Wall clock time and date at job start Tue Mar 31 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35993 * 117.00348 * 2 1 4 4 C 1.38670 * 120.04437 * 0.27279 * 3 2 1 5 5 C 1.38234 * 120.08987 * 180.27451 * 4 3 2 6 6 C 1.50696 * 119.91041 * 179.70720 * 5 4 3 7 7 C 1.38227 * 120.18009 * 359.72561 * 5 4 3 8 8 C 1.38671 * 120.08706 * 0.02562 * 7 5 4 9 9 O 1.35994 * 120.04483 * 179.97438 * 8 7 5 10 10 C 1.42902 * 116.99997 * 0.02562 * 9 8 7 11 11 C 1.38977 * 119.90937 * 359.97438 * 8 7 5 12 12 O 1.36093 * 120.08615 * 180.02562 * 11 8 7 13 13 C 1.42906 * 117.00090 * 90.00921 * 12 11 8 14 14 C 1.52998 * 109.47322 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47135 * 54.99494 * 14 13 12 16 16 O 1.42897 * 109.46674 * 294.99501 * 14 13 12 17 17 C 1.53004 * 109.46799 * 174.99810 * 14 13 12 18 18 N 1.46898 * 109.46619 * 184.99872 * 17 14 13 19 19 C 1.46901 * 111.00443 * 66.04574 * 18 17 14 20 20 C 1.46906 * 110.99820 * 189.99887 * 18 17 14 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 17 22 22 H 1.08007 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00506 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99253 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00341 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47279 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47075 * 119.99817 * 25 23 21 28 28 H 1.48496 * 109.46942 * 240.00005 * 25 23 21 29 29 H 1.08999 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47290 * 300.00278 * 1 2 3 31 31 H 1.09007 * 109.46972 * 60.00218 * 1 2 3 32 32 H 1.07998 * 119.95622 * 0.02895 * 4 3 2 33 33 H 1.09001 * 109.47035 * 270.01891 * 6 5 4 34 34 H 1.09001 * 109.47164 * 30.01797 * 6 5 4 35 35 H 1.08998 * 109.47630 * 150.02108 * 6 5 4 36 36 H 1.08001 * 119.95740 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47170 * 300.00643 * 10 9 8 38 38 H 1.09001 * 109.47376 * 60.00170 * 10 9 8 39 39 H 1.09001 * 109.47564 * 180.02562 * 10 9 8 40 40 H 1.08994 * 109.46880 * 59.99145 * 13 12 11 41 41 H 1.09004 * 109.46141 * 299.99938 * 13 12 11 42 42 H 0.96701 * 114.00549 * 300.00026 * 16 14 13 43 43 H 1.08994 * 109.47270 * 64.99737 * 17 14 13 44 44 H 1.08999 * 109.47017 * 304.99614 * 17 14 13 45 45 H 1.09002 * 109.47401 * 183.95136 * 19 18 17 46 46 H 1.09001 * 109.46874 * 63.95149 * 19 18 17 47 47 H 1.09004 * 109.46970 * 303.95282 * 19 18 17 48 48 H 1.08997 * 109.46995 * 289.99871 * 20 18 17 49 49 H 1.09001 * 109.46848 * 49.99877 * 20 18 17 50 50 H 0.96999 * 119.99606 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0057 5 6 1.9188 3.6074 0.0000 6 6 1.0951 4.8694 -0.0004 7 6 3.2988 3.6851 -0.0057 8 6 4.0604 2.5262 -0.0063 9 8 5.4181 2.6037 -0.0124 10 6 5.9933 3.9118 -0.0175 11 6 3.4342 1.2855 -0.0005 12 8 4.1781 0.1459 -0.0005 13 6 4.5376 -0.3942 1.2728 14 6 5.3665 -1.6645 1.0723 15 1 6.2235 -1.4426 0.4367 16 8 4.5593 -2.6667 0.4510 17 6 5.8562 -2.1733 2.4297 18 7 6.7494 -3.3220 2.2286 19 6 7.9829 -2.9161 1.5417 20 6 7.0511 -3.9840 3.5049 21 6 7.7594 -5.2874 3.2397 22 1 7.9653 -5.5933 2.2245 23 6 8.1446 -6.0896 4.2929 24 7 7.8943 -5.7168 5.5290 25 14 9.0232 -7.7049 3.9641 26 1 9.1841 -7.8918 2.4997 27 1 10.3599 -7.6817 4.6104 28 1 8.2235 -8.8255 4.5207 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2136 2.3188 0.0106 33 1 0.8924 5.1706 -1.0282 34 1 0.1533 4.6887 0.5177 35 1 1.6437 5.6616 0.5088 36 1 3.7847 4.6497 -0.0106 37 1 5.6651 4.4496 -0.9071 38 1 5.6731 4.4530 0.8728 39 1 7.0803 3.8309 -0.0226 40 1 3.6345 -0.6338 1.8339 41 1 5.1250 0.3391 1.8255 42 1 3.7767 -2.9143 0.9622 43 1 5.0015 -2.4788 3.0331 44 1 6.3971 -1.3778 2.9422 45 1 8.5946 -3.7961 1.3430 46 1 8.5385 -2.2223 2.1726 47 1 7.7307 -2.4287 0.5999 48 1 7.6910 -3.3386 4.1066 49 1 6.1226 -4.1778 4.0420 50 1 8.1649 -6.2813 6.2700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414167629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:28 Heat of formation + Delta-G solvation = -127.443752 kcal Electronic energy + Delta-G solvation = -30004.916850 eV Core-core repulsion = 25806.021032 eV Total energy + Delta-G solvation = -4198.895818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01354 -39.22848 -38.47742 -37.17340 -36.93580 -35.24641 -32.48180 -32.08896 -30.08520 -29.91592 -28.11204 -28.05191 -27.19582 -26.49304 -25.56945 -23.80062 -22.25515 -21.85717 -21.30858 -20.15405 -18.62164 -17.46571 -17.42868 -16.78432 -16.62229 -16.29821 -15.88600 -15.76561 -15.69640 -15.04205 -14.85842 -14.65916 -14.38687 -14.19422 -13.99937 -13.75512 -13.61632 -13.27352 -13.15358 -12.92105 -12.60792 -12.36080 -12.26866 -12.07187 -11.86338 -11.81767 -11.77633 -11.37569 -11.27088 -11.00993 -10.84378 -10.72928 -10.67594 -10.61117 -10.18734 -9.92178 -9.82608 -9.54328 -9.07413 -8.45907 -8.39507 -8.32835 -7.13930 -5.98479 -3.98907 0.89577 1.09458 2.59668 3.14339 3.34973 3.39663 3.42030 3.48368 3.71827 4.34003 4.47157 4.57150 4.69476 4.72557 4.80659 4.83462 4.86491 4.88326 4.89260 4.99365 5.16426 5.18121 5.20457 5.23835 5.25994 5.26511 5.36773 5.43498 5.44644 5.60520 5.64723 5.75897 5.76486 5.91870 6.10619 6.12270 6.17021 6.25956 6.39599 6.49334 6.84498 6.89377 7.03595 7.31755 7.37585 7.65908 7.85951 8.10033 8.19440 8.26778 8.60523 9.09598 9.65096 11.12641 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002234 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.502363 B =12532.760566 C =13447.097628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.153 3.847 4 C -0.237 4.237 5 C -0.016 4.016 6 C -0.115 4.115 7 C -0.237 4.237 8 C 0.151 3.849 9 O -0.300 6.300 10 C 0.026 3.974 11 C 0.027 3.973 12 O -0.298 6.298 13 C 0.037 3.963 14 C 0.119 3.881 15 H 0.104 0.896 16 O -0.537 6.537 17 C 0.029 3.971 18 N -0.529 5.529 19 C 0.036 3.964 20 C 0.193 3.807 21 C -0.503 4.503 22 H 0.065 0.935 23 C 0.052 3.948 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.271 1.271 27 H -0.286 1.286 28 H -0.284 1.284 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.368 0.632 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.010 0.990 47 H 0.048 0.952 48 H -0.010 1.010 49 H 0.029 0.971 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.258 24.703 -10.803 30.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.106 3.894 4 C -0.256 4.256 5 C -0.017 4.017 6 C -0.171 4.171 7 C -0.256 4.256 8 C 0.105 3.895 9 O -0.212 6.212 10 C -0.069 4.069 11 C -0.019 4.019 12 O -0.215 6.215 13 C -0.039 4.039 14 C 0.059 3.941 15 H 0.122 0.878 16 O -0.341 6.341 17 C -0.101 4.101 18 N -0.253 5.253 19 C -0.113 4.113 20 C 0.068 3.932 21 C -0.541 4.541 22 H 0.083 0.917 23 C -0.148 4.148 24 N -0.541 5.541 25 Si 0.727 3.273 26 H -0.196 1.196 27 H -0.212 1.212 28 H -0.210 1.210 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.214 0.786 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.028 0.972 47 H 0.067 0.933 48 H 0.007 0.993 49 H 0.047 0.953 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.706 23.874 -11.524 30.316 hybrid contribution 0.150 0.315 1.278 1.325 sum -14.556 24.189 -10.246 30.033 Atomic orbital electron populations 1.23134 0.78257 1.04354 1.01221 1.86229 1.21252 1.25615 1.87779 1.19022 0.90745 0.85048 0.94539 1.20927 1.00038 0.91127 1.13514 1.19447 0.92984 0.94720 0.94510 1.20818 0.99342 0.94311 1.02670 1.20915 0.93959 0.97178 1.13545 1.19031 0.83079 0.92680 0.94754 1.86210 1.16517 1.30576 1.87886 1.23131 0.99527 0.82998 1.01290 1.17054 0.86624 0.85194 1.12979 1.86263 1.69621 1.37085 1.28490 1.23588 0.98844 0.96584 0.84879 1.21904 0.92969 0.84223 0.95052 0.87813 1.86623 1.39989 1.58402 1.49054 1.22622 0.98406 0.93886 0.95148 1.62002 1.14335 1.23085 1.25905 1.22272 0.92130 1.00004 0.96891 1.19759 0.96013 0.93450 0.84024 1.21220 1.36086 1.03646 0.93168 0.91684 1.25004 0.96381 0.98419 0.95015 1.69975 1.47849 1.38061 0.98217 0.86425 0.79090 0.83393 0.78438 1.19588 1.21188 1.21046 0.87814 0.92626 0.92580 0.84903 0.90664 0.91223 0.91242 0.84926 0.92529 0.92573 0.87885 0.92869 0.92572 0.78591 0.90987 0.95218 0.90718 0.97165 0.93325 0.99252 0.95334 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.66 10.28 -34.30 -0.35 -4.01 16 3 C 0.15 1.92 6.70 -39.15 -0.26 1.66 16 4 C -0.24 -2.28 8.69 -39.42 -0.34 -2.62 16 5 C -0.02 -0.14 5.88 -104.63 -0.62 -0.76 16 6 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16 7 C -0.24 -2.28 8.69 -39.43 -0.34 -2.62 16 8 C 0.15 1.89 6.70 -39.15 -0.26 1.63 16 9 O -0.30 -3.71 10.28 -34.31 -0.35 -4.06 16 10 C 0.03 0.19 9.81 101.05 0.99 1.18 16 11 C 0.03 0.39 5.75 -39.03 -0.22 0.17 16 12 O -0.30 -4.93 9.59 -48.22 -0.46 -5.39 16 13 C 0.04 0.55 5.70 37.16 0.21 0.77 16 14 C 0.12 2.01 3.21 -26.73 -0.09 1.93 16 15 H 0.10 1.86 6.26 -51.93 -0.33 1.54 16 16 O -0.54 -9.75 13.25 -40.08 -0.53 -10.28 16 17 C 0.03 0.54 4.60 -3.82 -0.02 0.52 16 18 N -0.53 -12.07 4.70 -244.37 -1.15 -13.22 16 19 C 0.04 0.74 9.17 60.07 0.55 1.29 16 20 C 0.19 5.19 4.72 -4.97 -0.02 5.16 16 21 C -0.50 -14.57 8.52 -34.44 -0.29 -14.87 16 22 H 0.06 1.89 7.10 -52.48 -0.37 1.51 16 23 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 24 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 25 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 37 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 38 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.37 5.51 9.05 45.56 0.41 5.92 16 43 H 0.07 1.31 7.93 -51.93 -0.41 0.89 16 44 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 45 H 0.07 1.65 6.86 -51.93 -0.36 1.30 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.05 0.90 6.21 -51.93 -0.32 0.58 16 48 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 49 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 409.77 15.07 6.18 6.18 Total: -1.00 -35.71 409.77 -7.81 -43.52 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.39 Total: 0.85 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.54 Total: -4.21 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.41 Total: -39.75 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.70 Total: -23.76 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.71 -7.81 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.924 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds