Wall clock time and date at job start Tue Mar 31 2020 22:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36005 * 116.99853 * 2 1 4 4 C 1.38662 * 120.04568 * 0.25671 * 3 2 1 5 5 C 1.38222 * 120.09181 * 180.25170 * 4 3 2 6 6 C 1.50699 * 119.91506 * 179.72451 * 5 4 3 7 7 C 1.38229 * 120.17792 * 359.74434 * 5 4 3 8 8 C 1.38662 * 120.08845 * 0.02562 * 7 5 4 9 9 O 1.35999 * 120.04649 * 180.02562 * 8 7 5 10 10 C 1.42902 * 116.99712 * 359.97438 * 9 8 7 11 11 C 1.38977 * 119.91361 * 359.97438 * 8 7 5 12 12 O 1.36092 * 120.09234 * 179.97438 * 11 8 7 13 13 C 1.42900 * 117.00059 * 90.00014 * 12 11 8 14 14 C 1.52996 * 109.46864 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47555 * 304.99592 * 14 13 12 16 16 O 1.42901 * 109.47612 * 65.00114 * 14 13 12 17 17 C 1.53000 * 109.47000 * 185.00102 * 14 13 12 18 18 N 1.46905 * 109.47114 * 180.02562 * 17 14 13 19 19 C 1.46900 * 110.99850 * 293.94896 * 18 17 14 20 20 C 1.46906 * 111.00051 * 169.99929 * 18 17 14 21 21 C 1.50699 * 109.47140 * 189.99841 * 20 18 17 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 18 23 23 C 1.37873 * 119.99861 * 180.02562 * 21 20 18 24 24 N 1.31522 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99980 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47229 * 89.99965 * 25 23 21 27 27 H 1.48500 * 109.46876 * 209.99805 * 25 23 21 28 28 H 1.48499 * 109.47161 * 329.99530 * 25 23 21 29 29 H 1.08997 * 109.47160 * 60.00370 * 1 2 3 30 30 H 1.09002 * 109.46518 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47321 * 299.99472 * 1 2 3 32 32 H 1.08000 * 119.95310 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47260 * 270.02380 * 6 5 4 34 34 H 1.08998 * 109.47101 * 30.01702 * 6 5 4 35 35 H 1.08997 * 109.47554 * 150.02401 * 6 5 4 36 36 H 1.08006 * 119.95985 * 179.97438 * 7 5 4 37 37 H 1.08994 * 109.47242 * 60.00177 * 10 9 8 38 38 H 1.09000 * 109.46882 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.47215 * 299.99986 * 10 9 8 40 40 H 1.08995 * 109.47124 * 60.00233 * 13 12 11 41 41 H 1.08998 * 109.47048 * 299.99587 * 13 12 11 42 42 H 0.96697 * 113.99735 * 59.99435 * 16 14 13 43 43 H 1.08997 * 109.47704 * 60.00204 * 17 14 13 44 44 H 1.09000 * 109.47058 * 299.99530 * 17 14 13 45 45 H 1.08996 * 109.47030 * 296.04770 * 19 18 17 46 46 H 1.08999 * 109.46702 * 56.04909 * 19 18 17 47 47 H 1.08996 * 109.46890 * 176.04778 * 19 18 17 48 48 H 1.09004 * 109.47040 * 309.99779 * 20 18 17 49 49 H 1.09000 * 109.47033 * 69.99731 * 20 18 17 50 50 H 0.96992 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 0.0054 5 6 1.9185 3.6074 0.0001 6 6 1.0948 4.8694 -0.0003 7 6 3.2986 3.6852 -0.0052 8 6 4.0602 2.5265 -0.0058 9 8 5.4180 2.6040 -0.0104 10 6 5.9930 3.9122 -0.0151 11 6 3.4342 1.2857 -0.0005 12 8 4.1781 0.1461 -0.0016 13 6 4.5385 -0.3947 1.2711 14 6 5.3662 -1.6655 1.0694 15 1 4.8127 -2.3638 0.4415 16 8 6.6032 -1.3329 0.4360 17 6 5.6463 -2.3126 2.4272 18 7 6.4415 -3.5325 2.2335 19 6 5.6711 -4.5541 1.5119 20 6 6.9305 -4.0516 3.5179 21 6 7.9344 -5.1473 3.2674 22 1 8.1839 -5.4301 2.2553 23 6 8.5336 -5.7894 4.3302 24 7 8.2294 -5.4454 5.5627 25 14 9.7785 -7.1471 4.0197 26 1 11.1393 -6.5596 3.9286 27 1 9.7348 -8.1237 5.1376 28 1 9.4510 -7.8373 2.7464 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.2136 2.3187 0.0100 33 1 0.8924 5.1708 -1.0281 34 1 0.1529 4.6886 0.5175 35 1 1.6433 5.6615 0.5093 36 1 3.7845 4.6498 -0.0097 37 1 5.6719 4.4535 0.8747 38 1 7.0800 3.8312 -0.0191 39 1 5.6659 4.4497 -0.9052 40 1 3.6357 -0.6349 1.8326 41 1 5.1262 0.3381 1.8240 42 1 7.1490 -0.7139 0.9399 43 1 4.7028 -2.5665 2.9103 44 1 6.1998 -1.6145 3.0551 45 1 4.8153 -4.8572 2.1151 46 1 5.3210 -4.1435 0.5649 47 1 6.3053 -5.4196 1.3204 48 1 7.4044 -3.2459 4.0787 49 1 6.0934 -4.4499 4.0912 50 1 8.6507 -5.8974 6.3103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:30 Heat of formation + Delta-G solvation = -153.734713 kcal Electronic energy + Delta-G solvation = -30007.983139 eV Core-core repulsion = 25807.947259 eV Total energy + Delta-G solvation = -4200.035880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82817 -40.00292 -39.77965 -38.46873 -37.73924 -36.85170 -34.62629 -32.88916 -31.49790 -30.65946 -29.24748 -28.72446 -28.61575 -27.86614 -26.56213 -25.49680 -23.02986 -22.99045 -22.59564 -21.84418 -19.50270 -18.61847 -18.29154 -18.23579 -17.69220 -17.55182 -17.14888 -16.83416 -16.71706 -16.44748 -16.03323 -15.79452 -15.62530 -15.39783 -15.31667 -14.88071 -14.65904 -14.37694 -14.17796 -13.99323 -13.76857 -13.47785 -13.31898 -13.21563 -12.98668 -12.83422 -12.63620 -12.61616 -12.55089 -12.44927 -12.41897 -12.40648 -12.06564 -11.98630 -11.65991 -11.41381 -11.34951 -10.95561 -10.81249 -10.61694 -9.21348 -9.18793 -9.00213 -8.20896 -6.30623 0.09159 0.31699 1.41022 1.42954 1.54181 1.88750 2.25678 2.41190 2.70678 2.73553 3.11295 3.31195 3.59684 3.73259 3.86053 3.95669 3.98412 4.06145 4.08365 4.20384 4.30165 4.32481 4.34680 4.35532 4.37741 4.39649 4.48020 4.53570 4.66799 4.67560 4.69758 4.72822 4.76182 4.84783 4.93378 5.00150 5.06323 5.14339 5.15223 5.18226 5.28686 5.49428 5.50946 5.64530 6.02438 6.07714 6.29433 6.31175 6.58139 6.71086 6.84680 6.91242 7.38776 8.90231 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002236 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.611572 B =12521.813545 C =13426.163017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.139 3.861 4 C -0.237 4.237 5 C -0.011 4.011 6 C -0.113 4.113 7 C -0.237 4.237 8 C 0.141 3.859 9 O -0.327 6.327 10 C 0.017 3.983 11 C -0.020 4.020 12 O -0.321 6.321 13 C 0.048 3.952 14 C 0.132 3.868 15 H 0.094 0.906 16 O -0.554 6.554 17 C 0.031 3.969 18 N -0.539 5.539 19 C 0.040 3.960 20 C 0.208 3.792 21 C -0.523 4.523 22 H 0.061 0.939 23 C 0.001 3.999 24 N -0.934 5.934 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.280 1.280 28 H -0.266 1.266 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.380 0.620 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.006 0.994 49 H -0.036 1.036 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.053 25.055 -11.678 33.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.256 4.256 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.256 4.256 8 C 0.094 3.906 9 O -0.240 6.240 10 C -0.077 4.077 11 C -0.065 4.065 12 O -0.238 6.238 13 C -0.027 4.027 14 C 0.072 3.928 15 H 0.112 0.888 16 O -0.359 6.359 17 C -0.097 4.097 18 N -0.263 5.263 19 C -0.108 4.108 20 C 0.082 3.918 21 C -0.561 4.561 22 H 0.079 0.921 23 C -0.197 4.197 24 N -0.575 5.575 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.206 1.206 28 H -0.190 1.190 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.228 0.772 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.024 0.976 49 H -0.019 1.019 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.541 24.276 -12.390 32.412 hybrid contribution -0.045 -0.418 1.457 1.517 sum -17.586 23.858 -10.933 31.592 Atomic orbital electron populations 1.23415 0.76003 1.05590 1.02711 1.86161 1.23778 1.26357 1.88018 1.19224 0.90493 0.85970 0.95047 1.21234 1.01189 0.90471 1.12690 1.19937 0.93081 0.95874 0.92193 1.20914 0.99440 0.92716 1.03890 1.21246 0.94402 0.97295 1.12666 1.19225 0.83554 0.92957 0.94861 1.86183 1.16652 1.33237 1.87904 1.23412 1.00094 0.81578 1.02625 1.17522 0.87451 0.85179 1.16326 1.86197 1.70309 1.38581 1.28680 1.23335 0.98668 0.95552 0.85182 1.21669 0.84702 0.93299 0.93097 0.88840 1.86566 1.31517 1.68160 1.49694 1.22647 0.96640 0.93731 0.96729 1.61903 1.37340 1.05073 1.21995 1.22226 0.95521 0.95476 0.97567 1.19418 0.93136 0.93948 0.85293 1.21453 1.23483 1.18157 0.93052 0.92121 1.25921 0.99120 1.00015 0.94665 1.70081 1.44775 1.43663 0.98958 0.85359 0.78857 0.78324 0.77930 1.19807 1.20570 1.19025 0.91014 0.86839 0.91109 0.82355 0.89304 0.89911 0.89915 0.82368 0.91115 0.86816 0.91132 0.92274 0.92394 0.77215 0.94451 0.90774 0.96853 0.90960 0.92326 0.97567 1.01874 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.16 10.28 -79.66 -0.82 -8.98 16 3 C 0.14 3.46 6.70 22.55 0.15 3.61 16 4 C -0.24 -4.12 8.69 22.37 0.19 -3.93 16 5 C -0.01 -0.16 5.88 -19.87 -0.12 -0.27 16 6 C -0.11 -0.79 10.01 71.24 0.71 -0.08 16 7 C -0.24 -4.15 8.69 22.37 0.19 -3.95 16 8 C 0.14 3.51 6.70 22.55 0.15 3.66 16 9 O -0.33 -8.13 10.28 -79.60 -0.82 -8.95 16 10 C 0.02 0.23 9.81 113.37 1.11 1.34 16 11 C -0.02 -0.58 5.75 22.63 0.13 -0.45 16 12 O -0.32 -10.98 9.59 -67.65 -0.65 -11.63 16 13 C 0.05 1.50 5.70 71.98 0.41 1.91 16 14 C 0.13 4.56 3.12 30.59 0.10 4.65 16 15 H 0.09 3.37 6.47 -2.39 -0.02 3.36 16 16 O -0.55 -20.47 13.17 -144.34 -1.90 -22.37 16 17 C 0.03 1.19 4.62 86.30 0.40 1.59 16 18 N -0.54 -25.06 4.62 -927.03 -4.28 -29.35 16 19 C 0.04 1.71 9.16 127.69 1.17 2.88 16 20 C 0.21 11.57 4.72 85.56 0.40 11.98 16 21 C -0.52 -30.88 8.52 25.60 0.22 -30.66 16 22 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 23 C 0.00 0.04 5.46 84.65 0.46 0.50 16 24 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 25 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 29 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 32 H 0.16 1.78 6.29 -2.91 -0.02 1.76 16 33 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 35 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 36 H 0.16 1.80 6.29 -2.91 -0.02 1.79 16 37 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.38 11.79 9.04 -74.06 -0.67 11.12 16 43 H 0.04 1.37 8.12 -2.39 -0.02 1.35 16 44 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 2.70 6.30 -2.39 -0.02 2.69 16 47 H 0.06 2.64 6.86 -2.39 -0.02 2.63 16 48 H 0.01 0.37 7.93 -2.38 -0.02 0.35 16 49 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 50 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -78.58 409.85 0.91 -77.66 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.27 Total: 18.85 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.80 Total: -5.88 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.00 Total: -86.36 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -4.19 Total: -51.93 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.58 0.91 -77.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.070 kcal (2) G-P(sol) polarization free energy of solvation -78.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds