Wall clock time and date at job start Tue Mar 31 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36005 * 116.99853 * 2 1 4 4 C 1.38662 * 120.04568 * 0.25671 * 3 2 1 5 5 C 1.38222 * 120.09181 * 180.25170 * 4 3 2 6 6 C 1.50699 * 119.91506 * 179.72451 * 5 4 3 7 7 C 1.38229 * 120.17792 * 359.74434 * 5 4 3 8 8 C 1.38662 * 120.08845 * 0.02562 * 7 5 4 9 9 O 1.35999 * 120.04649 * 180.02562 * 8 7 5 10 10 C 1.42902 * 116.99712 * 359.97438 * 9 8 7 11 11 C 1.38977 * 119.91361 * 359.97438 * 8 7 5 12 12 O 1.36092 * 120.09234 * 179.97438 * 11 8 7 13 13 C 1.42900 * 117.00059 * 90.00014 * 12 11 8 14 14 C 1.52996 * 109.46864 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47555 * 304.99592 * 14 13 12 16 16 O 1.42901 * 109.47612 * 65.00114 * 14 13 12 17 17 C 1.53000 * 109.47000 * 185.00102 * 14 13 12 18 18 N 1.46905 * 109.47114 * 180.02562 * 17 14 13 19 19 C 1.46900 * 110.99850 * 293.94896 * 18 17 14 20 20 C 1.46906 * 111.00051 * 169.99929 * 18 17 14 21 21 C 1.50699 * 109.47140 * 189.99841 * 20 18 17 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 18 23 23 C 1.37873 * 119.99861 * 180.02562 * 21 20 18 24 24 N 1.31522 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99980 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47229 * 89.99965 * 25 23 21 27 27 H 1.48500 * 109.46876 * 209.99805 * 25 23 21 28 28 H 1.48499 * 109.47161 * 329.99530 * 25 23 21 29 29 H 1.08997 * 109.47160 * 60.00370 * 1 2 3 30 30 H 1.09002 * 109.46518 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47321 * 299.99472 * 1 2 3 32 32 H 1.08000 * 119.95310 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47260 * 270.02380 * 6 5 4 34 34 H 1.08998 * 109.47101 * 30.01702 * 6 5 4 35 35 H 1.08997 * 109.47554 * 150.02401 * 6 5 4 36 36 H 1.08006 * 119.95985 * 179.97438 * 7 5 4 37 37 H 1.08994 * 109.47242 * 60.00177 * 10 9 8 38 38 H 1.09000 * 109.46882 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.47215 * 299.99986 * 10 9 8 40 40 H 1.08995 * 109.47124 * 60.00233 * 13 12 11 41 41 H 1.08998 * 109.47048 * 299.99587 * 13 12 11 42 42 H 0.96697 * 113.99735 * 59.99435 * 16 14 13 43 43 H 1.08997 * 109.47704 * 60.00204 * 17 14 13 44 44 H 1.09000 * 109.47058 * 299.99530 * 17 14 13 45 45 H 1.08996 * 109.47030 * 296.04770 * 19 18 17 46 46 H 1.08999 * 109.46702 * 56.04909 * 19 18 17 47 47 H 1.08996 * 109.46890 * 176.04778 * 19 18 17 48 48 H 1.09004 * 109.47040 * 309.99779 * 20 18 17 49 49 H 1.09000 * 109.47033 * 69.99731 * 20 18 17 50 50 H 0.96992 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 0.0054 5 6 1.9185 3.6074 0.0001 6 6 1.0948 4.8694 -0.0003 7 6 3.2986 3.6852 -0.0052 8 6 4.0602 2.5265 -0.0058 9 8 5.4180 2.6040 -0.0104 10 6 5.9930 3.9122 -0.0151 11 6 3.4342 1.2857 -0.0005 12 8 4.1781 0.1461 -0.0016 13 6 4.5385 -0.3947 1.2711 14 6 5.3662 -1.6655 1.0694 15 1 4.8127 -2.3638 0.4415 16 8 6.6032 -1.3329 0.4360 17 6 5.6463 -2.3126 2.4272 18 7 6.4415 -3.5325 2.2335 19 6 5.6711 -4.5541 1.5119 20 6 6.9305 -4.0516 3.5179 21 6 7.9344 -5.1473 3.2674 22 1 8.1839 -5.4301 2.2553 23 6 8.5336 -5.7894 4.3302 24 7 8.2294 -5.4454 5.5627 25 14 9.7785 -7.1471 4.0197 26 1 11.1393 -6.5596 3.9286 27 1 9.7348 -8.1237 5.1376 28 1 9.4510 -7.8373 2.7464 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.2136 2.3187 0.0100 33 1 0.8924 5.1708 -1.0281 34 1 0.1529 4.6886 0.5175 35 1 1.6433 5.6615 0.5093 36 1 3.7845 4.6498 -0.0097 37 1 5.6719 4.4535 0.8747 38 1 7.0800 3.8312 -0.0191 39 1 5.6659 4.4497 -0.9052 40 1 3.6357 -0.6349 1.8326 41 1 5.1262 0.3381 1.8240 42 1 7.1490 -0.7139 0.9399 43 1 4.7028 -2.5665 2.9103 44 1 6.1998 -1.6145 3.0551 45 1 4.8153 -4.8572 2.1151 46 1 5.3210 -4.1435 0.5649 47 1 6.3053 -5.4196 1.3204 48 1 7.4044 -3.2459 4.0787 49 1 6.0934 -4.4499 4.0912 50 1 8.6507 -5.8974 6.3103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414167630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:31 Heat of formation + Delta-G solvation = -127.545762 kcal Electronic energy + Delta-G solvation = -30006.847501 eV Core-core repulsion = 25807.947259 eV Total energy + Delta-G solvation = -4198.900241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01148 -39.22537 -38.47040 -37.17063 -36.93452 -35.21682 -32.47272 -32.08783 -30.08965 -29.91458 -28.11086 -28.04913 -27.19682 -26.47913 -25.56041 -23.80088 -22.25306 -21.85552 -21.30265 -20.13699 -18.61986 -17.46474 -17.42632 -16.78184 -16.61840 -16.29310 -15.87039 -15.76222 -15.69235 -15.03969 -14.86167 -14.65553 -14.37278 -14.19472 -13.99230 -13.74443 -13.60888 -13.27678 -13.15794 -12.91934 -12.59659 -12.36541 -12.26280 -12.07094 -11.85430 -11.81510 -11.77418 -11.37386 -11.26168 -11.02262 -10.84276 -10.72443 -10.67024 -10.58359 -10.19260 -9.91212 -9.82191 -9.53740 -9.08621 -8.45784 -8.38592 -8.32655 -7.13573 -5.98126 -3.98697 0.89778 1.09668 2.59904 3.14590 3.36628 3.39883 3.41928 3.46650 3.71989 4.34153 4.47179 4.57334 4.69867 4.72702 4.80878 4.83767 4.86384 4.88791 4.89842 5.00506 5.16666 5.18203 5.20708 5.24053 5.26309 5.27008 5.36960 5.43654 5.44229 5.61791 5.65022 5.76066 5.76940 5.92104 6.11776 6.12446 6.17196 6.27400 6.40016 6.49343 6.85313 6.89541 7.03779 7.32056 7.38081 7.66132 7.85913 8.10647 8.20847 8.27413 8.60910 9.09546 9.65268 11.12920 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002236 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.611572 B =12521.813545 C =13426.163017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.151 3.849 4 C -0.237 4.237 5 C -0.016 4.016 6 C -0.115 4.115 7 C -0.237 4.237 8 C 0.153 3.847 9 O -0.297 6.297 10 C 0.025 3.975 11 C 0.027 3.973 12 O -0.299 6.299 13 C 0.037 3.963 14 C 0.119 3.881 15 H 0.102 0.898 16 O -0.536 6.536 17 C 0.028 3.972 18 N -0.528 5.528 19 C 0.036 3.964 20 C 0.193 3.807 21 C -0.503 4.503 22 H 0.064 0.936 23 C 0.053 3.947 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.288 1.288 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.369 0.631 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.009 0.991 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.028 0.972 49 H -0.010 1.010 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.004 23.347 -10.922 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.105 3.895 4 C -0.256 4.256 5 C -0.017 4.017 6 C -0.171 4.171 7 C -0.256 4.256 8 C 0.106 3.894 9 O -0.209 6.209 10 C -0.070 4.070 11 C -0.018 4.018 12 O -0.215 6.215 13 C -0.039 4.039 14 C 0.059 3.941 15 H 0.120 0.880 16 O -0.340 6.340 17 C -0.101 4.101 18 N -0.252 5.252 19 C -0.112 4.112 20 C 0.068 3.932 21 C -0.542 4.542 22 H 0.083 0.917 23 C -0.148 4.148 24 N -0.541 5.541 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.214 1.214 28 H -0.198 1.198 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.215 0.785 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.046 0.954 49 H 0.007 0.993 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.476 22.539 -11.620 30.241 hybrid contribution -0.282 -0.016 1.249 1.281 sum -16.758 22.523 -10.371 29.928 Atomic orbital electron populations 1.23129 0.78227 1.04299 1.01290 1.86211 1.21315 1.25773 1.87901 1.19029 0.90759 0.84997 0.94760 1.20910 1.00008 0.91125 1.13552 1.19445 0.93003 0.94702 0.94516 1.20819 0.99333 0.94320 1.02669 1.20926 0.93949 0.97224 1.13496 1.19025 0.83181 0.92617 0.94541 1.86235 1.16374 1.30486 1.87775 1.23135 0.99603 0.83012 1.01216 1.17055 0.86524 0.85296 1.12966 1.86262 1.69514 1.37173 1.28511 1.23582 0.98927 0.96485 0.84891 1.21876 0.84842 0.92559 0.94815 0.87981 1.86613 1.30817 1.67631 1.48905 1.22619 0.96907 0.95342 0.95270 1.61998 1.35422 1.03658 1.24164 1.22256 0.96035 0.96224 0.96699 1.19757 0.94381 0.95139 0.83952 1.21179 1.22692 1.17251 0.93053 0.91737 1.25001 0.97190 0.97563 0.95032 1.69964 1.43683 1.42440 0.98033 0.86476 0.81596 0.81524 0.77686 1.20629 1.21414 1.19829 0.92524 0.87897 0.92580 0.84930 0.90666 0.91242 0.91224 0.84902 0.92623 0.87808 0.92583 0.92588 0.92839 0.78522 0.95189 0.91055 0.97212 0.93316 0.90758 0.95361 0.99262 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.70 10.28 -34.34 -0.35 -4.06 16 3 C 0.15 1.89 6.70 -39.15 -0.26 1.63 16 4 C -0.24 -2.28 8.69 -39.43 -0.34 -2.62 16 5 C -0.02 -0.14 5.88 -104.63 -0.62 -0.76 16 6 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 7 C -0.24 -2.28 8.69 -39.43 -0.34 -2.63 16 8 C 0.15 1.92 6.70 -39.15 -0.26 1.66 16 9 O -0.30 -3.68 10.28 -34.32 -0.35 -4.03 16 10 C 0.03 0.19 9.81 101.05 0.99 1.18 16 11 C 0.03 0.39 5.75 -39.03 -0.22 0.17 16 12 O -0.30 -4.93 9.59 -48.22 -0.46 -5.39 16 13 C 0.04 0.56 5.70 37.16 0.21 0.77 16 14 C 0.12 2.02 3.12 -26.73 -0.08 1.94 16 15 H 0.10 1.82 6.47 -51.93 -0.34 1.48 16 16 O -0.54 -9.77 13.17 -40.08 -0.53 -10.29 16 17 C 0.03 0.52 4.62 -3.82 -0.02 0.51 16 18 N -0.53 -12.04 4.62 -244.36 -1.13 -13.17 16 19 C 0.04 0.76 9.16 60.06 0.55 1.32 16 20 C 0.19 5.19 4.72 -4.97 -0.02 5.16 16 21 C -0.50 -14.58 8.52 -34.44 -0.29 -14.88 16 22 H 0.06 1.87 7.10 -52.48 -0.37 1.49 16 23 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 24 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 25 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 32 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.13 0.94 6.29 -52.48 -0.33 0.61 16 37 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.37 5.61 9.04 45.56 0.41 6.02 16 43 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.05 0.91 6.30 -51.93 -0.33 0.59 16 47 H 0.07 1.65 6.86 -51.93 -0.36 1.30 16 48 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 49 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 409.85 15.07 6.18 6.18 Total: -1.00 -35.59 409.85 -7.80 -43.40 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.41 Total: 0.92 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.54 Total: -4.19 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.39 Total: -39.70 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.70 Total: -23.77 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.59 -7.80 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.150 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds