Wall clock time and date at job start Tue Mar 31 2020 23:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47121 * 239.99746 * 2 1 3 5 5 O 1.45200 * 109.46636 * 119.99783 * 2 1 3 6 6 C 1.34638 * 116.99975 * 60.00058 * 5 2 1 7 7 O 1.21506 * 120.00394 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99912 * 179.97438 * 6 5 2 9 9 C 1.47511 * 125.64950 * 359.69791 * 8 6 5 10 10 C 1.55094 * 104.99704 * 156.27833 * 9 8 6 11 11 C 1.54168 * 101.42999 * 35.91382 * 10 9 8 12 12 C 1.51930 * 121.73384 * 109.30060 * 11 10 9 13 13 C 1.51918 * 121.75316 * 182.04109 * 11 10 9 14 14 H 1.08995 * 117.52768 * 356.30450 * 13 11 10 15 15 C 1.50703 * 117.52767 * 141.43394 * 13 11 10 16 16 O 1.20829 * 119.99556 * 359.97438 * 15 13 11 17 17 O 1.34224 * 120.00353 * 180.02562 * 15 13 11 18 18 C 1.45196 * 117.00426 * 179.97438 * 17 15 13 19 19 C 1.53003 * 109.47315 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47122 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00069 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00197 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00219 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47487 * 89.99813 * 24 22 20 26 26 H 1.48509 * 109.46980 * 209.99726 * 24 22 20 27 27 H 1.48502 * 109.47337 * 329.99400 * 24 22 20 28 28 C 1.47296 * 125.64715 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47427 * 300.00224 * 1 2 3 30 30 H 1.09004 * 109.46817 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46693 * 179.97438 * 3 2 1 33 33 H 1.08990 * 109.46990 * 299.99724 * 3 2 1 34 34 H 1.09009 * 109.46967 * 59.99762 * 3 2 1 35 35 H 1.09002 * 109.47038 * 300.00144 * 4 2 1 36 36 H 1.08995 * 109.46986 * 60.00624 * 4 2 1 37 37 H 1.09003 * 109.46772 * 180.02562 * 4 2 1 38 38 H 1.09003 * 110.33565 * 275.15886 * 9 8 6 39 39 H 1.09005 * 110.33785 * 37.39565 * 9 8 6 40 40 H 1.09003 * 111.03389 * 277.88292 * 10 9 8 41 41 H 1.08994 * 111.03775 * 153.95049 * 10 9 8 42 42 H 1.09000 * 117.52972 * 218.60359 * 12 11 10 43 43 H 1.09000 * 117.52735 * 3.79247 * 12 11 10 44 44 H 1.09001 * 109.47046 * 299.99754 * 18 17 15 45 45 H 1.08999 * 109.46962 * 59.99522 * 18 17 15 46 46 H 1.08998 * 109.46768 * 300.00319 * 19 18 17 47 47 H 1.08999 * 109.46632 * 59.99954 * 19 18 17 48 48 H 0.96999 * 119.99766 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.96532 * 300.96861 * 28 8 6 50 50 H 1.09003 * 109.96968 * 62.23319 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0678 -2.6657 2.4168 9 6 2.9235 -2.1419 3.4982 10 6 2.6159 -3.0405 4.7243 11 6 2.4025 -4.4115 4.0524 12 6 3.4064 -5.5416 4.2060 13 6 2.0219 -5.6443 4.8545 14 1 1.9634 -5.5420 5.9381 15 6 1.0328 -6.5990 4.2370 16 8 0.5737 -6.3694 3.1431 17 8 0.6611 -7.7038 4.9025 18 6 -0.2955 -8.5777 4.2471 19 6 -0.5951 -9.7752 5.1511 20 6 -1.5884 -10.6818 4.4711 21 1 -1.9678 -10.4294 3.4919 22 6 -2.0130 -11.8335 5.0990 23 7 -1.5507 -12.1411 6.2912 24 14 -3.2437 -12.9576 4.2558 25 1 -2.5172 -13.9653 3.4422 26 1 -4.0660 -13.6489 5.2812 27 1 -4.1264 -12.1524 3.3739 28 6 1.7484 -4.0739 2.7073 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2074 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 3.9750 -2.2240 3.2226 39 1 2.6679 -1.1047 3.7149 40 1 1.7111 -2.7099 5.2344 41 1 3.4620 -3.0687 5.4108 42 1 3.6013 -6.1644 3.3330 43 1 4.2592 -5.3720 4.8634 44 1 -1.2169 -8.0281 4.0542 45 1 0.1215 -8.9303 3.3038 46 1 0.3264 -10.3245 5.3436 47 1 -1.0119 -9.4228 6.0946 48 1 -1.8491 -12.9515 6.7328 49 1 0.6684 -4.2042 2.7756 50 1 2.1525 -4.7163 1.9249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495528136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:00 Heat of formation + Delta-G solvation = -144.438313 kcal Electronic energy + Delta-G solvation = -29644.695939 eV Core-core repulsion = 25445.063182 eV Total energy + Delta-G solvation = -4199.632757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14690 -40.47260 -39.05221 -37.15733 -36.13541 -35.24513 -34.13270 -33.34727 -30.57608 -30.25392 -28.03692 -27.71183 -27.64120 -25.73770 -24.12683 -23.92919 -21.95824 -21.11789 -20.51100 -19.66656 -19.36385 -17.98572 -17.44638 -16.88149 -16.63915 -16.25733 -15.95122 -15.78525 -15.51551 -15.21734 -14.59543 -14.55387 -14.48696 -14.01762 -13.63426 -13.40060 -13.19376 -13.06057 -12.80591 -12.72240 -12.44621 -12.36600 -12.28210 -12.17927 -12.11270 -12.09885 -11.64951 -11.52485 -11.45440 -11.27200 -11.05203 -10.81237 -10.75413 -10.64338 -10.60545 -10.35676 -10.20021 -10.10574 -9.65988 -9.59834 -9.30176 -8.90604 -8.44808 -6.10920 -4.15224 1.83060 2.33227 2.69286 2.95753 3.28628 3.34668 3.39070 3.46569 3.63103 4.02212 4.27488 4.35877 4.40182 4.42549 4.46055 4.48358 4.60889 4.87796 5.06065 5.12003 5.15367 5.20453 5.21030 5.23734 5.25716 5.37227 5.38637 5.43704 5.46693 5.51900 5.57697 5.63876 5.66740 5.71412 5.71918 5.89034 5.95385 6.03197 6.08143 6.08635 6.10791 6.26494 6.62602 6.97043 7.28589 7.54954 7.61234 7.85967 8.16047 8.18415 8.25141 8.90289 9.49243 11.00524 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001976 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.925756 B =14164.911956 C =15381.086594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.667 3.333 7 O -0.561 6.561 8 N -0.607 5.607 9 C 0.108 3.892 10 C -0.097 4.097 11 C -0.118 4.118 12 C -0.126 4.126 13 C -0.139 4.139 14 H 0.142 0.858 15 C 0.481 3.519 16 O -0.511 6.511 17 O -0.351 6.351 18 C 0.075 3.925 19 C 0.024 3.976 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.171 3.829 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.093 0.907 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.273 27.747 -6.224 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.422 3.578 7 O -0.450 6.450 8 N -0.349 5.349 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.163 4.163 13 C -0.158 4.158 14 H 0.159 0.841 15 C 0.324 3.676 16 O -0.401 6.401 17 O -0.267 6.267 18 C 0.003 3.997 19 C -0.013 4.013 20 C -0.565 4.565 21 H 0.078 0.922 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.051 3.949 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.073 0.927 49 H 0.111 0.889 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.823 27.580 -6.802 31.167 hybrid contribution -0.809 -0.774 -0.450 1.206 sum 12.015 26.806 -7.253 30.258 Atomic orbital electron populations 1.22524 0.93938 1.05254 1.02423 1.22072 0.94449 0.91437 0.82156 1.21848 1.02158 0.92529 1.03092 1.22518 1.01465 1.03666 0.96442 1.86282 1.71632 1.23519 1.46411 1.17417 0.78885 0.80351 0.81159 1.90937 1.41045 1.70373 1.42620 1.47233 1.53069 1.12996 1.21564 1.22335 0.94824 0.98450 0.85911 1.22331 1.03331 0.91313 0.96454 1.21554 1.02880 0.90576 0.96868 1.23070 0.91148 0.99234 1.02809 1.21699 0.97062 0.96337 1.00737 0.84073 1.22401 0.80403 0.81193 0.83557 1.90652 1.53961 1.74493 1.21001 1.86505 1.58458 1.32310 1.49455 1.23676 0.88492 0.90276 0.97255 1.19174 0.97606 0.89485 0.95005 1.20978 1.25360 1.06432 1.03686 0.92249 1.24982 0.96589 0.97698 0.94903 1.69975 1.43668 1.25394 1.13783 0.86468 0.81030 0.80628 0.79164 1.20477 1.21045 1.19715 1.21249 1.01546 0.78214 0.93896 0.92193 0.91142 0.89267 0.91527 0.90141 0.91513 0.89295 0.91136 0.92235 0.90955 0.89980 0.89462 0.88936 0.87455 0.86582 0.92228 0.92245 0.95329 0.95337 0.92719 0.88927 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 2 C 0.14 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 5 O -0.36 -4.09 9.42 -40.32 -0.38 -4.47 16 6 C 0.67 8.94 7.93 54.06 0.43 9.37 16 7 O -0.56 -9.07 12.21 -19.28 -0.24 -9.31 16 8 N -0.61 -7.13 3.34 -176.50 -0.59 -7.72 16 9 C 0.11 0.84 6.93 -2.38 -0.02 0.82 16 10 C -0.10 -0.66 6.89 -25.01 -0.17 -0.83 16 11 C -0.12 -1.16 2.26 -154.82 -0.35 -1.51 16 12 C -0.13 -1.11 10.02 -27.16 -0.27 -1.39 16 13 C -0.14 -1.59 6.20 -92.20 -0.57 -2.16 16 14 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.48 8.08 7.74 36.01 0.28 8.36 16 16 O -0.51 -9.74 13.62 -18.75 -0.26 -9.99 16 17 O -0.35 -6.92 10.22 -39.24 -0.40 -7.32 16 18 C 0.08 1.68 5.40 37.16 0.20 1.88 16 19 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 20 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 21 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 24 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.17 2.21 5.03 -3.43 -0.02 2.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 45 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.09 1.45 6.90 -51.93 -0.36 1.10 16 50 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -33.57 407.24 -8.75 -42.31 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.53 Total: -1.99 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.20 Total: 1.46 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.15 Total: -33.34 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.27 Total: -31.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.57 -8.75 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495528136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.126 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds