Wall clock time and date at job start Tue Mar 31 2020 22:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33641 * 126.03942 * 90.02170 * 3 2 1 5 5 N 1.31777 * 114.49765 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12847 * 359.97438 * 5 4 3 7 7 C 1.50704 * 124.91576 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47004 * 89.98015 * 7 6 5 9 9 C 1.46903 * 110.99820 * 293.95114 * 8 7 6 10 10 C 1.50702 * 109.46987 * 69.99857 * 9 8 7 11 11 H 1.08002 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99821 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00006 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99779 * 0.02562 * 12 10 9 15 15 H 1.48489 * 109.47118 * 89.99820 * 14 12 10 16 16 H 1.48501 * 109.46699 * 209.99903 * 14 12 10 17 17 H 1.48498 * 109.46964 * 329.99361 * 14 12 10 18 18 C 1.46902 * 110.99800 * 169.99690 * 8 7 6 19 19 C 1.53002 * 109.46940 * 189.99380 * 18 8 7 20 20 N 1.46902 * 109.46940 * 179.97438 * 19 18 8 21 21 C 1.47017 * 111.00018 * 293.63745 * 20 19 18 22 22 C 1.53098 * 109.25592 * 177.60751 * 21 20 19 23 23 O 1.43013 * 109.25791 * 56.84800 * 22 21 20 24 24 C 1.43020 * 113.74020 * 301.33324 * 23 22 21 25 25 C 1.47011 * 110.99500 * 170.00279 * 20 19 18 26 26 S 1.70982 * 110.16535 * 359.72804 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 122.74954 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46890 * 209.97400 * 7 6 5 34 34 H 1.08998 * 109.47211 * 329.97713 * 7 6 5 35 35 H 1.08998 * 109.46665 * 190.00453 * 9 8 7 36 36 H 1.09007 * 109.46974 * 310.00334 * 9 8 7 37 37 H 0.96999 * 119.99782 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47251 * 309.99622 * 18 8 7 39 39 H 1.09005 * 109.46673 * 69.99809 * 18 8 7 40 40 H 1.08997 * 109.47239 * 300.00729 * 19 18 8 41 41 H 1.09006 * 109.46425 * 60.00329 * 19 18 8 42 42 H 1.09000 * 109.50374 * 297.54367 * 21 20 19 43 43 H 1.09000 * 109.50661 * 57.67425 * 21 20 19 44 44 H 1.09000 * 109.50597 * 296.92011 * 22 21 20 45 45 H 1.08999 * 109.53993 * 176.80639 * 22 21 20 46 46 H 1.09003 * 109.50444 * 298.73027 * 24 23 22 47 47 H 1.09003 * 109.53939 * 178.62742 * 24 23 22 48 48 H 1.08996 * 109.51184 * 302.32505 * 25 20 19 49 49 H 1.08997 * 109.50600 * 62.42038 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8398 3.7065 -0.4258 7 6 3.3137 5.0473 -0.9246 8 7 4.7736 5.0214 -1.0867 9 6 5.4448 4.8744 0.2117 10 6 5.2042 3.4865 0.7473 11 1 4.6123 2.7837 0.1797 12 6 5.7407 3.1135 1.9614 13 7 5.5312 1.9021 2.4286 14 14 6.7652 4.3288 2.9427 15 1 5.8808 5.1011 3.8518 16 1 7.7755 3.5915 3.7433 17 1 7.4538 5.2598 2.0130 18 6 5.2463 6.2207 -1.7910 19 6 6.7207 6.0469 -2.1611 20 7 7.1934 7.2459 -2.8659 21 6 6.5270 7.3882 -4.1687 22 6 7.0033 8.6785 -4.8412 23 8 8.4280 8.6492 -4.9621 24 6 9.1092 8.5120 -3.7120 25 6 8.6543 7.2201 -3.0281 26 16 2.3849 2.3956 -1.4248 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1653 1.7934 2.0874 33 1 2.8454 5.2640 -1.8847 34 1 3.0416 5.8195 -0.2051 35 1 6.5156 5.0355 0.0873 36 1 5.0459 5.6083 0.9121 37 1 5.9084 1.6399 3.2829 38 1 4.6588 6.3650 -2.6977 39 1 5.1344 7.0903 -1.1433 40 1 7.3083 5.9025 -1.2544 41 1 6.8326 5.1773 -2.8088 42 1 6.7761 6.5353 -4.8000 43 1 5.4477 7.4309 -4.0227 44 1 6.7070 9.5352 -4.2359 45 1 6.5556 8.7601 -5.8316 46 1 8.8741 9.3639 -3.0740 47 1 10.1847 8.4729 -3.8853 48 1 9.1278 7.1401 -2.0496 49 1 8.9374 6.3641 -3.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346163565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:44 Heat of formation + Delta-G solvation = 11.620011 kcal Electronic energy + Delta-G solvation = -28027.886652 eV Core-core repulsion = 24310.066713 eV Total energy + Delta-G solvation = -3717.819939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74062 -40.45879 -38.61964 -36.62583 -35.01416 -34.43051 -32.21631 -31.64578 -30.47361 -29.33961 -27.70219 -26.05537 -25.05043 -24.61834 -23.66023 -23.09959 -21.61367 -21.22755 -19.97583 -19.12979 -18.58239 -17.62105 -17.12460 -16.72143 -16.37657 -16.26450 -16.12528 -15.95725 -15.68149 -15.33521 -15.09235 -14.97734 -14.88914 -14.63712 -14.36831 -14.30671 -13.85586 -13.58507 -13.26966 -13.15179 -13.10992 -12.88099 -12.65919 -12.49130 -12.43695 -12.35226 -12.25533 -12.15432 -11.75096 -11.62997 -11.60493 -11.39272 -11.11758 -10.65920 -10.58915 -10.09111 -9.69782 -9.43900 -9.29130 -9.12328 -8.06278 -5.96690 0.11342 0.78056 1.12229 1.31176 1.34178 1.39430 2.28251 2.42883 2.66329 2.96770 3.27669 3.39945 3.65029 3.82301 3.95233 4.02745 4.05155 4.18092 4.20734 4.23252 4.23588 4.34590 4.38951 4.47952 4.53556 4.59184 4.64270 4.67434 4.73839 4.79195 4.82234 4.83353 4.90648 4.94471 4.94653 4.98816 5.03931 5.06913 5.12054 5.27089 5.37034 5.57928 5.67972 5.85143 5.95648 6.06852 6.18331 6.27635 6.68867 6.96977 7.33966 7.55566 9.07131 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003402 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.009625 B = 8229.107229 C =10025.544070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 C -0.228 4.228 4 C 0.041 3.959 5 N -0.446 5.446 6 C 0.055 3.945 7 C 0.144 3.856 8 N -0.534 5.534 9 C 0.171 3.829 10 C -0.472 4.472 11 H 0.068 0.932 12 C 0.024 3.976 13 N -0.933 5.933 14 Si 0.914 3.086 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.258 1.258 18 C 0.068 3.932 19 C 0.069 3.931 20 N -0.542 5.542 21 C 0.014 3.986 22 C 0.064 3.936 23 O -0.404 6.404 24 C 0.068 3.932 25 C 0.016 3.984 26 S 0.115 5.885 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.025 0.975 36 H -0.025 1.025 37 H 0.254 0.746 38 H 0.094 0.906 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 7.873 -13.805 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.349 4.349 4 C -0.110 4.110 5 N -0.159 5.159 6 C -0.224 4.224 7 C 0.013 3.987 8 N -0.259 5.259 9 C 0.044 3.956 10 C -0.511 4.511 11 H 0.086 0.914 12 C -0.173 4.173 13 N -0.575 5.575 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.182 1.182 18 C -0.060 4.060 19 C -0.059 4.059 20 N -0.268 5.268 21 C -0.114 4.114 22 C -0.012 4.012 23 O -0.323 6.323 24 C -0.009 4.009 25 C -0.113 4.113 26 S 0.369 5.631 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.043 0.957 36 H -0.008 1.008 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.103 0.897 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.608 8.070 -14.521 17.000 hybrid contribution 0.778 -0.317 2.679 2.808 sum -2.829 7.752 -11.842 14.434 Atomic orbital electron populations 1.21721 0.92686 1.02887 1.02048 1.20002 0.97203 0.87719 1.03168 1.26109 1.11034 1.03054 0.94709 1.21305 1.00607 0.89655 0.99460 1.66191 1.11128 1.18918 1.19638 1.26499 1.03983 1.01149 0.90733 1.20488 0.88392 0.89216 1.00572 1.61871 1.03903 1.38300 1.21859 1.20037 0.93968 0.95677 0.85907 1.21418 1.29449 0.97106 1.03174 0.91362 1.25316 0.97656 0.95905 0.98392 1.69994 1.47690 1.19709 1.20123 0.86236 0.79443 0.80462 0.79724 1.21159 1.21801 1.18193 1.21983 0.95235 0.90214 0.98593 1.21921 0.95907 0.90293 0.97762 1.62185 1.05607 1.38850 1.20159 1.22929 1.00839 0.98539 0.89090 1.22808 0.80385 0.95979 1.02077 1.87943 1.19590 1.94229 1.30565 1.22729 0.97759 0.95550 0.84827 1.22825 0.88186 0.98782 1.01475 1.83003 1.61228 1.07407 1.11440 0.90092 0.92342 0.93060 0.90688 0.90273 0.83806 0.86750 0.93330 0.95705 1.00760 0.93734 0.88738 0.94728 0.92346 0.94712 0.94561 0.88167 0.91877 0.86428 0.91917 0.86723 0.89672 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.89 71.98 0.71 -2.32 16 2 C -0.04 -1.18 6.47 29.85 0.19 -0.99 16 3 C -0.23 -8.47 5.85 24.64 0.14 -8.33 16 4 C 0.04 1.80 10.75 83.66 0.90 2.70 16 5 N -0.45 -20.88 7.92 -191.45 -1.52 -22.40 16 6 C 0.05 2.22 4.47 88.52 0.40 2.62 16 7 C 0.14 5.08 5.54 85.56 0.47 5.55 16 8 N -0.53 -20.37 4.56 -905.32 -4.13 -24.50 16 9 C 0.17 8.04 3.66 85.56 0.31 8.35 16 10 C -0.47 -25.96 6.84 25.60 0.18 -25.78 16 11 H 0.07 3.98 4.76 -2.91 -0.01 3.97 16 12 C 0.02 1.39 5.47 84.66 0.46 1.85 16 13 N -0.93 -56.83 13.96 21.45 0.30 -56.53 16 14 Si 0.91 45.65 27.47 68.60 1.88 47.53 16 15 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 16 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 17 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 18 C 0.07 2.02 4.89 86.30 0.42 2.44 16 19 C 0.07 2.08 4.91 86.30 0.42 2.50 16 20 N -0.54 -13.49 4.73 -895.21 -4.23 -17.72 16 21 C 0.01 0.28 5.44 86.31 0.47 0.75 16 22 C 0.06 1.13 7.01 72.01 0.50 1.63 16 23 O -0.40 -8.72 10.83 -148.98 -1.61 -10.33 16 24 C 0.07 1.29 7.01 72.01 0.50 1.80 16 25 C 0.02 0.35 5.64 86.31 0.49 0.84 16 26 S 0.12 4.01 22.97 -56.49 -1.30 2.71 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.14 6.49 8.06 -2.91 -0.02 6.47 16 33 H 0.11 3.07 7.93 -2.39 -0.02 3.05 16 34 H 0.05 1.76 8.01 -2.39 -0.02 1.74 16 35 H 0.03 1.19 5.04 -2.39 -0.01 1.18 16 36 H -0.03 -1.25 7.41 -2.38 -0.02 -1.26 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.09 2.27 6.30 -2.39 -0.02 2.25 16 39 H 0.03 1.06 8.12 -2.38 -0.02 1.04 16 40 H 0.06 2.03 6.20 -2.39 -0.01 2.01 16 41 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 42 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 1.77 6.38 -2.39 -0.02 1.76 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 49 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.93 389.35 -3.15 -72.08 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.87 Total: 15.53 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 6.58 Total: -6.38 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -9.58 Total: -121.14 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.61 Total: -10.33 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.30 Total: 2.71 kcal Total: -68.93 -3.15 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346163565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.702 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds