Wall clock time and date at job start Tue Mar 31 2020 23:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08994 * 109.47141 * 305.63395 * 3 2 1 5 5 C 1.50698 * 109.47100 * 185.63025 * 3 2 1 6 6 H 1.08000 * 120.00175 * 335.19615 * 5 3 2 7 7 C 1.37873 * 120.00215 * 155.19401 * 5 3 2 8 8 N 1.31520 * 119.99924 * 355.29222 * 7 5 3 9 9 Si 1.86801 * 120.00262 * 175.28866 * 7 5 3 10 10 H 1.48494 * 109.46873 * 90.00144 * 9 7 5 11 11 H 1.48496 * 109.47146 * 330.00247 * 9 7 5 12 12 H 1.48501 * 109.46817 * 210.00050 * 9 7 5 13 13 O 1.45202 * 109.46849 * 65.63347 * 3 2 1 14 14 C 1.34232 * 116.99613 * 269.99606 * 13 3 2 15 15 O 1.20830 * 120.00138 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99977 * 180.02562 * 14 13 3 17 17 H 1.09003 * 115.55921 * 325.75221 * 16 14 13 18 18 C 1.53156 * 117.51653 * 111.58029 * 16 14 13 19 19 C 1.52324 * 59.82093 * 107.44064 * 18 16 14 20 20 C 1.53284 * 128.82159 * 117.89613 * 19 18 16 21 21 N 1.47721 * 85.85822 * 116.62139 * 20 19 18 22 22 C 1.34777 * 134.39852 * 204.06452 * 21 20 19 23 23 O 1.21510 * 120.00239 * 180.02562 * 22 21 20 24 24 O 1.34635 * 119.99893 * 0.04557 * 22 21 20 25 25 C 1.45198 * 117.00206 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47285 * 60.00018 * 25 24 22 27 27 C 1.53000 * 109.47319 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47247 * 300.00213 * 25 24 22 29 29 C 1.47721 * 91.21048 * 24.09608 * 21 20 19 30 30 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 299.99877 * 1 2 3 32 32 H 1.08996 * 109.46723 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47176 * 239.99597 * 2 1 3 34 34 H 1.09003 * 109.47253 * 120.00158 * 2 1 3 35 35 H 0.97006 * 119.99301 * 5.24066 * 8 7 5 36 36 H 1.09002 * 117.51587 * 214.87562 * 18 16 14 37 37 H 1.09001 * 117.51365 * 359.97438 * 18 16 14 38 38 H 1.08993 * 113.81757 * 230.85709 * 20 19 18 39 39 H 1.09001 * 113.80918 * 2.39044 * 20 19 18 40 40 H 1.09002 * 109.46498 * 59.99784 * 26 25 24 41 41 H 1.08991 * 109.47370 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.46594 * 300.00163 * 26 25 24 43 43 H 1.08998 * 109.46970 * 59.99953 * 27 25 24 44 44 H 1.09005 * 109.47287 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46996 * 299.99563 * 27 25 24 46 46 H 1.09000 * 109.47350 * 59.99397 * 28 25 24 47 47 H 1.08999 * 109.47636 * 179.97438 * 28 25 24 48 48 H 1.09007 * 109.47063 * 299.99924 * 28 25 24 49 49 H 1.08999 * 113.81224 * 221.67140 * 29 21 20 50 50 H 1.09000 * 113.91889 * 90.15226 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4448 -0.1394 6 1 4.1133 0.5842 0.1734 7 6 4.1823 2.5454 -0.6662 8 7 3.4804 3.5552 -1.1325 9 14 6.0488 2.6025 -0.7178 10 1 6.5265 2.0212 -1.9980 11 1 6.5995 1.8195 0.4174 12 1 6.5038 4.0123 -0.6139 13 8 1.6688 2.0870 1.2471 14 6 0.4859 2.7208 1.2769 15 8 -0.2163 2.7360 0.2937 16 6 0.0336 3.4133 2.5366 17 1 0.3331 2.9354 3.4694 18 6 -0.0398 4.9429 2.5158 19 6 -1.3182 4.1147 2.5076 20 6 -2.4439 4.0747 3.5472 21 7 -3.3103 4.5996 2.4720 22 6 -4.4607 5.3013 2.4459 23 8 -4.9637 5.6040 1.3821 24 8 -5.0523 5.6671 3.5987 25 6 -6.2891 6.4206 3.4947 26 6 -7.3312 5.5893 2.7437 27 6 -6.8085 6.7443 4.8970 28 6 -6.0308 7.7226 2.7339 29 6 -2.4128 4.0476 1.4366 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.5151 3.5599 -1.0370 36 1 0.2117 5.4717 3.4352 37 1 0.2394 5.4479 1.5911 38 1 -2.7071 3.0683 3.8725 39 1 -2.3023 4.7682 4.3761 40 1 -7.5152 4.6617 3.2858 41 1 -8.2595 6.1550 2.6653 42 1 -6.9609 5.3590 1.7447 43 1 -6.0660 7.3368 5.4316 44 1 -7.7373 7.3096 4.8189 45 1 -6.9926 5.8169 5.4393 46 1 -5.6605 7.4924 1.7349 47 1 -6.9593 8.2880 2.6554 48 1 -5.2884 8.3149 3.2689 49 1 -2.2464 4.7196 0.5947 50 1 -2.6651 3.0331 1.1282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492817488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:19 Heat of formation + Delta-G solvation = -113.096112 kcal Electronic energy + Delta-G solvation = -30454.739724 eV Core-core repulsion = 26256.466067 eV Total energy + Delta-G solvation = -4198.273658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04607 -40.15375 -38.98603 -36.86564 -35.84468 -34.57506 -34.01057 -33.32131 -32.06982 -28.17421 -27.66335 -27.60033 -27.06037 -26.46601 -24.50769 -23.08801 -22.17532 -20.81613 -19.98446 -19.40261 -18.61669 -17.82881 -17.30095 -17.13170 -16.70166 -16.46227 -15.61169 -15.29850 -15.23651 -15.02150 -14.28418 -14.13145 -14.02036 -13.84242 -13.50512 -13.36254 -13.24358 -12.81565 -12.75509 -12.58889 -12.43376 -12.23879 -12.12996 -12.08496 -11.72181 -11.67912 -11.52589 -11.23845 -10.96367 -10.93173 -10.88789 -10.81706 -10.67823 -10.54531 -10.33546 -10.22901 -10.06930 -9.94596 -9.60412 -9.24442 -8.87557 -8.75432 -8.49404 -6.66065 -4.46012 1.84402 2.73682 2.88412 3.27190 3.34897 3.45751 3.52696 3.61641 3.83430 4.26549 4.35477 4.44722 4.47738 4.51503 4.65716 4.81576 5.04787 5.15522 5.17090 5.20000 5.22667 5.28070 5.37700 5.42710 5.50132 5.55749 5.61851 5.62530 5.66096 5.73505 5.76494 5.79414 5.84758 5.86605 5.94418 6.01976 6.06674 6.11434 6.17020 6.36722 6.51663 6.65069 6.74539 6.86426 7.08447 7.58247 7.67682 7.93024 8.18535 8.24941 8.54991 8.86521 9.33227 10.70302 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002301 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.930331 B =12168.118817 C =12617.021905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.188 3.812 4 H 0.053 0.947 5 C -0.589 4.589 6 H 0.062 0.938 7 C 0.030 3.970 8 N -0.881 5.881 9 Si 1.077 2.923 10 H -0.284 1.284 11 H -0.284 1.284 12 H -0.281 1.281 13 O -0.353 6.353 14 C 0.476 3.524 15 O -0.524 6.524 16 C -0.136 4.136 17 H 0.134 0.866 18 C -0.108 4.108 19 C -0.158 4.158 20 C 0.151 3.849 21 N -0.632 5.632 22 C 0.675 3.325 23 O -0.568 6.568 24 O -0.363 6.363 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.184 4.184 29 C 0.188 3.812 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.275 0.725 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 4.420 13.086 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.071 0.929 5 C -0.625 4.625 6 H 0.080 0.920 7 C -0.179 4.179 8 N -0.515 5.515 9 Si 0.903 3.097 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.206 1.206 13 O -0.269 6.269 14 C 0.320 3.680 15 O -0.415 6.415 16 C -0.156 4.156 17 H 0.152 0.848 18 C -0.145 4.145 19 C -0.159 4.159 20 C 0.028 3.972 21 N -0.375 5.375 22 C 0.432 3.568 23 O -0.457 6.457 24 O -0.279 6.279 25 C 0.098 3.902 26 C -0.240 4.240 27 C -0.197 4.197 28 C -0.241 4.241 29 C 0.068 3.932 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.480 5.542 11.935 20.317 hybrid contribution -1.421 -0.991 0.571 1.824 sum -16.901 4.550 12.505 21.512 Atomic orbital electron populations 1.21861 0.97076 0.99523 1.01826 1.21836 0.94201 0.98661 1.01500 1.20888 0.95479 0.88409 0.81516 0.92912 1.22059 0.90458 1.04464 1.45497 0.91986 1.26195 1.07765 0.92161 0.91778 1.70759 1.09577 1.32260 1.38919 0.83452 0.73095 0.76458 0.76699 1.20988 1.20949 1.20641 1.87004 1.32862 1.61742 1.45301 1.22283 0.81330 0.76795 0.87609 1.90562 1.55487 1.59269 1.36231 1.21873 0.98800 0.96379 0.98595 0.84830 1.22866 0.95674 0.91146 1.04835 1.22554 0.88316 1.06098 0.98908 1.22676 0.83679 0.99608 0.91192 1.48621 1.21338 1.55094 1.12421 1.17395 0.79183 0.77870 0.82387 1.90903 1.64192 1.59917 1.30703 1.86299 1.39348 1.69190 1.33016 1.22061 0.80550 0.90634 0.96933 1.22514 0.98489 1.00003 1.03042 1.21849 1.01279 1.02527 0.93995 1.22521 1.02638 0.95884 1.03039 1.22547 0.80312 0.99383 0.90935 0.94352 0.93747 0.92556 0.91372 0.92761 0.91309 0.86963 0.87272 0.88822 0.89353 0.92237 0.91178 0.89363 0.91485 0.90179 0.91535 0.89322 0.91207 0.92170 0.89167 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.57 37.16 0.32 -2.45 16 2 C -0.12 -2.66 5.62 -26.73 -0.15 -2.81 16 3 C 0.19 4.73 1.97 -27.88 -0.05 4.67 16 4 H 0.05 1.47 5.69 -51.93 -0.30 1.17 16 5 C -0.59 -16.02 8.70 -34.44 -0.30 -16.32 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.03 0.82 5.45 -17.82 -0.10 0.73 16 8 N -0.88 -25.81 13.63 55.43 0.76 -25.06 16 9 Si 1.08 23.91 29.91 -169.99 -5.08 18.83 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -8.36 9.81 -39.26 -0.39 -8.75 16 14 C 0.48 9.67 6.23 36.01 0.22 9.89 16 15 O -0.52 -11.37 12.28 -18.75 -0.23 -11.60 16 16 C -0.14 -2.02 6.30 -92.03 -0.58 -2.60 16 17 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 18 C -0.11 -1.42 10.24 -27.00 -0.28 -1.70 16 19 C -0.16 -2.03 3.03 -155.02 -0.47 -2.50 16 20 C 0.15 1.60 8.89 -3.23 -0.03 1.57 16 21 N -0.63 -8.63 3.61 -187.60 -0.68 -9.31 16 22 C 0.68 10.00 8.22 54.06 0.44 10.44 16 23 O -0.57 -9.64 12.61 -19.28 -0.24 -9.89 16 24 O -0.36 -4.64 9.87 -40.31 -0.40 -5.04 16 25 C 0.13 1.39 1.13 -90.62 -0.10 1.28 16 26 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 27 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 28 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 29 C 0.19 2.73 7.27 -3.23 -0.02 2.71 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.84 6.04 -51.93 -0.31 0.53 16 32 H 0.06 1.12 7.83 -51.93 -0.41 0.72 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.28 8.23 6.66 -40.82 -0.27 7.95 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 49 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 50 H 0.10 1.47 8.01 -51.93 -0.42 1.05 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -32.17 404.34 -8.60 -40.77 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.28 Total: 4.80 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.14 Total: -0.85 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.08 Total: -34.37 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.26 Total: -35.28 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.17 -8.60 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492817488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.324 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds