Wall clock time and date at job start Tue Mar 31 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29031 * 124.91659 * 2 1 4 4 C 1.31784 * 117.12295 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74493 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46930 * 95.43625 * 5 4 3 7 7 C 1.46896 * 111.00489 * 160.66120 * 6 5 4 8 8 C 1.50707 * 109.46899 * 287.93785 * 7 6 5 9 9 H 1.07999 * 119.99924 * 3.31681 * 8 7 6 10 10 C 1.37878 * 119.99540 * 183.31340 * 8 7 6 11 11 N 1.31510 * 120.00468 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99554 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47118 * 90.00431 * 12 10 8 14 14 H 1.48505 * 109.47137 * 210.00359 * 12 10 8 15 15 H 1.48498 * 109.47274 * 330.00117 * 12 10 8 16 16 C 1.46903 * 111.00140 * 284.61857 * 6 5 4 17 17 C 1.52992 * 109.47390 * 170.00103 * 16 6 5 18 18 N 1.46901 * 109.47370 * 179.97438 * 17 16 6 19 19 C 1.47013 * 111.00034 * 293.63619 * 18 17 16 20 20 C 1.53103 * 109.25940 * 177.60409 * 19 18 17 21 21 O 1.43019 * 109.25742 * 56.84511 * 20 19 18 22 22 C 1.43020 * 113.74048 * 301.33302 * 21 20 19 23 23 C 1.47018 * 111.00451 * 169.99631 * 18 17 16 24 24 C 1.33633 * 114.50373 * 0.22782 * 4 3 2 25 25 C 1.50700 * 126.03972 * 179.76575 * 24 4 3 26 26 S 1.70977 * 124.91764 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47457 * 90.00063 * 1 2 3 28 28 H 1.09003 * 109.47014 * 210.00396 * 1 2 3 29 29 H 1.09006 * 109.47192 * 329.99844 * 1 2 3 30 30 H 1.09000 * 109.47626 * 335.43746 * 5 4 3 31 31 H 1.09002 * 109.46893 * 215.43229 * 5 4 3 32 32 H 1.09005 * 109.47028 * 47.93197 * 7 6 5 33 33 H 1.08992 * 109.47730 * 167.93578 * 7 6 5 34 34 H 0.96998 * 119.99916 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.46879 * 289.99897 * 16 6 5 36 36 H 1.08996 * 109.47119 * 49.99535 * 16 6 5 37 37 H 1.08999 * 109.47155 * 299.99338 * 17 16 6 38 38 H 1.08996 * 109.47454 * 59.99636 * 17 16 6 39 39 H 1.09000 * 109.50612 * 297.53648 * 19 18 17 40 40 H 1.09002 * 109.50510 * 57.66971 * 19 18 17 41 41 H 1.09000 * 109.50402 * 296.91583 * 20 19 18 42 42 H 1.08991 * 109.54210 * 176.80515 * 20 19 18 43 43 H 1.09004 * 109.50132 * 298.73670 * 22 21 20 44 44 H 1.08995 * 109.54177 * 178.62336 * 22 21 20 45 45 H 1.09001 * 109.50213 * 302.33329 * 23 18 17 46 46 H 1.08995 * 109.50302 * 62.41420 * 23 18 17 47 47 H 1.08998 * 109.47013 * 84.14830 * 25 24 4 48 48 H 1.09006 * 109.47141 * 204.14740 * 25 24 4 49 49 H 1.09000 * 109.47188 * 324.14741 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.9492 2.3117 1.3774 7 6 6.2045 3.0744 1.3985 8 6 7.3452 2.1755 0.9959 9 1 7.1500 1.1561 0.6974 10 6 8.6380 2.6547 1.0086 11 7 8.8757 3.8959 1.3726 12 14 10.0519 1.5404 0.5103 13 1 10.2857 1.6609 -0.9512 14 1 11.2800 1.9413 1.2427 15 1 9.7143 0.1332 0.8432 16 6 3.8915 3.0182 2.1124 17 6 4.2556 3.0791 3.5971 18 7 3.1983 3.7860 4.3321 19 6 3.1364 5.2004 3.9356 20 6 1.9856 5.8834 4.6793 21 8 2.1735 5.7236 6.0881 22 6 2.2377 4.3584 6.5092 23 6 3.3911 3.6600 5.7841 24 6 3.9354 -0.4006 -0.0058 25 6 5.3574 -0.8994 -0.0127 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 4.0564 2.9082 -0.4283 31 1 5.4029 1.7564 -0.5973 32 1 6.1349 3.9081 0.6998 33 1 6.3806 3.4566 2.4039 34 1 9.7852 4.2331 1.3811 35 1 3.7913 4.0306 1.7211 36 1 2.9477 2.4867 1.9912 37 1 4.3558 2.0667 3.9885 38 1 5.1995 3.6105 3.7183 39 1 4.0760 5.6910 4.1898 40 1 2.9676 5.2701 2.8610 41 1 1.0404 5.4278 4.3843 42 1 1.9708 6.9448 4.4321 43 1 1.2997 3.8585 6.2673 44 1 2.4057 4.3163 7.5853 45 1 3.4082 2.6052 6.0587 46 1 4.3351 4.1252 6.0676 47 1 5.7388 -0.9238 1.0081 48 1 5.3883 -1.9033 -0.4362 49 1 5.9738 -0.2318 -0.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443607560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:48 Heat of formation + Delta-G solvation = -13.325934 kcal Electronic energy + Delta-G solvation = -28236.443512 eV Core-core repulsion = 24517.541836 eV Total energy + Delta-G solvation = -3718.901676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05675 -40.56318 -38.52166 -36.60965 -34.74143 -34.19824 -32.23589 -31.18424 -31.06126 -29.64647 -28.05024 -26.31490 -25.63769 -25.04985 -24.04723 -23.33007 -21.65488 -21.20061 -19.70685 -18.80826 -18.56519 -17.65231 -17.22456 -16.92198 -16.31318 -16.27771 -16.14973 -16.01685 -15.91645 -15.40256 -15.12507 -14.97917 -14.42069 -14.39514 -14.16643 -14.12412 -14.05044 -13.70224 -13.40614 -13.24406 -13.09853 -12.96701 -12.88856 -12.75839 -12.69344 -12.45263 -12.40204 -12.23428 -12.09551 -11.88049 -11.66172 -11.47858 -11.27490 -10.70676 -10.59161 -10.49563 -10.05579 -9.51134 -9.45396 -9.07525 -8.17385 -6.26148 -0.14519 0.46985 0.81222 1.42542 1.43389 1.54290 1.81523 2.41340 2.59769 2.91222 3.13720 3.20605 3.53900 3.83973 3.90943 3.97711 4.03035 4.10122 4.11849 4.14989 4.22775 4.29919 4.37418 4.44512 4.50739 4.57713 4.61010 4.67112 4.68142 4.72918 4.77136 4.79892 4.85144 4.87853 4.92602 4.99226 5.03491 5.08368 5.19442 5.20370 5.22623 5.38881 5.70490 5.82225 5.90095 6.06565 6.12937 6.29026 6.55225 6.89081 6.92224 7.43044 8.93834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006292 B = 0.005004 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4448.901671 B = 5593.766454 C = 9291.477065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 N -0.495 5.495 4 C 0.056 3.944 5 C 0.145 3.855 6 N -0.526 5.526 7 C 0.209 3.791 8 C -0.513 4.513 9 H 0.075 0.925 10 C 0.003 3.997 11 N -0.938 5.938 12 Si 0.962 3.038 13 H -0.274 1.274 14 H -0.289 1.289 15 H -0.258 1.258 16 C 0.078 3.922 17 C 0.076 3.924 18 N -0.534 5.534 19 C 0.013 3.987 20 C 0.072 3.928 21 O -0.403 6.403 22 C 0.068 3.932 23 C 0.015 3.985 24 C -0.209 4.209 25 C -0.069 4.069 26 S 0.144 5.856 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.025 0.975 31 H 0.085 0.915 32 H -0.045 1.045 33 H 0.012 0.988 34 H 0.261 0.739 35 H 0.011 0.989 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -8.014 2.342 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.246 4.246 3 N -0.210 5.210 4 C -0.074 4.074 5 C 0.015 3.985 6 N -0.250 5.250 7 C 0.083 3.917 8 C -0.551 4.551 9 H 0.093 0.907 10 C -0.195 4.195 11 N -0.579 5.579 12 Si 0.786 3.214 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.182 1.182 16 C -0.051 4.051 17 C -0.052 4.052 18 N -0.259 5.259 19 C -0.115 4.115 20 C -0.005 4.005 21 O -0.322 6.322 22 C -0.008 4.008 23 C -0.113 4.113 24 C -0.331 4.331 25 C -0.128 4.128 26 S 0.399 5.601 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.103 0.897 32 H -0.027 1.027 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.041 0.959 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.138 0.862 45 H 0.115 0.885 46 H 0.045 0.955 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.308 -8.961 2.623 20.552 hybrid contribution 2.626 1.808 -0.702 3.264 sum -15.683 -7.153 1.921 17.344 Atomic orbital electron populations 1.20568 0.82699 1.05042 1.04908 1.27514 1.03014 0.90747 1.03279 1.66096 1.04643 1.33162 1.17145 1.19895 0.89694 0.94208 1.03638 1.20260 0.94856 0.92812 0.90600 1.61920 1.03403 1.46823 1.12894 1.19458 0.86497 0.91104 0.94633 1.21513 0.91009 0.98928 1.43667 0.90667 1.25858 1.01694 0.96395 0.95512 1.70097 1.21214 1.16862 1.49676 0.85490 0.78072 0.79577 0.78213 1.19978 1.21467 1.18154 1.21843 0.95051 0.95396 0.92820 1.21887 0.91117 0.98427 0.93793 1.62219 1.46063 1.12037 1.05628 1.22870 0.98874 0.88412 1.01357 1.22709 0.96364 1.01529 0.79893 1.87940 1.93846 1.26760 1.23645 1.22789 0.97112 0.81249 0.99678 1.22887 0.98502 1.02625 0.87298 1.25831 1.01461 0.95625 1.10146 1.20234 0.88029 1.01377 1.03131 1.83384 0.96067 1.11333 1.69333 0.88238 0.87955 0.89625 0.95698 0.89703 1.02695 0.97010 0.92982 0.97111 0.90475 0.90616 0.96792 0.95909 0.89999 0.91261 0.86802 0.91285 0.86211 0.88452 0.95462 0.90962 0.89499 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.46 71.23 0.75 -0.41 16 2 C 0.03 0.83 7.39 88.52 0.65 1.49 16 3 N -0.49 -16.51 9.93 -179.40 -1.78 -18.29 16 4 C 0.06 2.01 5.65 41.52 0.23 2.25 16 5 C 0.15 5.99 4.92 85.56 0.42 6.41 16 6 N -0.53 -23.21 4.37 -905.36 -3.96 -27.17 16 7 C 0.21 11.04 4.60 85.56 0.39 11.43 16 8 C -0.51 -27.92 8.40 25.60 0.22 -27.70 16 9 H 0.08 3.89 6.79 -2.91 -0.02 3.87 16 10 C 0.00 0.17 5.46 84.66 0.46 0.63 16 11 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16 12 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 16 C 0.08 3.09 4.72 86.30 0.41 3.49 16 17 C 0.08 2.85 4.92 86.30 0.42 3.28 16 18 N -0.53 -16.75 4.73 -895.23 -4.23 -20.98 16 19 C 0.01 0.40 5.44 86.32 0.47 0.87 16 20 C 0.07 1.72 7.01 72.02 0.50 2.23 16 21 O -0.40 -10.48 10.83 -148.98 -1.61 -12.09 16 22 C 0.07 1.48 7.01 72.01 0.50 1.99 16 23 C 0.01 0.40 5.65 86.31 0.49 0.89 16 24 C -0.21 -6.59 6.59 24.64 0.16 -6.43 16 25 C -0.07 -2.06 9.76 71.24 0.70 -1.36 16 26 S 0.14 3.41 23.18 -56.49 -1.31 2.10 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.02 1.06 8.00 -2.39 -0.02 1.04 16 31 H 0.08 3.68 5.86 -2.39 -0.01 3.66 16 32 H -0.04 -2.60 8.05 -2.38 -0.02 -2.62 16 33 H 0.01 0.68 5.94 -2.39 -0.01 0.67 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.01 0.45 6.49 -2.38 -0.02 0.43 16 36 H 0.08 3.04 6.93 -2.39 -0.02 3.03 16 37 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 38 H 0.01 0.61 6.26 -2.39 -0.01 0.60 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 2.54 6.38 -2.39 -0.02 2.52 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 44 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.10 2.31 8.09 -2.39 -0.02 2.29 16 46 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 49 H 0.07 2.32 6.52 -2.39 -0.02 2.30 16 Total: -1.00 -67.39 396.36 -2.87 -70.25 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.93 Total: 17.76 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.78 Total: -0.96 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -9.69 Total: -122.27 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.61 Total: -12.09 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.31 Total: 2.10 kcal Total: -67.39 -2.87 -70.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443607560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.925 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds