Wall clock time and date at job start Tue Mar 31 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29031 * 124.91659 * 2 1 4 4 C 1.31784 * 117.12295 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74493 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46930 * 95.43625 * 5 4 3 7 7 C 1.46896 * 111.00489 * 160.66120 * 6 5 4 8 8 C 1.50707 * 109.46899 * 287.93785 * 7 6 5 9 9 H 1.07999 * 119.99924 * 3.31681 * 8 7 6 10 10 C 1.37878 * 119.99540 * 183.31340 * 8 7 6 11 11 N 1.31510 * 120.00468 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99554 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47118 * 90.00431 * 12 10 8 14 14 H 1.48505 * 109.47137 * 210.00359 * 12 10 8 15 15 H 1.48498 * 109.47274 * 330.00117 * 12 10 8 16 16 C 1.46903 * 111.00140 * 284.61857 * 6 5 4 17 17 C 1.52992 * 109.47390 * 170.00103 * 16 6 5 18 18 N 1.46901 * 109.47370 * 179.97438 * 17 16 6 19 19 C 1.47013 * 111.00034 * 293.63619 * 18 17 16 20 20 C 1.53103 * 109.25940 * 177.60409 * 19 18 17 21 21 O 1.43019 * 109.25742 * 56.84511 * 20 19 18 22 22 C 1.43020 * 113.74048 * 301.33302 * 21 20 19 23 23 C 1.47018 * 111.00451 * 169.99631 * 18 17 16 24 24 C 1.33633 * 114.50373 * 0.22782 * 4 3 2 25 25 C 1.50700 * 126.03972 * 179.76575 * 24 4 3 26 26 S 1.70977 * 124.91764 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47457 * 90.00063 * 1 2 3 28 28 H 1.09003 * 109.47014 * 210.00396 * 1 2 3 29 29 H 1.09006 * 109.47192 * 329.99844 * 1 2 3 30 30 H 1.09000 * 109.47626 * 335.43746 * 5 4 3 31 31 H 1.09002 * 109.46893 * 215.43229 * 5 4 3 32 32 H 1.09005 * 109.47028 * 47.93197 * 7 6 5 33 33 H 1.08992 * 109.47730 * 167.93578 * 7 6 5 34 34 H 0.96998 * 119.99916 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.46879 * 289.99897 * 16 6 5 36 36 H 1.08996 * 109.47119 * 49.99535 * 16 6 5 37 37 H 1.08999 * 109.47155 * 299.99338 * 17 16 6 38 38 H 1.08996 * 109.47454 * 59.99636 * 17 16 6 39 39 H 1.09000 * 109.50612 * 297.53648 * 19 18 17 40 40 H 1.09002 * 109.50510 * 57.66971 * 19 18 17 41 41 H 1.09000 * 109.50402 * 296.91583 * 20 19 18 42 42 H 1.08991 * 109.54210 * 176.80515 * 20 19 18 43 43 H 1.09004 * 109.50132 * 298.73670 * 22 21 20 44 44 H 1.08995 * 109.54177 * 178.62336 * 22 21 20 45 45 H 1.09001 * 109.50213 * 302.33329 * 23 18 17 46 46 H 1.08995 * 109.50302 * 62.41420 * 23 18 17 47 47 H 1.08998 * 109.47013 * 84.14830 * 25 24 4 48 48 H 1.09006 * 109.47141 * 204.14740 * 25 24 4 49 49 H 1.09000 * 109.47188 * 324.14741 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.9492 2.3117 1.3774 7 6 6.2045 3.0744 1.3985 8 6 7.3452 2.1755 0.9959 9 1 7.1500 1.1561 0.6974 10 6 8.6380 2.6547 1.0086 11 7 8.8757 3.8959 1.3726 12 14 10.0519 1.5404 0.5103 13 1 10.2857 1.6609 -0.9512 14 1 11.2800 1.9413 1.2427 15 1 9.7143 0.1332 0.8432 16 6 3.8915 3.0182 2.1124 17 6 4.2556 3.0791 3.5971 18 7 3.1983 3.7860 4.3321 19 6 3.1364 5.2004 3.9356 20 6 1.9856 5.8834 4.6793 21 8 2.1735 5.7236 6.0881 22 6 2.2377 4.3584 6.5092 23 6 3.3911 3.6600 5.7841 24 6 3.9354 -0.4006 -0.0058 25 6 5.3574 -0.8994 -0.0127 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 4.0564 2.9082 -0.4283 31 1 5.4029 1.7564 -0.5973 32 1 6.1349 3.9081 0.6998 33 1 6.3806 3.4566 2.4039 34 1 9.7852 4.2331 1.3811 35 1 3.7913 4.0306 1.7211 36 1 2.9477 2.4867 1.9912 37 1 4.3558 2.0667 3.9885 38 1 5.1995 3.6105 3.7183 39 1 4.0760 5.6910 4.1898 40 1 2.9676 5.2701 2.8610 41 1 1.0404 5.4278 4.3843 42 1 1.9708 6.9448 4.4321 43 1 1.2997 3.8585 6.2673 44 1 2.4057 4.3163 7.5853 45 1 3.4082 2.6052 6.0587 46 1 4.3351 4.1252 6.0676 47 1 5.7388 -0.9238 1.0081 48 1 5.3883 -1.9033 -0.4362 49 1 5.9738 -0.2318 -0.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443607560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:49 Heat of formation + Delta-G solvation = 7.473737 kcal Electronic energy + Delta-G solvation = -28235.541570 eV Core-core repulsion = 24517.541836 eV Total energy + Delta-G solvation = -3717.999735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.77494 -39.42044 -36.97825 -35.27709 -33.17949 -32.52000 -31.15902 -30.12290 -29.62896 -27.87550 -26.65173 -24.92928 -24.16122 -23.91863 -22.41771 -22.05532 -20.38859 -19.65562 -18.46678 -17.56566 -16.66683 -16.33405 -16.08852 -15.36773 -15.02669 -14.99578 -14.84484 -14.59819 -14.51935 -14.15708 -13.72566 -13.48075 -13.20437 -13.16270 -12.98403 -12.80724 -12.57373 -12.19435 -12.13225 -11.97108 -11.91955 -11.69008 -11.48958 -11.33918 -11.11941 -10.95755 -10.77127 -10.69537 -10.62026 -10.53028 -10.22247 -9.79420 -9.62723 -9.33698 -9.25783 -8.92626 -8.49019 -8.23796 -8.14477 -7.29026 -6.06651 -4.07977 1.01752 1.59102 1.98607 3.10341 3.27483 3.34841 3.37096 3.79577 3.97240 4.31217 4.39304 4.91426 5.02543 5.09684 5.12103 5.18400 5.24456 5.30715 5.33564 5.36397 5.41531 5.45708 5.49562 5.55535 5.61088 5.66585 5.78676 5.84457 5.85977 5.92644 5.94491 5.99438 6.03386 6.18081 6.31214 6.35294 6.40584 6.50314 6.53343 6.70142 7.07307 7.11623 7.19901 7.26205 7.29346 7.77466 8.02739 8.11333 8.15780 8.49849 8.99271 9.56249 11.04007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006292 B = 0.005004 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4448.901671 B = 5593.766454 C = 9291.477065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.033 3.967 3 N -0.460 5.460 4 C 0.074 3.926 5 C 0.139 3.861 6 N -0.528 5.528 7 C 0.191 3.809 8 C -0.506 4.506 9 H 0.066 0.934 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.272 1.272 16 C 0.066 3.934 17 C 0.061 3.939 18 N -0.537 5.537 19 C 0.014 3.986 20 C 0.066 3.934 21 O -0.389 6.389 22 C 0.066 3.934 23 C 0.018 3.982 24 C -0.186 4.186 25 C -0.072 4.072 26 S 0.075 5.925 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.099 0.901 32 H -0.011 1.011 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.537 -5.512 2.115 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.245 4.245 3 N -0.175 5.175 4 C -0.057 4.057 5 C 0.008 3.992 6 N -0.253 5.253 7 C 0.066 3.934 8 C -0.545 4.545 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.063 4.063 17 C -0.066 4.066 18 N -0.262 5.262 19 C -0.114 4.114 20 C -0.011 4.011 21 O -0.308 6.308 22 C -0.011 4.011 23 C -0.110 4.110 24 C -0.307 4.307 25 C -0.131 4.131 26 S 0.329 5.671 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.006 0.994 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.209 -6.437 2.396 17.604 hybrid contribution 2.111 1.072 -0.622 2.448 sum -14.098 -5.365 1.773 15.188 Atomic orbital electron populations 1.20340 0.85785 1.03742 1.03269 1.26710 1.01166 0.90885 1.05733 1.66119 1.04948 1.31433 1.15005 1.20262 0.89362 0.94480 1.01565 1.20449 0.94733 0.92086 0.91956 1.61940 1.04065 1.47721 1.11606 1.19825 0.84516 0.91925 0.97155 1.21187 0.90500 0.98496 1.44298 0.91553 1.24971 0.98853 0.95059 0.95577 1.69949 1.20662 1.14868 1.48262 0.86578 0.81854 0.81021 0.78472 1.20743 1.21346 1.19689 1.21936 0.95714 0.96210 0.92449 1.22135 0.91676 0.98705 0.94080 1.62169 1.47820 1.11789 1.04466 1.22824 0.98587 0.88791 1.01206 1.22662 0.97322 1.00548 0.80589 1.87952 1.93882 1.25624 1.23316 1.22640 0.97660 0.82258 0.98565 1.22739 0.98110 1.01520 0.88642 1.25651 0.99648 0.95070 1.10333 1.20289 0.88528 1.00181 1.04115 1.83688 0.99098 1.13536 1.70817 0.90182 0.90607 0.89608 0.94482 0.88249 0.99359 0.94547 0.92945 0.96162 0.90863 0.90376 0.93593 0.93842 0.89375 0.92460 0.88705 0.92485 0.88763 0.89769 0.93946 0.89590 0.92348 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.46 36.00 0.38 -0.32 16 2 C 0.03 0.47 7.39 -13.46 -0.10 0.37 16 3 N -0.46 -7.83 9.93 -8.06 -0.08 -7.91 16 4 C 0.07 1.32 5.65 -84.22 -0.48 0.84 16 5 C 0.14 2.72 4.92 -4.97 -0.02 2.69 16 6 N -0.53 -11.05 4.37 -237.52 -1.04 -12.09 16 7 C 0.19 4.71 4.60 -4.97 -0.02 4.69 16 8 C -0.51 -13.28 8.40 -34.44 -0.29 -13.57 16 9 H 0.07 1.67 6.79 -52.49 -0.36 1.32 16 10 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 12 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.07 1.24 4.72 -3.83 -0.02 1.23 16 17 C 0.06 1.10 4.92 -3.83 -0.02 1.08 16 18 N -0.54 -8.29 4.73 -234.31 -1.11 -9.40 16 19 C 0.01 0.21 5.44 -3.71 -0.02 0.19 16 20 C 0.07 0.82 7.01 37.21 0.26 1.08 16 21 O -0.39 -5.34 10.83 -35.23 -0.38 -5.73 16 22 C 0.07 0.78 7.01 37.21 0.26 1.04 16 23 C 0.02 0.25 5.65 -3.71 -0.02 0.23 16 24 C -0.19 -3.01 6.59 -35.92 -0.24 -3.25 16 25 C -0.07 -1.10 9.76 36.01 0.35 -0.75 16 26 S 0.07 0.99 23.18 -107.50 -2.49 -1.50 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 31 H 0.10 2.03 5.86 -51.93 -0.30 1.72 16 32 H -0.01 -0.31 8.05 -51.93 -0.42 -0.72 16 33 H 0.04 0.97 5.94 -51.93 -0.31 0.66 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.39 6.49 -51.93 -0.34 0.06 16 36 H 0.07 1.42 6.93 -51.93 -0.36 1.06 16 37 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.05 0.93 6.26 -51.93 -0.32 0.61 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.30 6.38 -51.93 -0.33 0.97 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.41 6.52 -51.93 -0.34 1.07 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -29.96 396.36 -11.60 -41.56 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.12 Total: 1.48 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.07 Total: -3.01 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -1.49 Total: -54.53 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.38 Total: -5.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.96 -11.60 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443607560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.032 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds