Wall clock time and date at job start Tue Mar 31 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35993 * 117.00348 * 2 1 4 4 C 1.38670 * 120.04437 * 0.27279 * 3 2 1 5 5 C 1.38234 * 120.08987 * 180.27451 * 4 3 2 6 6 C 1.50696 * 119.91041 * 179.70720 * 5 4 3 7 7 C 1.38227 * 120.18009 * 359.72561 * 5 4 3 8 8 C 1.38671 * 120.08706 * 0.02562 * 7 5 4 9 9 O 1.35994 * 120.04483 * 179.97438 * 8 7 5 10 10 C 1.42902 * 116.99997 * 0.02562 * 9 8 7 11 11 C 1.38977 * 119.90937 * 359.97438 * 8 7 5 12 12 O 1.36093 * 120.08615 * 180.02562 * 11 8 7 13 13 C 1.42906 * 117.00090 * 90.00921 * 12 11 8 14 14 C 1.52998 * 109.47322 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47135 * 54.99494 * 14 13 12 16 16 O 1.42897 * 109.46674 * 294.99501 * 14 13 12 17 17 C 1.53004 * 109.46799 * 174.99810 * 14 13 12 18 18 N 1.46898 * 109.46619 * 184.99872 * 17 14 13 19 19 C 1.46901 * 111.00443 * 66.04574 * 18 17 14 20 20 C 1.46906 * 110.99820 * 189.99887 * 18 17 14 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 17 22 22 H 1.08007 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00506 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99253 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00341 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47279 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47075 * 119.99817 * 25 23 21 28 28 H 1.48496 * 109.46942 * 240.00005 * 25 23 21 29 29 H 1.08999 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47290 * 300.00278 * 1 2 3 31 31 H 1.09007 * 109.46972 * 60.00218 * 1 2 3 32 32 H 1.07998 * 119.95622 * 0.02895 * 4 3 2 33 33 H 1.09001 * 109.47035 * 270.01891 * 6 5 4 34 34 H 1.09001 * 109.47164 * 30.01797 * 6 5 4 35 35 H 1.08998 * 109.47630 * 150.02108 * 6 5 4 36 36 H 1.08001 * 119.95740 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47170 * 300.00643 * 10 9 8 38 38 H 1.09001 * 109.47376 * 60.00170 * 10 9 8 39 39 H 1.09001 * 109.47564 * 180.02562 * 10 9 8 40 40 H 1.08994 * 109.46880 * 59.99145 * 13 12 11 41 41 H 1.09004 * 109.46141 * 299.99938 * 13 12 11 42 42 H 0.96701 * 114.00549 * 300.00026 * 16 14 13 43 43 H 1.08994 * 109.47270 * 64.99737 * 17 14 13 44 44 H 1.08999 * 109.47017 * 304.99614 * 17 14 13 45 45 H 1.09002 * 109.47401 * 183.95136 * 19 18 17 46 46 H 1.09001 * 109.46874 * 63.95149 * 19 18 17 47 47 H 1.09004 * 109.46970 * 303.95282 * 19 18 17 48 48 H 1.08997 * 109.46995 * 289.99871 * 20 18 17 49 49 H 1.09001 * 109.46848 * 49.99877 * 20 18 17 50 50 H 0.96999 * 119.99606 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0057 5 6 1.9188 3.6074 0.0000 6 6 1.0951 4.8694 -0.0004 7 6 3.2988 3.6851 -0.0057 8 6 4.0604 2.5262 -0.0063 9 8 5.4181 2.6037 -0.0124 10 6 5.9933 3.9118 -0.0175 11 6 3.4342 1.2855 -0.0005 12 8 4.1781 0.1459 -0.0005 13 6 4.5376 -0.3942 1.2728 14 6 5.3665 -1.6645 1.0723 15 1 6.2235 -1.4426 0.4367 16 8 4.5593 -2.6667 0.4510 17 6 5.8562 -2.1733 2.4297 18 7 6.7494 -3.3220 2.2286 19 6 7.9829 -2.9161 1.5417 20 6 7.0511 -3.9840 3.5049 21 6 7.7594 -5.2874 3.2397 22 1 7.9653 -5.5933 2.2245 23 6 8.1446 -6.0896 4.2929 24 7 7.8943 -5.7168 5.5290 25 14 9.0232 -7.7049 3.9641 26 1 9.1841 -7.8918 2.4997 27 1 10.3599 -7.6817 4.6104 28 1 8.2235 -8.8255 4.5207 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2136 2.3188 0.0106 33 1 0.8924 5.1706 -1.0282 34 1 0.1533 4.6887 0.5177 35 1 1.6437 5.6616 0.5088 36 1 3.7847 4.6497 -0.0106 37 1 5.6651 4.4496 -0.9071 38 1 5.6731 4.4530 0.8728 39 1 7.0803 3.8309 -0.0226 40 1 3.6345 -0.6338 1.8339 41 1 5.1250 0.3391 1.8255 42 1 3.7767 -2.9143 0.9622 43 1 5.0015 -2.4788 3.0331 44 1 6.3971 -1.3778 2.9422 45 1 8.5946 -3.7961 1.3430 46 1 8.5385 -2.2223 2.1726 47 1 7.7307 -2.4287 0.5999 48 1 7.6910 -3.3386 4.1066 49 1 6.1226 -4.1778 4.0420 50 1 8.1649 -6.2813 6.2700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:28 Heat of formation + Delta-G solvation = -153.825402 kcal Electronic energy + Delta-G solvation = -30006.060844 eV Core-core repulsion = 25806.021032 eV Total energy + Delta-G solvation = -4200.039812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82927 -40.00476 -39.78605 -38.46911 -37.73977 -36.87679 -34.63565 -32.88937 -31.49569 -30.65960 -29.24395 -28.72529 -28.61680 -27.88161 -26.56476 -25.49625 -23.02974 -22.99295 -22.59737 -21.86236 -19.50299 -18.62171 -18.29294 -18.23860 -17.69836 -17.55367 -17.17159 -16.83765 -16.69658 -16.44831 -16.05960 -15.79512 -15.61535 -15.39937 -15.33781 -14.87043 -14.65703 -14.37930 -14.18056 -13.99625 -13.77853 -13.47934 -13.31613 -13.23001 -12.98415 -12.81531 -12.63450 -12.61024 -12.57894 -12.44891 -12.43130 -12.40798 -12.06591 -11.99040 -11.66734 -11.40131 -11.34792 -10.95739 -10.81957 -10.62696 -9.21358 -9.18832 -9.00422 -8.21290 -6.30880 0.09064 0.31607 1.40656 1.41483 1.55765 1.88627 2.25566 2.41078 2.70594 2.73464 3.10995 3.31381 3.57509 3.73219 3.86380 3.95589 3.98100 4.05713 4.08220 4.20259 4.29918 4.32249 4.34588 4.35427 4.37589 4.39635 4.47496 4.53411 4.65989 4.67495 4.69371 4.72768 4.76154 4.84758 4.93321 4.99472 5.06964 5.14326 5.14924 5.18170 5.28433 5.49371 5.50899 5.64596 6.02305 6.07586 6.29014 6.31139 6.58005 6.70962 6.84593 6.90690 7.38550 8.90088 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002234 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.502363 B =12532.760566 C =13447.097628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.141 3.859 4 C -0.237 4.237 5 C -0.010 4.010 6 C -0.113 4.113 7 C -0.237 4.237 8 C 0.139 3.861 9 O -0.330 6.330 10 C 0.017 3.983 11 C -0.020 4.020 12 O -0.321 6.321 13 C 0.048 3.952 14 C 0.132 3.868 15 H 0.094 0.906 16 O -0.555 6.555 17 C 0.032 3.968 18 N -0.541 5.541 19 C 0.039 3.961 20 C 0.208 3.792 21 C -0.523 4.523 22 H 0.060 0.940 23 C 0.000 4.000 24 N -0.934 5.934 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.380 0.620 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.072 0.928 48 H -0.036 1.036 49 H 0.006 0.994 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 26.376 -11.532 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.094 3.906 4 C -0.256 4.256 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.256 4.256 8 C 0.092 3.908 9 O -0.243 6.243 10 C -0.077 4.077 11 C -0.065 4.065 12 O -0.238 6.238 13 C -0.027 4.027 14 C 0.072 3.928 15 H 0.112 0.888 16 O -0.361 6.361 17 C -0.097 4.097 18 N -0.265 5.265 19 C -0.109 4.109 20 C 0.082 3.918 21 C -0.561 4.561 22 H 0.079 0.921 23 C -0.198 4.198 24 N -0.575 5.575 25 Si 0.796 3.204 26 H -0.190 1.190 27 H -0.202 1.202 28 H -0.202 1.202 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.032 0.968 47 H 0.091 0.909 48 H -0.018 1.018 49 H 0.024 0.976 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.842 25.574 -12.266 32.488 hybrid contribution 0.408 -0.076 1.478 1.536 sum -15.434 25.498 -10.787 31.697 Atomic orbital electron populations 1.23413 0.76063 1.05611 1.02627 1.86178 1.23684 1.26204 1.87900 1.19219 0.90485 0.86018 0.94844 1.21248 1.01205 0.90484 1.12669 1.19940 0.93071 0.95884 0.92187 1.20914 0.99447 0.92711 1.03889 1.21238 0.94403 0.97260 1.12695 1.19229 0.83458 0.93010 0.95056 1.86159 1.16787 1.33362 1.88010 1.23416 1.00046 0.81543 1.02714 1.17522 0.87543 0.85084 1.16340 1.86199 1.70412 1.38505 1.28664 1.23340 0.98681 0.95544 0.85172 1.21687 0.92936 0.84877 0.93314 0.88796 1.86574 1.40760 1.58875 1.49867 1.22650 0.97707 0.92719 0.96600 1.61906 1.15515 1.25316 1.23745 1.22246 0.91332 0.99512 0.97809 1.19417 0.94064 0.93006 0.85312 1.21485 1.36758 1.04714 0.93131 0.92133 1.25923 0.96960 1.02198 0.94669 1.70088 1.48618 1.39603 0.99167 0.85304 0.77998 0.78582 0.78550 1.18978 1.20228 1.20241 0.86795 0.91106 0.91148 0.82355 0.89305 0.89904 0.89920 0.82366 0.91010 0.91106 0.86848 0.92339 0.92305 0.77180 0.90713 0.94446 0.92260 0.96790 0.90913 1.01830 0.97568 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.08 10.28 -79.53 -0.82 -8.90 16 3 C 0.14 3.50 6.70 22.55 0.15 3.65 16 4 C -0.24 -4.13 8.69 22.37 0.19 -3.93 16 5 C -0.01 -0.16 5.88 -19.87 -0.12 -0.27 16 6 C -0.11 -0.79 10.01 71.23 0.71 -0.07 16 7 C -0.24 -4.13 8.69 22.37 0.19 -3.93 16 8 C 0.14 3.46 6.70 22.55 0.15 3.61 16 9 O -0.33 -8.19 10.28 -79.53 -0.82 -9.01 16 10 C 0.02 0.23 9.81 113.37 1.11 1.34 16 11 C -0.02 -0.58 5.75 22.62 0.13 -0.45 16 12 O -0.32 -10.98 9.59 -67.66 -0.65 -11.63 16 13 C 0.05 1.50 5.70 71.98 0.41 1.91 16 14 C 0.13 4.55 3.21 30.60 0.10 4.65 16 15 H 0.09 3.42 6.26 -2.39 -0.01 3.41 16 16 O -0.56 -20.46 13.25 -144.34 -1.91 -22.37 16 17 C 0.03 1.22 4.60 86.30 0.40 1.62 16 18 N -0.54 -25.19 4.70 -927.04 -4.36 -29.55 16 19 C 0.04 1.66 9.17 127.69 1.17 2.83 16 20 C 0.21 11.58 4.72 85.55 0.40 11.98 16 21 C -0.52 -30.88 8.52 25.60 0.22 -30.66 16 22 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 23 C 0.00 0.02 5.46 84.65 0.46 0.48 16 24 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 25 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 31 H 0.07 0.73 7.67 -2.38 -0.02 0.71 16 32 H 0.16 1.79 6.29 -2.91 -0.02 1.77 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 35 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 36 H 0.16 1.79 6.29 -2.91 -0.02 1.77 16 37 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 38 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.38 11.60 9.05 -74.06 -0.67 10.93 16 43 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 44 H 0.04 1.37 8.12 -2.39 -0.02 1.36 16 45 H 0.06 2.66 6.86 -2.39 -0.02 2.65 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 2.71 6.21 -2.38 -0.01 2.69 16 48 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 49 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 50 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.86 409.77 0.83 -78.03 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.27 Total: 18.65 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.80 Total: -5.92 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -4.07 Total: -86.55 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -4.20 Total: -51.91 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.86 0.83 -78.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.798 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds