Wall clock time and date at job start Tue Mar 31 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08994 * 109.47141 * 305.63395 * 3 2 1 5 5 C 1.50698 * 109.47100 * 185.63025 * 3 2 1 6 6 H 1.08000 * 120.00175 * 335.19615 * 5 3 2 7 7 C 1.37873 * 120.00215 * 155.19401 * 5 3 2 8 8 N 1.31520 * 119.99924 * 355.29222 * 7 5 3 9 9 Si 1.86801 * 120.00262 * 175.28866 * 7 5 3 10 10 H 1.48494 * 109.46873 * 90.00144 * 9 7 5 11 11 H 1.48496 * 109.47146 * 330.00247 * 9 7 5 12 12 H 1.48501 * 109.46817 * 210.00050 * 9 7 5 13 13 O 1.45202 * 109.46849 * 65.63347 * 3 2 1 14 14 C 1.34232 * 116.99613 * 269.99606 * 13 3 2 15 15 O 1.20830 * 120.00138 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99977 * 180.02562 * 14 13 3 17 17 H 1.09003 * 115.55921 * 325.75221 * 16 14 13 18 18 C 1.53156 * 117.51653 * 111.58029 * 16 14 13 19 19 C 1.52324 * 59.82093 * 107.44064 * 18 16 14 20 20 C 1.53284 * 128.82159 * 117.89613 * 19 18 16 21 21 N 1.47721 * 85.85822 * 116.62139 * 20 19 18 22 22 C 1.34777 * 134.39852 * 204.06452 * 21 20 19 23 23 O 1.21510 * 120.00239 * 180.02562 * 22 21 20 24 24 O 1.34635 * 119.99893 * 0.04557 * 22 21 20 25 25 C 1.45198 * 117.00206 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47285 * 60.00018 * 25 24 22 27 27 C 1.53000 * 109.47319 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47247 * 300.00213 * 25 24 22 29 29 C 1.47721 * 91.21048 * 24.09608 * 21 20 19 30 30 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 299.99877 * 1 2 3 32 32 H 1.08996 * 109.46723 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47176 * 239.99597 * 2 1 3 34 34 H 1.09003 * 109.47253 * 120.00158 * 2 1 3 35 35 H 0.97006 * 119.99301 * 5.24066 * 8 7 5 36 36 H 1.09002 * 117.51587 * 214.87562 * 18 16 14 37 37 H 1.09001 * 117.51365 * 359.97438 * 18 16 14 38 38 H 1.08993 * 113.81757 * 230.85709 * 20 19 18 39 39 H 1.09001 * 113.80918 * 2.39044 * 20 19 18 40 40 H 1.09002 * 109.46498 * 59.99784 * 26 25 24 41 41 H 1.08991 * 109.47370 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.46594 * 300.00163 * 26 25 24 43 43 H 1.08998 * 109.46970 * 59.99953 * 27 25 24 44 44 H 1.09005 * 109.47287 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46996 * 299.99563 * 27 25 24 46 46 H 1.09000 * 109.47350 * 59.99397 * 28 25 24 47 47 H 1.08999 * 109.47636 * 179.97438 * 28 25 24 48 48 H 1.09007 * 109.47063 * 299.99924 * 28 25 24 49 49 H 1.08999 * 113.81224 * 221.67140 * 29 21 20 50 50 H 1.09000 * 113.91889 * 90.15226 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4448 -0.1394 6 1 4.1133 0.5842 0.1734 7 6 4.1823 2.5454 -0.6662 8 7 3.4804 3.5552 -1.1325 9 14 6.0488 2.6025 -0.7178 10 1 6.5265 2.0212 -1.9980 11 1 6.5995 1.8195 0.4174 12 1 6.5038 4.0123 -0.6139 13 8 1.6688 2.0870 1.2471 14 6 0.4859 2.7208 1.2769 15 8 -0.2163 2.7360 0.2937 16 6 0.0336 3.4133 2.5366 17 1 0.3331 2.9354 3.4694 18 6 -0.0398 4.9429 2.5158 19 6 -1.3182 4.1147 2.5076 20 6 -2.4439 4.0747 3.5472 21 7 -3.3103 4.5996 2.4720 22 6 -4.4607 5.3013 2.4459 23 8 -4.9637 5.6040 1.3821 24 8 -5.0523 5.6671 3.5987 25 6 -6.2891 6.4206 3.4947 26 6 -7.3312 5.5893 2.7437 27 6 -6.8085 6.7443 4.8970 28 6 -6.0308 7.7226 2.7339 29 6 -2.4128 4.0476 1.4366 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.5151 3.5599 -1.0370 36 1 0.2117 5.4717 3.4352 37 1 0.2394 5.4479 1.5911 38 1 -2.7071 3.0683 3.8725 39 1 -2.3023 4.7682 4.3761 40 1 -7.5152 4.6617 3.2858 41 1 -8.2595 6.1550 2.6653 42 1 -6.9609 5.3590 1.7447 43 1 -6.0660 7.3368 5.4316 44 1 -7.7373 7.3096 4.8189 45 1 -6.9926 5.8169 5.4393 46 1 -5.6605 7.4924 1.7349 47 1 -6.9593 8.2880 2.6554 48 1 -5.2884 8.3149 3.2689 49 1 -2.2464 4.7196 0.5947 50 1 -2.6651 3.0331 1.1282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492817488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:18 Heat of formation + Delta-G solvation = -131.184060 kcal Electronic energy + Delta-G solvation = -30455.524077 eV Core-core repulsion = 26256.466067 eV Total energy + Delta-G solvation = -4199.058010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16280 -41.47565 -40.37483 -38.02588 -37.46811 -35.79706 -35.29270 -34.90129 -33.90390 -29.34150 -28.87834 -28.39500 -28.30987 -27.48748 -26.06583 -24.91471 -23.15017 -22.37775 -21.48404 -20.54404 -19.79310 -19.27126 -18.89888 -18.62339 -17.74181 -17.55515 -17.22477 -16.80529 -16.34665 -15.99868 -15.70041 -15.40893 -15.21387 -15.15841 -15.00707 -14.88260 -14.34646 -14.25212 -14.14277 -13.49420 -13.35447 -13.20798 -13.15398 -12.95514 -12.92072 -12.88561 -12.74950 -12.66902 -12.59300 -12.55130 -12.40992 -12.00812 -11.93426 -11.87984 -11.76189 -11.44768 -11.42859 -11.28684 -11.19505 -11.00759 -10.71332 -10.49313 -9.95806 -8.83512 -6.64618 0.81310 1.31733 1.52131 1.58133 1.66297 1.80565 1.99794 2.49640 2.54579 2.77040 2.99730 3.24843 3.33927 3.64369 3.73193 3.77746 3.92538 4.02380 4.10928 4.12217 4.17357 4.20401 4.38914 4.41717 4.44368 4.45845 4.58924 4.59976 4.61874 4.70494 4.72293 4.73980 4.77598 4.80902 4.86634 4.86868 4.91993 4.95991 5.00742 5.11524 5.15095 5.25538 5.31243 5.33613 5.43268 5.72626 5.96124 6.11730 6.35702 6.51766 7.11835 7.15689 7.24261 8.51682 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002301 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.930331 B =12168.118817 C =12617.021905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.188 3.812 4 H 0.015 0.985 5 C -0.607 4.607 6 H 0.065 0.935 7 C -0.020 4.020 8 N -0.912 5.912 9 Si 1.125 2.875 10 H -0.269 1.269 11 H -0.263 1.263 12 H -0.281 1.281 13 O -0.367 6.367 14 C 0.466 3.534 15 O -0.545 6.545 16 C -0.142 4.142 17 H 0.168 0.832 18 C -0.102 4.102 19 C -0.143 4.143 20 C 0.165 3.835 21 N -0.636 5.636 22 C 0.670 3.330 23 O -0.599 6.599 24 O -0.361 6.361 25 C 0.122 3.878 26 C -0.180 4.180 27 C -0.132 4.132 28 C -0.180 4.180 29 C 0.178 3.822 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.256 0.744 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.655 4.274 16.478 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.136 3.864 4 H 0.032 0.968 5 C -0.643 4.643 6 H 0.084 0.916 7 C -0.221 4.221 8 N -0.547 5.547 9 Si 0.944 3.056 10 H -0.194 1.194 11 H -0.187 1.187 12 H -0.207 1.207 13 O -0.284 6.284 14 C 0.311 3.689 15 O -0.438 6.438 16 C -0.161 4.161 17 H 0.185 0.815 18 C -0.139 4.139 19 C -0.144 4.144 20 C 0.044 3.956 21 N -0.379 5.379 22 C 0.427 3.573 23 O -0.491 6.491 24 O -0.276 6.276 25 C 0.086 3.914 26 C -0.237 4.237 27 C -0.189 4.189 28 C -0.238 4.238 29 C 0.058 3.942 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.012 5.379 15.361 22.831 hybrid contribution -1.416 -0.940 -0.515 1.776 sum -17.428 4.438 14.846 23.320 Atomic orbital electron populations 1.21734 0.95245 1.01356 1.00782 1.21775 0.95804 0.96199 1.01990 1.20674 0.94774 0.90025 0.80916 0.96755 1.22388 0.91665 1.04649 1.45645 0.91642 1.27729 1.11951 0.91594 0.90815 1.70905 1.08463 1.33736 1.41643 0.82876 0.67886 0.76780 0.78084 1.19387 1.18708 1.20684 1.86865 1.34995 1.62747 1.43810 1.23257 0.79965 0.76183 0.89456 1.90557 1.55692 1.59723 1.37779 1.21896 1.00445 0.97165 0.96630 0.81506 1.23028 0.95400 0.89873 1.05582 1.22546 0.87875 1.04693 0.99280 1.22908 0.80683 1.01554 0.90408 1.48663 1.21198 1.54827 1.13163 1.17574 0.79344 0.77776 0.82576 1.90896 1.65143 1.61011 1.32015 1.86311 1.40270 1.69303 1.31668 1.22489 0.79650 0.90187 0.99082 1.22472 0.99380 1.00709 1.01133 1.21870 1.02249 1.03207 0.91601 1.22480 1.03813 0.96357 1.01104 1.22463 0.82086 0.98469 0.91229 0.90944 0.94006 0.94389 0.91305 0.91670 0.93380 0.82815 0.89907 0.86466 0.86375 0.91780 0.88803 0.92672 0.91027 0.87804 0.90998 0.92690 0.88820 0.91846 0.91796 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.57 71.98 0.62 -4.46 16 2 C -0.12 -5.17 5.62 30.60 0.17 -5.00 16 3 C 0.19 9.78 1.97 29.85 0.06 9.84 16 4 H 0.01 0.86 5.69 -2.39 -0.01 0.85 16 5 C -0.61 -33.71 8.70 25.60 0.22 -33.49 16 6 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 7 C -0.02 -1.09 5.45 84.65 0.46 -0.63 16 8 N -0.91 -55.62 13.63 21.45 0.29 -55.33 16 9 Si 1.12 48.12 29.91 68.60 2.05 50.17 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 11 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 O -0.37 -17.79 9.81 -51.44 -0.50 -18.29 16 14 C 0.47 19.32 6.23 71.24 0.44 19.77 16 15 O -0.55 -24.90 12.28 21.95 0.27 -24.63 16 16 C -0.14 -4.01 6.30 -11.71 -0.07 -4.08 16 17 H 0.17 3.61 8.14 -2.39 -0.02 3.59 16 18 C -0.10 -2.53 10.24 30.42 0.31 -2.22 16 19 C -0.14 -3.49 3.03 -52.39 -0.16 -3.65 16 20 C 0.17 2.99 8.89 86.24 0.77 3.75 16 21 N -0.64 -16.93 3.61 -977.86 -3.53 -20.46 16 22 C 0.67 19.80 8.22 129.79 1.07 20.87 16 23 O -0.60 -21.25 12.61 19.81 0.25 -21.00 16 24 O -0.36 -8.71 9.87 -55.44 -0.55 -9.25 16 25 C 0.12 2.31 1.13 -10.79 -0.01 2.30 16 26 C -0.18 -3.43 8.37 71.98 0.60 -2.82 16 27 C -0.13 -1.48 8.85 71.98 0.64 -0.84 16 28 C -0.18 -3.51 8.37 71.98 0.60 -2.90 16 29 C 0.18 5.34 7.27 86.24 0.63 5.97 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.58 6.04 -2.39 -0.01 1.56 16 32 H 0.04 1.55 7.83 -2.39 -0.02 1.53 16 33 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.26 16.27 6.66 -92.70 -0.62 15.65 16 36 H 0.15 2.55 8.14 -2.39 -0.02 2.54 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.45 5.88 -2.39 -0.01 1.43 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 1.47 5.88 -2.39 -0.01 1.45 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 50 H 0.09 2.85 8.01 -2.39 -0.02 2.83 16 Total: -1.00 -75.53 404.34 5.70 -69.83 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.08 Total: 26.57 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.35 Total: 2.39 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.24 Total: -75.79 kcal Atomic # 8 Polarization: -72.64 SS G_CDS: -0.53 Total: -73.17 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -75.53 5.70 -69.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492817488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.356 kcal (2) G-P(sol) polarization free energy of solvation -75.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds