Wall clock time and date at job start Tue Mar 31 2020 22:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33641 * 126.03942 * 90.02170 * 3 2 1 5 5 N 1.31777 * 114.49765 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12847 * 359.97438 * 5 4 3 7 7 C 1.50704 * 124.91576 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47004 * 89.98015 * 7 6 5 9 9 C 1.46903 * 110.99820 * 293.95114 * 8 7 6 10 10 C 1.50702 * 109.46987 * 69.99857 * 9 8 7 11 11 H 1.08002 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99821 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00006 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99779 * 0.02562 * 12 10 9 15 15 H 1.48489 * 109.47118 * 89.99820 * 14 12 10 16 16 H 1.48501 * 109.46699 * 209.99903 * 14 12 10 17 17 H 1.48498 * 109.46964 * 329.99361 * 14 12 10 18 18 C 1.46902 * 110.99800 * 169.99690 * 8 7 6 19 19 C 1.53002 * 109.46940 * 189.99380 * 18 8 7 20 20 N 1.46902 * 109.46940 * 179.97438 * 19 18 8 21 21 C 1.47017 * 111.00018 * 293.63745 * 20 19 18 22 22 C 1.53098 * 109.25592 * 177.60751 * 21 20 19 23 23 O 1.43013 * 109.25791 * 56.84800 * 22 21 20 24 24 C 1.43020 * 113.74020 * 301.33324 * 23 22 21 25 25 C 1.47011 * 110.99500 * 170.00279 * 20 19 18 26 26 S 1.70982 * 110.16535 * 359.72804 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 122.74954 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46890 * 209.97400 * 7 6 5 34 34 H 1.08998 * 109.47211 * 329.97713 * 7 6 5 35 35 H 1.08998 * 109.46665 * 190.00453 * 9 8 7 36 36 H 1.09007 * 109.46974 * 310.00334 * 9 8 7 37 37 H 0.96999 * 119.99782 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47251 * 309.99622 * 18 8 7 39 39 H 1.09005 * 109.46673 * 69.99809 * 18 8 7 40 40 H 1.08997 * 109.47239 * 300.00729 * 19 18 8 41 41 H 1.09006 * 109.46425 * 60.00329 * 19 18 8 42 42 H 1.09000 * 109.50374 * 297.54367 * 21 20 19 43 43 H 1.09000 * 109.50661 * 57.67425 * 21 20 19 44 44 H 1.09000 * 109.50597 * 296.92011 * 22 21 20 45 45 H 1.08999 * 109.53993 * 176.80639 * 22 21 20 46 46 H 1.09003 * 109.50444 * 298.73027 * 24 23 22 47 47 H 1.09003 * 109.53939 * 178.62742 * 24 23 22 48 48 H 1.08996 * 109.51184 * 302.32505 * 25 20 19 49 49 H 1.08997 * 109.50600 * 62.42038 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8398 3.7065 -0.4258 7 6 3.3137 5.0473 -0.9246 8 7 4.7736 5.0214 -1.0867 9 6 5.4448 4.8744 0.2117 10 6 5.2042 3.4865 0.7473 11 1 4.6123 2.7837 0.1797 12 6 5.7407 3.1135 1.9614 13 7 5.5312 1.9021 2.4286 14 14 6.7652 4.3288 2.9427 15 1 5.8808 5.1011 3.8518 16 1 7.7755 3.5915 3.7433 17 1 7.4538 5.2598 2.0130 18 6 5.2463 6.2207 -1.7910 19 6 6.7207 6.0469 -2.1611 20 7 7.1934 7.2459 -2.8659 21 6 6.5270 7.3882 -4.1687 22 6 7.0033 8.6785 -4.8412 23 8 8.4280 8.6492 -4.9621 24 6 9.1092 8.5120 -3.7120 25 6 8.6543 7.2201 -3.0281 26 16 2.3849 2.3956 -1.4248 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1653 1.7934 2.0874 33 1 2.8454 5.2640 -1.8847 34 1 3.0416 5.8195 -0.2051 35 1 6.5156 5.0355 0.0873 36 1 5.0459 5.6083 0.9121 37 1 5.9084 1.6399 3.2829 38 1 4.6588 6.3650 -2.6977 39 1 5.1344 7.0903 -1.1433 40 1 7.3083 5.9025 -1.2544 41 1 6.8326 5.1773 -2.8088 42 1 6.7761 6.5353 -4.8000 43 1 5.4477 7.4309 -4.0227 44 1 6.7070 9.5352 -4.2359 45 1 6.5556 8.7601 -5.8316 46 1 8.8741 9.3639 -3.0740 47 1 10.1847 8.4729 -3.8853 48 1 9.1278 7.1401 -2.0496 49 1 8.9374 6.3641 -3.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346163565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:45 Heat of formation + Delta-G solvation = 33.814290 kcal Electronic energy + Delta-G solvation = -28026.924235 eV Core-core repulsion = 24310.066713 eV Total energy + Delta-G solvation = -3716.857522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.65499 -39.03213 -37.21651 -35.49588 -33.75384 -32.35815 -31.32981 -30.40263 -28.79073 -27.84712 -26.47623 -24.72207 -24.11687 -23.04534 -22.20106 -21.76294 -20.47931 -19.87891 -18.45438 -17.28715 -17.00302 -16.53169 -16.22793 -15.31756 -15.16555 -15.08397 -14.87083 -14.55100 -14.45788 -13.98264 -13.66014 -13.49581 -13.41363 -13.33612 -13.10243 -12.71642 -12.36244 -12.24946 -11.95248 -11.81442 -11.72813 -11.49289 -11.44596 -11.39172 -11.15829 -11.01951 -10.79620 -10.62446 -10.53197 -10.28915 -10.03386 -9.76920 -9.76272 -9.13837 -8.52948 -8.49971 -8.38663 -8.10254 -7.72321 -7.54560 -5.91134 -3.80255 1.63670 2.26097 2.66945 3.33772 3.39830 3.42325 3.60999 3.77143 3.98659 4.52066 4.73743 4.83275 4.92735 4.94508 5.04471 5.11270 5.18856 5.30973 5.33890 5.35755 5.42319 5.43643 5.51418 5.54391 5.58143 5.63346 5.71112 5.75335 5.85608 5.89647 5.96082 6.04778 6.07807 6.14442 6.16811 6.20760 6.26685 6.41318 6.64485 6.73341 6.92751 6.93304 7.00486 7.03803 7.16305 7.59840 7.78728 7.96336 8.71000 8.89001 9.11997 9.70264 11.20779 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003402 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.009625 B = 8229.107229 C =10025.544070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.038 4.038 3 C -0.234 4.234 4 C 0.075 3.925 5 N -0.406 5.406 6 C 0.077 3.923 7 C 0.146 3.854 8 N -0.526 5.526 9 C 0.160 3.840 10 C -0.483 4.483 11 H 0.087 0.913 12 C 0.076 3.924 13 N -0.896 5.896 14 Si 0.864 3.136 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.272 1.272 18 C 0.063 3.937 19 C 0.060 3.940 20 N -0.539 5.539 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 S 0.064 5.936 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.028 0.972 36 H -0.012 1.012 37 H 0.258 0.742 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 6.703 -11.418 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.355 4.355 4 C -0.077 4.077 5 N -0.118 5.118 6 C -0.201 4.201 7 C 0.015 3.985 8 N -0.252 5.252 9 C 0.034 3.966 10 C -0.522 4.522 11 H 0.105 0.895 12 C -0.125 4.125 13 N -0.536 5.536 14 Si 0.693 3.307 15 H -0.206 1.206 16 H -0.217 1.217 17 H -0.197 1.197 18 C -0.066 4.066 19 C -0.068 4.068 20 N -0.264 5.264 21 C -0.113 4.113 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 S 0.318 5.682 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.169 6.869 -12.107 14.276 hybrid contribution 0.713 0.085 2.052 2.174 sum -2.457 6.954 -10.055 12.470 Atomic orbital electron populations 1.21784 0.95215 1.01144 1.02051 1.19830 0.95096 0.90055 1.02840 1.25605 1.13266 1.01706 0.94918 1.21379 0.98169 0.89024 0.99108 1.66267 1.09763 1.17856 1.17863 1.26088 1.03886 0.99526 0.90646 1.20298 0.89159 0.90305 0.98759 1.61983 1.03174 1.35964 1.24061 1.20324 0.93832 0.98197 0.84216 1.21191 1.31351 0.95955 1.03750 0.89482 1.24700 0.96065 0.94625 0.97091 1.69863 1.45911 1.18052 1.19768 0.87045 0.80760 0.82056 0.80856 1.20609 1.21672 1.19694 1.21932 0.94708 0.91977 0.98010 1.22134 0.96390 0.89553 0.98705 1.62168 1.04750 1.40503 1.19018 1.22833 1.00292 0.98017 0.90206 1.22671 0.81097 0.96704 1.00824 1.87958 1.18626 1.94280 1.29889 1.22659 0.96757 0.96509 0.85272 1.22754 0.88860 0.98010 1.01401 1.83336 1.62590 1.09157 1.13097 0.92690 0.92867 0.92538 0.90207 0.91454 0.82443 0.90661 0.92850 0.95467 0.99468 0.93239 0.91775 0.94675 0.89932 0.93604 0.93878 0.89347 0.92382 0.88654 0.92338 0.88610 0.89559 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.04 -0.57 6.47 -27.88 -0.18 -0.75 16 3 C -0.23 -4.37 5.85 -35.92 -0.21 -4.58 16 4 C 0.07 1.59 10.75 -19.19 -0.21 1.39 16 5 N -0.41 -9.28 7.92 -11.86 -0.09 -9.38 16 6 C 0.08 1.59 4.47 -13.46 -0.06 1.53 16 7 C 0.15 2.68 5.54 -4.97 -0.03 2.66 16 8 N -0.53 -10.36 4.56 -237.50 -1.08 -11.45 16 9 C 0.16 3.77 3.66 -4.97 -0.02 3.75 16 10 C -0.48 -13.09 6.84 -34.44 -0.24 -13.33 16 11 H 0.09 2.50 4.76 -52.49 -0.25 2.25 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 14 Si 0.86 21.76 27.47 -169.99 -4.67 17.09 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 18 C 0.06 1.00 4.89 -3.82 -0.02 0.98 16 19 C 0.06 0.93 4.91 -3.82 -0.02 0.91 16 20 N -0.54 -7.17 4.73 -234.31 -1.11 -8.27 16 21 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 22 C 0.06 0.65 7.01 37.21 0.26 0.91 16 23 O -0.39 -4.66 10.83 -35.23 -0.38 -5.04 16 24 C 0.07 0.68 7.01 37.21 0.26 0.94 16 25 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 26 S 0.06 1.16 22.97 -107.50 -2.47 -1.30 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 3.31 8.06 -52.49 -0.42 2.89 16 33 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 34 H 0.05 0.99 8.01 -51.93 -0.42 0.58 16 35 H 0.03 0.66 5.04 -51.93 -0.26 0.39 16 36 H -0.01 -0.30 7.41 -51.92 -0.38 -0.69 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 0.88 6.30 -51.93 -0.33 0.56 16 39 H 0.04 0.58 8.12 -51.93 -0.42 0.15 16 40 H 0.08 1.45 6.20 -51.93 -0.32 1.12 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.93 6.38 -51.93 -0.33 0.60 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -31.31 389.35 -11.60 -42.91 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.21 Total: -0.17 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.23 Total: -4.57 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -1.51 Total: -54.77 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.38 Total: -5.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.47 Total: -1.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.31 -11.60 -42.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346163565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.725 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds