Wall clock time and date at job start Tue Mar 31 2020 23:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47121 * 239.99746 * 2 1 3 5 5 O 1.45200 * 109.46636 * 119.99783 * 2 1 3 6 6 C 1.34638 * 116.99975 * 60.00058 * 5 2 1 7 7 O 1.21506 * 120.00394 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99912 * 179.97438 * 6 5 2 9 9 C 1.47511 * 125.64950 * 359.69791 * 8 6 5 10 10 C 1.55094 * 104.99704 * 156.27833 * 9 8 6 11 11 C 1.54168 * 101.42999 * 35.91382 * 10 9 8 12 12 C 1.51930 * 121.73384 * 109.30060 * 11 10 9 13 13 C 1.51918 * 121.75316 * 182.04109 * 11 10 9 14 14 H 1.08995 * 117.52768 * 356.30450 * 13 11 10 15 15 C 1.50703 * 117.52767 * 141.43394 * 13 11 10 16 16 O 1.20829 * 119.99556 * 359.97438 * 15 13 11 17 17 O 1.34224 * 120.00353 * 180.02562 * 15 13 11 18 18 C 1.45196 * 117.00426 * 179.97438 * 17 15 13 19 19 C 1.53003 * 109.47315 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47122 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00069 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00197 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00219 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47487 * 89.99813 * 24 22 20 26 26 H 1.48509 * 109.46980 * 209.99726 * 24 22 20 27 27 H 1.48502 * 109.47337 * 329.99400 * 24 22 20 28 28 C 1.47296 * 125.64715 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47427 * 300.00224 * 1 2 3 30 30 H 1.09004 * 109.46817 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46693 * 179.97438 * 3 2 1 33 33 H 1.08990 * 109.46990 * 299.99724 * 3 2 1 34 34 H 1.09009 * 109.46967 * 59.99762 * 3 2 1 35 35 H 1.09002 * 109.47038 * 300.00144 * 4 2 1 36 36 H 1.08995 * 109.46986 * 60.00624 * 4 2 1 37 37 H 1.09003 * 109.46772 * 180.02562 * 4 2 1 38 38 H 1.09003 * 110.33565 * 275.15886 * 9 8 6 39 39 H 1.09005 * 110.33785 * 37.39565 * 9 8 6 40 40 H 1.09003 * 111.03389 * 277.88292 * 10 9 8 41 41 H 1.08994 * 111.03775 * 153.95049 * 10 9 8 42 42 H 1.09000 * 117.52972 * 218.60359 * 12 11 10 43 43 H 1.09000 * 117.52735 * 3.79247 * 12 11 10 44 44 H 1.09001 * 109.47046 * 299.99754 * 18 17 15 45 45 H 1.08999 * 109.46962 * 59.99522 * 18 17 15 46 46 H 1.08998 * 109.46768 * 300.00319 * 19 18 17 47 47 H 1.08999 * 109.46632 * 59.99954 * 19 18 17 48 48 H 0.96999 * 119.99766 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.96532 * 300.96861 * 28 8 6 50 50 H 1.09003 * 109.96968 * 62.23319 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0678 -2.6657 2.4168 9 6 2.9235 -2.1419 3.4982 10 6 2.6159 -3.0405 4.7243 11 6 2.4025 -4.4115 4.0524 12 6 3.4064 -5.5416 4.2060 13 6 2.0219 -5.6443 4.8545 14 1 1.9634 -5.5420 5.9381 15 6 1.0328 -6.5990 4.2370 16 8 0.5737 -6.3694 3.1431 17 8 0.6611 -7.7038 4.9025 18 6 -0.2955 -8.5777 4.2471 19 6 -0.5951 -9.7752 5.1511 20 6 -1.5884 -10.6818 4.4711 21 1 -1.9678 -10.4294 3.4919 22 6 -2.0130 -11.8335 5.0990 23 7 -1.5507 -12.1411 6.2912 24 14 -3.2437 -12.9576 4.2558 25 1 -2.5172 -13.9653 3.4422 26 1 -4.0660 -13.6489 5.2812 27 1 -4.1264 -12.1524 3.3739 28 6 1.7484 -4.0739 2.7073 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2074 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 3.9750 -2.2240 3.2226 39 1 2.6679 -1.1047 3.7149 40 1 1.7111 -2.7099 5.2344 41 1 3.4620 -3.0687 5.4108 42 1 3.6013 -6.1644 3.3330 43 1 4.2592 -5.3720 4.8634 44 1 -1.2169 -8.0281 4.0542 45 1 0.1215 -8.9303 3.3038 46 1 0.3264 -10.3245 5.3436 47 1 -1.0119 -9.4228 6.0946 48 1 -1.8491 -12.9515 6.7328 49 1 0.6684 -4.2042 2.7756 50 1 2.1525 -4.7163 1.9249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495528136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:59 Heat of formation + Delta-G solvation = -163.885081 kcal Electronic energy + Delta-G solvation = -29645.539214 eV Core-core repulsion = 25445.063182 eV Total energy + Delta-G solvation = -4200.476033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13880 -41.63379 -40.13534 -38.16751 -37.54257 -36.26621 -35.47024 -34.90665 -32.38902 -31.21667 -29.01383 -28.39866 -28.29388 -27.46171 -25.60260 -24.68067 -22.97134 -22.74444 -21.77506 -20.59305 -20.26553 -19.03540 -18.85237 -18.16769 -17.75163 -17.57478 -17.52258 -17.16949 -16.52969 -16.30199 -16.02635 -15.52624 -15.34298 -14.96235 -14.79649 -14.68542 -14.40183 -14.32120 -14.03871 -13.55594 -13.35528 -13.30452 -13.18275 -13.10635 -12.98117 -12.88804 -12.87212 -12.78161 -12.61889 -12.59780 -12.46250 -12.28438 -12.24647 -11.87566 -11.57632 -11.51574 -11.47922 -11.42820 -11.32148 -11.16358 -10.96869 -10.63247 -9.85537 -8.29198 -6.42356 0.91189 1.07780 1.38859 1.40829 1.51499 1.64904 1.68940 2.37776 2.57555 2.85125 3.04904 3.19543 3.47847 3.61218 3.64227 3.73669 3.77588 3.85789 3.92831 4.18164 4.23047 4.27296 4.35901 4.41242 4.50968 4.58537 4.59226 4.65765 4.67171 4.73798 4.75284 4.80553 4.81539 4.82499 4.87059 4.95025 5.06036 5.08157 5.13949 5.19333 5.25362 5.25468 5.32644 5.42613 5.44188 5.54211 5.72644 6.04373 6.35889 6.69015 6.74009 7.19683 7.27236 8.83242 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001976 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.925756 B =14164.911956 C =15381.086594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.659 3.341 7 O -0.600 6.600 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.082 4.082 11 C -0.113 4.113 12 C -0.101 4.101 13 C -0.151 4.151 14 H 0.171 0.829 15 C 0.474 3.526 16 O -0.541 6.541 17 O -0.360 6.360 18 C 0.091 3.909 19 C 0.032 3.968 20 C -0.552 4.552 21 H 0.062 0.938 22 C 0.007 3.993 23 N -0.924 5.924 24 Si 0.973 3.027 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.266 1.266 28 C 0.173 3.827 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.163 0.837 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.009 0.991 47 H 0.008 0.992 48 H 0.268 0.732 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.984 29.804 -5.640 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.188 4.188 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.414 3.586 7 O -0.491 6.491 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.120 4.120 11 C -0.114 4.114 12 C -0.138 4.138 13 C -0.170 4.170 14 H 0.188 0.812 15 C 0.319 3.681 16 O -0.432 6.432 17 O -0.276 6.276 18 C 0.018 3.982 19 C -0.006 4.006 20 C -0.590 4.590 21 H 0.080 0.920 22 C -0.192 4.192 23 N -0.563 5.563 24 Si 0.796 3.204 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.190 1.190 28 C 0.052 3.948 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.112 0.888 43 H 0.180 0.820 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.568 29.677 -6.199 33.636 hybrid contribution -1.324 -1.340 -0.694 2.007 sum 13.245 28.337 -6.893 32.030 Atomic orbital electron populations 1.22481 0.94424 1.03216 1.03699 1.22461 0.94349 0.93024 0.81451 1.21862 1.02588 0.89944 1.04447 1.22471 1.01764 1.01879 0.97603 1.86296 1.71414 1.22198 1.47361 1.17698 0.78640 0.80991 0.81231 1.90922 1.42731 1.71290 1.44180 1.47349 1.53141 1.12485 1.22019 1.22672 0.95046 0.99270 0.84904 1.22421 1.05124 0.88164 0.96265 1.21589 1.02697 0.92055 0.95012 1.23313 0.90916 0.97161 1.02401 1.21876 0.97359 0.95731 1.02057 0.81163 1.23576 0.80606 0.80607 0.83268 1.90655 1.55178 1.74844 1.22511 1.86495 1.58010 1.33358 1.49749 1.23134 0.89201 0.89707 0.96142 1.18975 0.96245 0.90623 0.94711 1.21359 1.26164 1.07392 1.04104 0.92020 1.25942 0.98482 0.99233 0.95532 1.70086 1.44884 1.26137 1.15176 0.85336 0.78426 0.78395 0.78218 1.19481 1.20149 1.19035 1.21006 0.99475 0.78982 0.95384 0.91792 0.88965 0.92869 0.90821 0.87981 0.90954 0.92799 0.88989 0.91617 0.89046 0.88697 0.89391 0.84769 0.88778 0.81972 0.92639 0.92464 0.97276 0.97369 0.92266 0.92789 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.19 16 3 C -0.13 -1.30 8.85 71.98 0.64 -0.66 16 4 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 5 O -0.36 -7.94 9.42 -55.47 -0.52 -8.47 16 6 C 0.66 18.40 7.93 129.79 1.03 19.43 16 7 O -0.60 -21.09 12.21 19.82 0.24 -20.85 16 8 N -0.61 -14.39 3.34 -942.72 -3.15 -17.53 16 9 C 0.10 1.32 6.93 86.90 0.60 1.92 16 10 C -0.08 -0.82 6.89 31.71 0.22 -0.60 16 11 C -0.11 -2.02 2.26 -52.38 -0.12 -2.14 16 12 C -0.10 -1.50 10.02 30.32 0.30 -1.20 16 13 C -0.15 -3.20 6.20 -11.82 -0.07 -3.27 16 14 H 0.17 2.64 8.14 -2.39 -0.02 2.62 16 15 C 0.47 16.30 7.74 71.24 0.55 16.85 16 16 O -0.54 -21.81 13.62 21.95 0.30 -21.51 16 17 O -0.36 -14.58 10.22 -51.36 -0.52 -15.10 16 18 C 0.09 4.25 5.40 71.98 0.39 4.64 16 19 C 0.03 1.73 5.35 29.85 0.16 1.89 16 20 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 21 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 22 C 0.01 0.42 5.46 84.65 0.46 0.89 16 23 N -0.92 -55.54 13.29 21.45 0.28 -55.25 16 24 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.17 4.68 5.03 86.34 0.43 5.11 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.43 5.88 -2.38 -0.01 1.41 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.05 1.40 5.88 -2.39 -0.01 1.39 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.03 8.05 -2.38 -0.02 1.01 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 45 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.05 1.86 6.90 -2.38 -0.02 1.84 16 50 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -78.91 407.24 5.60 -73.31 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.91 Total: 11.33 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.02 Total: 7.72 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.86 Total: -72.78 kcal Atomic # 8 Polarization: -65.41 SS G_CDS: -0.51 Total: -65.92 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.91 5.60 -73.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495528136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.571 kcal (2) G-P(sol) polarization free energy of solvation -78.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds