Wall clock time and date at job start Tue Mar 31 2020 23:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47502 * 2 1 4 4 C 1.53003 * 109.46797 * 240.00095 * 2 1 3 5 5 O 1.45194 * 109.47225 * 120.00582 * 2 1 3 6 6 C 1.34636 * 117.00158 * 59.99511 * 5 2 1 7 7 O 1.21512 * 120.00136 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00210 * 180.02562 * 6 5 2 9 9 C 1.48664 * 125.77973 * 359.97438 * 8 6 5 10 10 C 1.53062 * 103.43938 * 155.61991 * 9 8 6 11 11 H 1.09000 * 110.56015 * 284.33715 * 10 9 8 12 12 C 1.51626 * 116.67535 * 155.88911 * 10 9 8 13 13 C 1.53809 * 107.02109 * 183.74393 * 12 10 9 14 14 C 1.52525 * 111.70824 * 57.53873 * 13 12 10 15 15 C 1.52940 * 111.74015 * 306.14512 * 14 13 12 16 16 C 1.51444 * 107.50370 * 56.90161 * 15 14 13 17 17 C 1.50695 * 109.87456 * 54.53050 * 16 15 14 18 18 O 1.21207 * 119.99912 * 10.65571 * 17 16 15 19 19 O 1.34312 * 120.00211 * 190.64525 * 17 16 15 20 20 C 1.34917 * 117.00066 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00566 * 359.97438 * 20 19 17 22 22 C 1.38761 * 119.99878 * 180.02562 * 20 19 17 23 23 N 1.31439 * 119.99865 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46886 * 59.99667 * 24 22 20 26 26 H 1.48497 * 109.47264 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46959 * 300.00093 * 24 22 20 28 28 C 1.48236 * 125.78800 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46844 * 299.99739 * 1 2 3 30 30 H 1.08998 * 109.46884 * 59.99382 * 1 2 3 31 31 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47381 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47555 * 300.00206 * 3 2 1 34 34 H 1.08998 * 109.46858 * 60.00270 * 3 2 1 35 35 H 1.08997 * 109.47404 * 300.00037 * 4 2 1 36 36 H 1.09007 * 109.47096 * 60.00666 * 4 2 1 37 37 H 1.09002 * 109.46951 * 180.02562 * 4 2 1 38 38 H 1.08997 * 110.62664 * 37.13996 * 9 8 6 39 39 H 1.08994 * 110.76289 * 274.17566 * 9 8 6 40 40 H 1.08997 * 109.94119 * 303.12216 * 12 10 9 41 41 H 1.09000 * 109.94237 * 64.36463 * 12 10 9 42 42 H 1.08999 * 109.03855 * 178.11423 * 13 12 10 43 43 H 1.09006 * 109.03455 * 297.03777 * 13 12 10 44 44 H 1.08999 * 109.04099 * 66.51216 * 14 13 12 45 45 H 1.08997 * 109.04943 * 185.46894 * 14 13 12 46 46 H 1.08991 * 109.42894 * 297.53284 * 15 14 13 47 47 H 1.09001 * 109.99878 * 176.58833 * 15 14 13 48 48 H 0.96995 * 119.99876 * 180.02562 * 23 22 20 49 49 H 1.09003 * 110.17245 * 57.70868 * 28 8 6 50 50 H 1.09011 * 110.17104 * 295.91632 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0672 -2.6656 2.4169 9 6 2.9239 -2.1389 3.5118 10 6 2.5787 -3.0411 4.6991 11 1 1.6083 -2.7711 5.1156 12 6 3.6279 -3.1666 5.7864 13 6 3.0973 -4.1860 6.8086 14 6 2.7975 -5.5329 6.1587 15 6 1.8583 -5.3871 4.9605 16 6 2.5065 -4.4237 3.9883 17 6 3.8954 -4.8979 3.6463 18 8 4.2567 -6.0058 3.9795 19 8 4.7329 -4.0929 2.9720 20 6 5.9612 -4.5788 2.6975 21 1 6.2324 -5.5738 3.0179 22 6 6.8766 -3.7996 2.0044 23 7 6.5467 -2.5883 1.6148 24 14 8.5775 -4.4720 1.6249 25 1 8.4515 -5.6989 0.7977 26 1 9.3584 -3.4517 0.8804 27 1 9.2745 -4.8004 2.8943 28 6 1.7467 -4.0824 2.7128 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 2.6715 -1.1016 3.7317 39 1 3.9792 -2.2298 3.2545 40 1 4.5655 -3.5221 5.3590 41 1 3.7806 -2.2012 6.2689 42 1 3.8436 -4.3269 7.5905 43 1 2.1828 -3.7972 7.2566 44 1 3.7321 -5.9807 5.8211 45 1 2.3351 -6.1888 6.8963 46 1 0.9012 -4.9884 5.2964 47 1 1.7114 -6.3554 4.4820 48 1 7.1864 -2.0438 1.1300 49 1 2.0790 -4.7217 1.8949 50 1 0.6746 -4.2001 2.8710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495624354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:56 Heat of formation + Delta-G solvation = -156.254956 kcal Electronic energy + Delta-G solvation = -32903.639937 eV Core-core repulsion = 28703.494771 eV Total energy + Delta-G solvation = -4200.145166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12608 -40.06429 -37.89896 -36.74782 -35.54519 -34.64530 -33.70037 -32.14896 -31.37393 -30.48282 -27.32270 -27.20924 -27.16291 -25.60114 -24.87371 -22.75916 -21.52047 -21.02093 -20.49374 -19.06234 -18.77316 -17.76862 -17.41327 -16.36832 -16.02270 -15.95367 -15.25029 -15.07451 -14.75891 -14.52598 -14.28235 -14.11066 -13.95738 -13.61159 -13.37901 -13.07471 -12.72115 -12.48511 -12.39251 -12.35454 -12.02763 -11.93869 -11.82766 -11.79326 -11.70771 -11.57405 -11.49410 -11.23345 -11.18693 -11.13461 -11.00716 -10.76853 -10.49369 -10.44053 -10.10400 -10.06932 -9.95443 -9.79522 -9.64560 -9.57295 -8.84491 -8.56429 -8.19997 -6.41712 -4.08812 2.44428 3.09639 3.18090 3.21062 3.32375 3.42370 3.88480 4.20054 4.41724 4.53555 4.86261 4.90218 4.93984 5.03630 5.08260 5.14501 5.26302 5.41587 5.51519 5.56655 5.59158 5.63741 5.67843 5.72341 5.76372 5.78678 5.80552 5.89167 5.95282 6.01394 6.03542 6.04992 6.11907 6.12722 6.18170 6.35945 6.40232 6.43547 6.50277 6.52349 6.57912 6.61368 6.65424 6.82376 6.86787 7.10480 7.40307 7.92533 7.94992 8.69913 8.77528 9.07552 9.84165 10.74969 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.008953 B = 0.005477 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.845022 B = 5110.961315 C = 7246.422082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.355 6.355 6 C 0.675 3.325 7 O -0.582 6.582 8 N -0.593 5.593 9 C 0.103 3.897 10 C -0.091 4.091 11 H 0.087 0.913 12 C -0.112 4.112 13 C -0.113 4.113 14 C -0.139 4.139 15 C -0.079 4.079 16 C -0.066 4.066 17 C 0.411 3.589 18 O -0.546 6.546 19 O -0.201 6.201 20 C -0.385 4.385 21 H 0.093 0.907 22 C 0.046 3.954 23 N -0.858 5.858 24 Si 0.938 3.062 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.270 1.270 28 C 0.154 3.846 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.269 0.731 49 H 0.076 0.924 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 5.941 3.453 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.269 6.269 6 C 0.431 3.569 7 O -0.473 6.473 8 N -0.333 5.333 9 C -0.019 4.019 10 C -0.110 4.110 11 H 0.105 0.895 12 C -0.150 4.150 13 C -0.150 4.150 14 C -0.176 4.176 15 C -0.117 4.117 16 C -0.068 4.068 17 C 0.258 3.742 18 O -0.444 6.444 19 O -0.108 6.108 20 C -0.461 4.461 21 H 0.111 0.889 22 C -0.158 4.158 23 N -0.494 5.494 24 Si 0.763 3.237 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.196 1.196 28 C 0.032 3.968 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.110 5.819 3.024 12.050 hybrid contribution 0.841 -0.288 -0.367 0.961 sum -9.269 5.531 2.657 11.116 Atomic orbital electron populations 1.22510 0.94508 1.04894 1.01919 1.21970 0.93830 0.91529 0.82737 1.21830 1.02661 0.92659 1.02498 1.22499 1.02169 1.03333 0.95998 1.86338 1.71369 1.23592 1.45646 1.17304 0.78495 0.80315 0.80802 1.90841 1.42781 1.70688 1.42955 1.47475 1.52574 1.11756 1.21513 1.22516 0.98410 0.96625 0.84327 1.22113 1.00401 0.93228 0.95257 0.89509 1.21438 0.98744 0.99312 0.95531 1.21507 1.00318 0.95407 0.97792 1.21734 1.02490 0.97119 0.96258 1.20893 0.97683 0.98448 0.94642 1.21081 0.92504 0.97825 0.95354 1.22581 0.87315 0.84585 0.79768 1.90472 1.77407 1.22211 1.54304 1.83929 1.23620 1.42293 1.60942 1.21146 0.86261 1.01785 1.36956 0.88947 1.25245 0.99420 0.95310 0.95852 1.69958 1.35711 1.08180 1.35600 0.85827 0.80504 0.78462 0.78901 1.19646 1.20471 1.19562 1.21376 0.98810 0.80535 0.96049 0.92488 0.91555 0.89409 0.91196 0.90557 0.91746 0.89422 0.91723 0.91749 0.90877 0.86312 0.89992 0.91341 0.92139 0.92764 0.88320 0.92500 0.91358 0.90882 0.92103 0.90573 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.14 2.04 1.13 -90.62 -0.10 1.93 16 3 C -0.14 -1.65 8.85 37.15 0.33 -1.32 16 4 C -0.18 -2.81 8.37 37.16 0.31 -2.50 16 5 O -0.36 -6.55 9.46 -40.31 -0.38 -6.93 16 6 C 0.68 13.44 7.94 54.06 0.43 13.87 16 7 O -0.58 -12.10 12.22 -19.28 -0.24 -12.33 16 8 N -0.59 -11.41 3.38 -176.64 -0.60 -12.00 16 9 C 0.10 1.88 5.98 -2.81 -0.02 1.87 16 10 C -0.09 -1.44 2.33 -89.89 -0.21 -1.65 16 11 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 12 C -0.11 -1.77 5.53 -27.01 -0.15 -1.92 16 13 C -0.11 -1.54 5.84 -26.55 -0.16 -1.69 16 14 C -0.14 -2.09 5.49 -27.00 -0.15 -2.24 16 15 C -0.08 -1.17 4.91 -27.55 -0.14 -1.31 16 16 C -0.07 -1.16 0.76 -155.40 -0.12 -1.28 16 17 C 0.41 9.42 4.19 36.00 0.15 9.57 16 18 O -0.55 -13.58 12.97 -19.05 -0.25 -13.83 16 19 O -0.20 -5.27 6.37 -20.70 -0.13 -5.40 16 20 C -0.39 -10.81 9.65 30.93 0.30 -10.52 16 21 H 0.09 2.65 6.86 -52.49 -0.36 2.29 16 22 C 0.05 1.26 5.49 -17.53 -0.10 1.16 16 23 N -0.86 -23.97 13.67 55.48 0.76 -23.21 16 24 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 C 0.15 2.77 6.04 -3.43 -0.02 2.75 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.37 5.88 -51.93 -0.31 1.06 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.57 5.88 -51.93 -0.31 1.27 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.12 2.70 5.84 -51.93 -0.30 2.40 16 40 H 0.08 1.62 6.20 -51.93 -0.32 1.29 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.86 5.32 -51.93 -0.28 1.58 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 47 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 50 H 0.08 1.17 8.09 -51.92 -0.42 0.75 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -31.47 381.94 -7.59 -39.06 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.16 Total: 8.31 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.68 Total: 4.65 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.16 Total: -35.21 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.00 Total: -38.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.47 -7.59 -39.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495624354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.198 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds