351 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47397 * 89.99809 * 11 10 8 13 13 H 1.08005 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00131 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99720 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00161 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46823 * 90.00382 * 16 14 12 18 18 H 1.48497 * 109.47481 * 210.00116 * 16 14 12 19 19 H 1.48499 * 109.47058 * 330.00656 * 16 14 12 20 20 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 21 21 C 1.52999 * 109.47382 * 89.99948 * 20 10 8 22 22 C 1.53004 * 109.47275 * 180.02562 * 21 20 10 23 23 N 1.46895 * 109.46947 * 180.02562 * 22 21 20 24 24 C 1.46903 * 110.99705 * 169.99746 * 23 22 21 25 25 C 1.46900 * 110.99920 * 293.94898 * 23 22 21 26 26 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 30 30 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 33 33 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 34 34 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 35 35 H 1.09001 * 109.47140 * 209.99805 * 11 10 8 36 36 H 1.09000 * 109.47270 * 329.99852 * 11 10 8 37 37 H 0.96999 * 119.99714 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47334 * 210.00488 * 20 10 8 39 39 H 1.09011 * 109.46707 * 330.00026 * 20 10 8 40 40 H 1.09005 * 109.46719 * 300.00389 * 21 20 10 41 41 H 1.08994 * 109.46997 * 60.00266 * 21 20 10 42 42 H 1.09004 * 109.46546 * 299.99938 * 22 21 20 43 43 H 1.08999 * 109.46927 * 59.99604 * 22 21 20 44 44 H 1.08997 * 109.46801 * 59.99848 * 24 23 22 45 45 H 1.09001 * 109.46880 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47336 * 299.99872 * 24 23 22 47 47 H 1.09002 * 109.47101 * 60.00489 * 25 23 22 48 48 H 1.09000 * 109.46872 * 179.97438 * 25 23 22 49 49 H 1.08991 * 109.47296 * 300.00408 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 5.7518 -3.5959 -3.9015 12 6 6.6676 -2.4794 -4.3324 13 1 7.5202 -2.2151 -3.7243 14 6 6.4166 -1.7946 -5.5025 15 7 7.2161 -0.8206 -5.8787 16 14 4.9417 -2.2512 -6.5539 17 1 3.7636 -1.4545 -6.1266 18 1 5.2423 -1.9645 -7.9796 19 1 4.6466 -3.6974 -6.3913 20 6 7.1819 -5.2719 -2.6429 21 6 6.4173 -6.5971 -2.6482 22 6 7.4118 -7.7598 -2.6546 23 7 6.6776 -9.0321 -2.6604 24 6 7.5842 -10.1619 -2.9048 25 6 5.9332 -9.2160 -1.4074 26 7 2.2199 -1.1083 -0.0064 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5184 29 1 -0.3633 0.8926 -0.5093 30 1 1.8392 2.1308 0.0005 31 1 5.3966 -1.8274 0.5002 32 1 4.0439 -2.9843 0.4958 33 1 3.9003 -2.8071 -1.9733 34 1 5.2530 -1.6502 -1.9690 35 1 5.7432 -4.3739 -4.6649 36 1 4.7425 -3.2068 -3.7679 37 1 7.0397 -0.3390 -6.7021 38 1 7.8074 -5.2097 -3.5334 39 1 7.8099 -5.2183 -1.7534 40 1 5.7919 -6.6593 -1.7576 41 1 5.7895 -6.6507 -3.5376 42 1 8.0375 -7.6977 -3.5451 43 1 8.0394 -7.7060 -1.7651 44 1 8.3397 -10.1979 -2.1200 45 1 7.0148 -11.0914 -2.9035 46 1 8.0707 -10.0348 -3.8718 47 1 5.2194 -8.4012 -1.2859 48 1 5.3985 -10.1653 -1.4385 49 1 6.6289 -9.2177 -0.5684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345700289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = -17.937826 kcal Electronic energy + Delta-G solvation = -27167.019900 eV Core-core repulsion = 23447.918238 eV Total energy + Delta-G solvation = -3719.101663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10666 -40.67226 -38.66891 -36.96557 -35.32255 -34.66256 -33.17939 -31.86893 -29.82475 -28.60203 -28.49523 -27.97482 -26.30666 -24.47117 -23.87222 -22.74086 -21.77326 -20.66689 -19.87698 -19.06718 -18.71271 -17.94641 -17.31777 -16.71755 -16.55917 -16.26071 -16.11349 -15.89115 -15.77005 -15.57899 -15.01257 -14.88780 -14.71536 -14.35109 -13.98373 -13.88628 -13.80849 -13.56641 -13.31432 -13.27379 -13.24467 -13.01403 -12.92936 -12.77328 -12.61745 -12.44715 -12.42073 -12.21463 -12.20683 -12.15115 -11.98612 -11.68772 -11.51486 -10.85964 -10.73708 -10.63687 -10.37767 -9.63946 -9.45974 -9.33251 -8.29722 -6.36448 -0.29080 0.40995 0.81498 1.38729 1.41212 1.49549 1.69032 1.76456 2.22730 2.33741 3.00753 3.04912 3.08506 3.64246 3.91763 3.99191 4.05635 4.09321 4.16567 4.22453 4.29134 4.37070 4.40725 4.44707 4.50032 4.57690 4.62777 4.65477 4.70216 4.73615 4.78519 4.79207 4.80214 4.85787 4.90502 4.99436 5.01004 5.01302 5.04124 5.13956 5.27433 5.38294 5.45027 5.68845 6.03961 6.10732 6.18406 6.58472 6.69859 6.77225 7.21827 7.32908 8.86240 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.003393 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.935310 B = 8250.935963 C =10426.705917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 C -0.260 4.260 4 S 0.129 5.871 5 C 0.042 3.958 6 C -0.017 4.017 7 C -0.123 4.123 8 C 0.519 3.481 9 O -0.586 6.586 10 N -0.593 5.593 11 C 0.217 3.783 12 C -0.538 4.538 13 H 0.034 0.966 14 C 0.025 3.975 15 N -0.939 5.939 16 Si 0.932 3.068 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.240 1.240 20 C 0.120 3.880 21 C -0.114 4.114 22 C 0.064 3.936 23 N -0.563 5.563 24 C 0.024 3.976 25 C 0.023 3.977 26 N -0.494 5.494 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.206 0.794 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -5.675 9.330 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.399 4.399 4 S 0.384 5.616 5 C -0.235 4.235 6 C -0.058 4.058 7 C -0.165 4.165 8 C 0.308 3.692 9 O -0.468 6.468 10 N -0.323 5.323 11 C 0.095 3.905 12 C -0.577 4.577 13 H 0.053 0.947 14 C -0.175 4.175 15 N -0.578 5.578 16 Si 0.755 3.245 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.163 1.163 20 C -0.003 4.003 21 C -0.153 4.153 22 C -0.065 4.065 23 N -0.287 5.287 24 C -0.123 4.123 25 C -0.125 4.125 26 N -0.211 5.211 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.223 0.777 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.624 -5.761 9.331 13.951 hybrid contribution -0.330 0.342 -0.153 0.499 sum -8.954 -5.419 9.178 13.921 Atomic orbital electron populations 1.20438 0.84960 1.04091 1.03822 1.20871 0.99805 0.86334 1.01881 1.27196 0.94306 1.05097 1.13306 1.84146 1.08296 1.02118 1.67025 1.26971 0.94042 0.99057 1.03438 1.19860 0.95738 0.93900 0.96309 1.21538 0.99303 0.97777 0.97854 1.20628 0.81933 0.83642 0.82983 1.90587 1.60867 1.63327 1.32020 1.47928 1.44218 1.33467 1.06639 1.19645 0.94927 0.93762 0.82178 1.21483 1.11895 1.16851 1.07433 0.94729 1.25677 0.99118 0.94199 0.98458 1.70036 1.39828 1.23439 1.24508 0.85948 0.79641 0.80832 0.78123 1.19053 1.20977 1.16278 1.21335 0.91422 0.85094 1.02456 1.21768 0.98631 0.92798 1.02086 1.21980 0.94868 0.88362 1.01263 1.61975 1.28515 1.02719 1.35458 1.22430 0.95280 0.93434 1.01187 1.22430 0.98037 1.02750 0.89318 1.66156 1.04844 1.33084 1.16967 0.89481 0.91245 0.88609 0.77689 0.88948 0.88623 0.88292 0.88840 0.93619 0.93930 0.92286 0.90386 0.91498 0.92709 0.91544 0.89879 0.94723 0.95399 0.90219 0.90863 0.92154 0.90055 0.95626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.31 71.24 0.73 -0.55 16 2 C 0.04 1.07 6.74 41.52 0.28 1.35 16 3 C -0.26 -5.81 11.13 66.78 0.74 -5.07 16 4 S 0.13 3.39 23.18 -56.49 -1.31 2.08 16 5 C 0.04 1.28 6.64 88.52 0.59 1.87 16 6 C -0.02 -0.53 5.09 29.85 0.15 -0.38 16 7 C -0.12 -4.39 4.23 29.85 0.13 -4.26 16 8 C 0.52 20.61 7.67 87.66 0.67 21.28 16 9 O -0.59 -24.82 15.56 -3.05 -0.05 -24.87 16 10 N -0.59 -23.70 2.46 -826.15 -2.03 -25.73 16 11 C 0.22 9.27 4.03 85.63 0.35 9.62 16 12 C -0.54 -28.19 9.84 25.60 0.25 -27.94 16 13 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 14 C 0.02 1.33 5.47 84.65 0.46 1.79 16 15 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 16 Si 0.93 39.98 27.47 68.60 1.88 41.86 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 20 C 0.12 4.23 5.41 86.38 0.47 4.70 16 21 C -0.11 -3.42 5.46 30.60 0.17 -3.25 16 22 C 0.06 1.62 4.96 86.31 0.43 2.04 16 23 N -0.56 -13.22 5.02 -948.86 -4.76 -17.99 16 24 C 0.02 0.44 9.57 127.69 1.22 1.67 16 25 C 0.02 0.49 9.32 127.69 1.19 1.68 16 26 N -0.49 -15.19 10.53 -179.40 -1.89 -17.08 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.20 8.12 -2.38 -0.02 1.18 16 30 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.09 2.84 8.10 -2.39 -0.02 2.82 16 32 H 0.10 3.02 8.10 -2.39 -0.02 3.00 16 33 H 0.10 3.37 7.40 -2.39 -0.02 3.36 16 34 H 0.09 3.63 8.00 -2.39 -0.02 3.61 16 35 H 0.05 1.89 7.13 -2.39 -0.02 1.87 16 36 H 0.04 1.74 5.87 -2.39 -0.01 1.72 16 37 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 39 H 0.07 2.43 7.42 -2.38 -0.02 2.41 16 40 H 0.05 1.75 6.55 -2.38 -0.02 1.74 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 1.98 8.06 -2.38 -0.02 1.96 16 43 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 44 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 46 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 47 H 0.06 1.44 6.47 -2.39 -0.02 1.43 16 48 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 49 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -66.08 411.72 0.84 -65.24 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.86 Total: 26.60 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 7.83 Total: 4.56 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -8.38 Total: -115.48 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 1.88 Total: 41.86 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -66.08 0.84 -65.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345700289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds