Wall clock time and date at job start Tue Mar 31 2020 22:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 C 1.52999 * 109.46985 * 240.00418 * 2 1 3 5 5 O 1.45195 * 109.47509 * 120.00149 * 2 1 3 6 6 C 1.34236 * 116.99666 * 60.00311 * 5 2 1 7 7 O 1.20820 * 120.00010 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99651 * 180.02562 * 6 5 2 9 9 H 1.09005 * 115.56669 * 92.62095 * 8 6 5 10 10 C 1.53007 * 117.49903 * 306.93027 * 8 6 5 11 11 H 1.09000 * 117.51919 * 145.03350 * 10 8 6 12 12 C 1.50696 * 117.49823 * 359.97438 * 10 8 6 13 13 O 1.21281 * 120.00579 * 299.48491 * 12 10 8 14 14 N 1.34782 * 119.99755 * 119.47818 * 12 10 8 15 15 C 1.47581 * 134.49340 * 179.97438 * 14 12 10 16 16 C 1.53944 * 86.11518 * 155.36191 * 15 14 12 17 17 O 1.42897 * 113.74748 * 269.15574 * 16 15 14 18 18 C 1.50702 * 113.73913 * 137.95386 * 16 15 14 19 19 H 1.08005 * 120.00069 * 252.39219 * 18 16 15 20 20 C 1.37882 * 119.99919 * 72.38826 * 18 16 15 21 21 N 1.31507 * 119.99917 * 353.21763 * 20 18 16 22 22 Si 1.86799 * 119.99842 * 173.21032 * 20 18 16 23 23 H 1.48503 * 109.46996 * 90.00354 * 22 20 18 24 24 H 1.48500 * 109.47371 * 330.00657 * 22 20 18 25 25 H 1.48500 * 109.47355 * 210.00094 * 22 20 18 26 26 C 1.47808 * 134.45597 * 359.87621 * 14 12 10 27 27 C 1.52999 * 59.99922 * 252.51189 * 10 8 6 28 28 C 1.53005 * 117.49936 * 107.49128 * 27 10 8 29 29 C 1.53002 * 117.50195 * 252.48572 * 27 10 8 30 30 H 1.08997 * 109.47159 * 299.99499 * 1 2 3 31 31 H 1.08991 * 109.47663 * 59.99552 * 1 2 3 32 32 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47199 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47310 * 300.00165 * 3 2 1 35 35 H 1.08997 * 109.46771 * 60.00263 * 3 2 1 36 36 H 1.09000 * 109.47435 * 300.00052 * 4 2 1 37 37 H 1.09002 * 109.47303 * 59.99829 * 4 2 1 38 38 H 1.08997 * 109.47181 * 179.97438 * 4 2 1 39 39 H 1.09002 * 113.76338 * 41.06457 * 15 14 12 40 40 H 1.09000 * 113.87436 * 269.68109 * 15 14 12 41 41 H 0.96693 * 114.00058 * 172.38569 * 17 16 15 42 42 H 0.97000 * 119.99948 * 4.61006 * 21 20 18 43 43 H 1.09004 * 113.77374 * 90.37344 * 26 14 12 44 44 H 1.09001 * 113.83739 * 318.91300 * 26 14 12 45 45 H 1.08996 * 109.47338 * 67.84285 * 28 27 10 46 46 H 1.09003 * 109.47101 * 187.84366 * 28 27 10 47 47 H 1.09001 * 109.46640 * 307.83406 * 28 27 10 48 48 H 1.09003 * 109.46684 * 60.00020 * 29 27 10 49 49 H 1.08994 * 109.47414 * 179.97438 * 29 27 10 50 50 H 1.08999 * 109.47000 * 300.00257 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3377 7 8 0.9560 -2.5025 0.5081 8 6 2.1175 -2.7435 2.5439 9 1 1.4382 -2.7382 3.3964 10 6 3.6191 -2.7613 2.8373 11 1 3.9279 -2.7680 3.8827 12 6 4.5207 -2.0031 1.8977 13 8 4.5647 -2.3047 0.7238 14 7 5.2783 -0.9895 2.3618 15 6 6.2457 -0.0574 1.7508 16 6 5.9036 0.8936 2.9120 17 8 4.8284 1.7897 2.6242 18 6 7.1044 1.5873 3.5019 19 1 7.4695 1.2994 4.4768 20 6 7.7371 2.5893 2.7971 21 7 7.3787 2.8494 1.5589 22 14 9.1033 3.5774 3.6012 23 1 10.4082 2.9155 3.3473 24 1 8.8636 3.6538 5.0647 25 1 9.1244 4.9483 3.0307 26 6 5.4719 -0.3646 3.6872 27 6 2.9304 -4.0158 2.2963 28 6 3.2098 -4.4040 0.8429 29 6 2.7278 -5.1837 3.2638 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 5.9396 0.3149 0.7732 40 1 7.2746 -0.4170 1.7658 41 1 4.5333 2.3074 3.3856 42 1 6.6255 2.3829 1.1638 43 1 6.2726 -0.8160 4.2731 44 1 4.5491 -0.2370 4.2531 45 1 4.2491 -4.7172 0.7438 46 1 2.5537 -5.2250 0.5535 47 1 3.0254 -3.5464 0.1960 48 1 2.1139 -4.8575 4.1034 49 1 2.2286 -6.0024 2.7457 50 1 3.6962 -5.5227 3.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413727957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:28 Heat of formation + Delta-G solvation = -112.251566 kcal Electronic energy + Delta-G solvation = -32814.065532 eV Core-core repulsion = 28615.828497 eV Total energy + Delta-G solvation = -4198.237035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12079 -39.71604 -38.58605 -36.88988 -36.12889 -34.07854 -33.81225 -32.42142 -30.04598 -28.44259 -27.50203 -27.24442 -27.11650 -26.02395 -25.00441 -24.46255 -22.24377 -20.47382 -19.57942 -18.94642 -18.25071 -17.73838 -16.92606 -16.52329 -16.10745 -15.97879 -15.29861 -14.79113 -14.69615 -14.52327 -14.18218 -13.88005 -13.83161 -13.53102 -13.47854 -13.23530 -12.99075 -12.73169 -12.52201 -12.29407 -12.16699 -12.15543 -12.01139 -11.80127 -11.72986 -11.65266 -11.55094 -11.43516 -11.25389 -11.20825 -10.94181 -10.87536 -10.33110 -10.26808 -10.20259 -10.12990 -10.02880 -9.70437 -9.27857 -9.24224 -8.60808 -8.35309 -7.84733 -6.50745 -4.37394 2.33697 2.67836 2.83441 3.33767 3.35129 3.39098 3.53189 3.77898 4.38187 4.40531 4.53549 4.59684 4.85348 4.93565 4.95313 4.98126 5.08603 5.13044 5.14712 5.28595 5.43381 5.50339 5.56582 5.61471 5.65973 5.69980 5.80592 5.84848 5.91098 5.98518 6.00223 6.02893 6.03958 6.07964 6.13348 6.16469 6.24178 6.30422 6.44111 6.50424 6.56345 6.60638 6.62871 6.81379 6.97431 7.71428 8.03276 8.16734 8.39498 8.66510 8.70644 8.92298 9.46637 10.87478 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004233 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.872769 B = 6613.331600 C = 7939.804854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.330 6.330 6 C 0.503 3.497 7 O -0.502 6.502 8 C -0.137 4.137 9 H 0.145 0.855 10 C -0.159 4.159 11 H 0.126 0.874 12 C 0.560 3.440 13 O -0.549 6.549 14 N -0.622 5.622 15 C 0.129 3.871 16 C 0.222 3.778 17 O -0.554 6.554 18 C -0.640 4.640 19 H 0.059 0.941 20 C 0.040 3.960 21 N -0.885 5.885 22 Si 1.069 2.931 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.283 1.283 26 C 0.073 3.927 27 C -0.060 4.060 28 C -0.113 4.113 29 C -0.116 4.116 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.364 0.636 42 H 0.284 0.716 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -9.163 3.439 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.246 6.246 6 C 0.346 3.654 7 O -0.391 6.391 8 C -0.156 4.156 9 H 0.163 0.837 10 C -0.180 4.180 11 H 0.144 0.856 12 C 0.349 3.651 13 O -0.429 6.429 14 N -0.355 5.355 15 C 0.007 3.993 16 C 0.181 3.819 17 O -0.359 6.359 18 C -0.678 4.678 19 H 0.077 0.923 20 C -0.170 4.170 21 N -0.518 5.518 22 Si 0.897 3.103 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.209 1.209 26 C -0.050 4.050 27 C -0.061 4.061 28 C -0.170 4.170 29 C -0.173 4.173 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.210 0.790 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.026 -8.660 1.556 13.339 hybrid contribution -1.203 -0.924 1.085 1.865 sum -11.229 -9.584 2.641 14.997 Atomic orbital electron populations 1.22491 0.94679 1.04182 1.02448 1.22146 0.93481 0.92669 0.83055 1.21790 1.03485 0.91894 1.02224 1.22429 1.02657 1.02312 0.96139 1.86654 1.68947 1.24345 1.44686 1.22157 0.76607 0.80870 0.85719 1.90534 1.35840 1.70194 1.42488 1.22164 0.94386 1.01249 0.97820 0.83729 1.22543 0.92464 1.01681 1.01301 0.85598 1.18887 0.80251 0.78446 0.87485 1.90644 1.68199 1.66773 1.17282 1.50083 1.41190 1.31190 1.13051 1.23474 0.91279 0.85404 0.99103 1.20138 0.86303 0.85290 0.90178 1.86367 1.53597 1.56782 1.39145 1.22162 1.14926 1.23670 1.06998 0.92284 1.25803 1.00746 0.95626 0.94830 1.70648 1.26455 1.42721 1.11982 0.83552 0.75214 0.76581 0.74955 1.21343 1.21327 1.20908 1.24157 0.99587 0.94739 0.86558 1.21676 0.97729 0.88128 0.98583 1.21506 1.01213 1.02401 0.91833 1.21414 1.02296 0.96003 0.97538 0.92255 0.91249 0.90150 0.90545 0.90996 0.91665 0.90280 0.91703 0.91318 0.91480 0.89564 0.79006 0.90369 0.89966 0.91597 0.91765 0.92918 0.89978 0.91978 0.91242 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 2 C 0.12 1.95 1.13 -90.62 -0.10 1.85 16 3 C -0.14 -2.12 8.85 37.16 0.33 -1.79 16 4 C -0.18 -2.90 8.37 37.16 0.31 -2.59 16 5 O -0.33 -5.92 8.96 -39.27 -0.35 -6.27 16 6 C 0.50 8.45 4.55 36.00 0.16 8.62 16 7 O -0.50 -8.81 11.48 -18.74 -0.22 -9.03 16 8 C -0.14 -1.92 5.88 -91.77 -0.54 -2.46 16 9 H 0.15 1.57 8.05 -51.93 -0.42 1.15 16 10 C -0.16 -2.37 5.68 -91.77 -0.52 -2.89 16 11 H 0.13 1.59 8.07 -51.93 -0.42 1.17 16 12 C 0.56 10.81 6.33 -10.98 -0.07 10.74 16 13 O -0.55 -11.88 13.44 5.56 0.07 -11.80 16 14 N -0.62 -12.52 3.61 -178.11 -0.64 -13.17 16 15 C 0.13 2.94 7.34 -2.97 -0.02 2.91 16 16 C 0.22 4.95 0.93 -90.84 -0.08 4.86 16 17 O -0.55 -12.45 12.59 -35.23 -0.44 -12.89 16 18 C -0.64 -15.73 8.55 -34.44 -0.29 -16.03 16 19 H 0.06 1.43 7.82 -52.48 -0.41 1.02 16 20 C 0.04 1.03 5.40 -17.82 -0.10 0.94 16 21 N -0.88 -24.70 13.53 55.43 0.75 -23.95 16 22 Si 1.07 22.96 29.91 -169.99 -5.08 17.88 16 23 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.07 1.36 7.96 -2.83 -0.02 1.34 16 27 C -0.06 -0.80 2.70 -154.50 -0.42 -1.22 16 28 C -0.11 -1.72 7.61 37.16 0.28 -1.43 16 29 C -0.12 -1.09 9.85 37.16 0.37 -0.72 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.18 5.89 -51.93 -0.31 0.87 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.37 5.89 -51.93 -0.31 1.06 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.66 7.82 -51.93 -0.41 1.25 16 40 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 41 H 0.36 7.11 9.10 45.56 0.41 7.52 16 42 H 0.28 8.06 5.83 -40.82 -0.24 7.82 16 43 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 46 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 47 H 0.08 1.51 4.45 -51.93 -0.23 1.28 16 48 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 49 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -30.55 398.59 -7.73 -38.28 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -7.42 Total: 14.96 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.41 Total: -0.01 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.11 Total: -37.12 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.94 Total: -39.99 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.08 Total: 17.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.55 -7.73 -38.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413727957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.971 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds