Wall clock time and date at job start Tue Mar 31 2020 23:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47502 * 2 1 4 4 C 1.53003 * 109.46797 * 240.00095 * 2 1 3 5 5 O 1.45194 * 109.47225 * 120.00582 * 2 1 3 6 6 C 1.34636 * 117.00158 * 59.99511 * 5 2 1 7 7 O 1.21512 * 120.00136 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00210 * 180.02562 * 6 5 2 9 9 C 1.48664 * 125.77973 * 359.97438 * 8 6 5 10 10 C 1.53062 * 103.43938 * 155.61991 * 9 8 6 11 11 H 1.09000 * 110.56015 * 284.33715 * 10 9 8 12 12 C 1.51626 * 116.67535 * 155.88911 * 10 9 8 13 13 C 1.53809 * 107.02109 * 183.74393 * 12 10 9 14 14 C 1.52525 * 111.70824 * 57.53873 * 13 12 10 15 15 C 1.52940 * 111.74015 * 306.14512 * 14 13 12 16 16 C 1.51444 * 107.50370 * 56.90161 * 15 14 13 17 17 C 1.50695 * 109.87456 * 54.53050 * 16 15 14 18 18 O 1.21207 * 119.99912 * 10.65571 * 17 16 15 19 19 O 1.34312 * 120.00211 * 190.64525 * 17 16 15 20 20 C 1.34917 * 117.00066 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00566 * 359.97438 * 20 19 17 22 22 C 1.38761 * 119.99878 * 180.02562 * 20 19 17 23 23 N 1.31439 * 119.99865 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46886 * 59.99667 * 24 22 20 26 26 H 1.48497 * 109.47264 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46959 * 300.00093 * 24 22 20 28 28 C 1.48236 * 125.78800 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46844 * 299.99739 * 1 2 3 30 30 H 1.08998 * 109.46884 * 59.99382 * 1 2 3 31 31 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47381 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47555 * 300.00206 * 3 2 1 34 34 H 1.08998 * 109.46858 * 60.00270 * 3 2 1 35 35 H 1.08997 * 109.47404 * 300.00037 * 4 2 1 36 36 H 1.09007 * 109.47096 * 60.00666 * 4 2 1 37 37 H 1.09002 * 109.46951 * 180.02562 * 4 2 1 38 38 H 1.08997 * 110.62664 * 37.13996 * 9 8 6 39 39 H 1.08994 * 110.76289 * 274.17566 * 9 8 6 40 40 H 1.08997 * 109.94119 * 303.12216 * 12 10 9 41 41 H 1.09000 * 109.94237 * 64.36463 * 12 10 9 42 42 H 1.08999 * 109.03855 * 178.11423 * 13 12 10 43 43 H 1.09006 * 109.03455 * 297.03777 * 13 12 10 44 44 H 1.08999 * 109.04099 * 66.51216 * 14 13 12 45 45 H 1.08997 * 109.04943 * 185.46894 * 14 13 12 46 46 H 1.08991 * 109.42894 * 297.53284 * 15 14 13 47 47 H 1.09001 * 109.99878 * 176.58833 * 15 14 13 48 48 H 0.96995 * 119.99876 * 180.02562 * 23 22 20 49 49 H 1.09003 * 110.17245 * 57.70868 * 28 8 6 50 50 H 1.09011 * 110.17104 * 295.91632 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0672 -2.6656 2.4169 9 6 2.9239 -2.1389 3.5118 10 6 2.5787 -3.0411 4.6991 11 1 1.6083 -2.7711 5.1156 12 6 3.6279 -3.1666 5.7864 13 6 3.0973 -4.1860 6.8086 14 6 2.7975 -5.5329 6.1587 15 6 1.8583 -5.3871 4.9605 16 6 2.5065 -4.4237 3.9883 17 6 3.8954 -4.8979 3.6463 18 8 4.2567 -6.0058 3.9795 19 8 4.7329 -4.0929 2.9720 20 6 5.9612 -4.5788 2.6975 21 1 6.2324 -5.5738 3.0179 22 6 6.8766 -3.7996 2.0044 23 7 6.5467 -2.5883 1.6148 24 14 8.5775 -4.4720 1.6249 25 1 8.4515 -5.6989 0.7977 26 1 9.3584 -3.4517 0.8804 27 1 9.2745 -4.8004 2.8943 28 6 1.7467 -4.0824 2.7128 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 2.6715 -1.1016 3.7317 39 1 3.9792 -2.2298 3.2545 40 1 4.5655 -3.5221 5.3590 41 1 3.7806 -2.2012 6.2689 42 1 3.8436 -4.3269 7.5905 43 1 2.1828 -3.7972 7.2566 44 1 3.7321 -5.9807 5.8211 45 1 2.3351 -6.1888 6.8963 46 1 0.9012 -4.9884 5.2964 47 1 1.7114 -6.3554 4.4820 48 1 7.1864 -2.0438 1.1300 49 1 2.0790 -4.7217 1.8949 50 1 0.6746 -4.2001 2.8710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495624354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:55 Heat of formation + Delta-G solvation = -174.837688 kcal Electronic energy + Delta-G solvation = -32904.445744 eV Core-core repulsion = 28703.494771 eV Total energy + Delta-G solvation = -4200.950973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.65000 -41.51420 -39.62776 -38.16242 -37.28998 -36.20572 -34.95111 -34.23179 -32.72365 -31.84272 -28.62120 -28.34713 -28.25254 -27.64174 -26.25472 -24.41965 -22.88738 -22.31192 -21.79328 -20.44188 -20.42175 -19.81828 -18.88500 -17.86879 -17.71518 -17.39886 -16.89275 -16.49754 -16.35081 -16.09222 -15.81034 -15.42025 -15.26052 -14.99778 -14.77675 -14.59837 -14.20637 -13.93619 -13.73471 -13.64321 -13.35393 -13.28107 -13.19035 -13.06027 -13.00562 -12.84797 -12.82322 -12.80777 -12.56155 -12.46599 -12.44638 -12.23653 -12.21446 -12.00656 -11.70415 -11.41905 -11.35004 -11.31224 -11.06253 -10.88597 -10.67353 -10.55338 -9.73165 -8.49368 -6.26477 1.05819 1.29471 1.30753 1.44405 1.63908 1.80531 2.09090 2.69249 2.84036 2.98406 3.21550 3.49989 3.70349 3.78811 3.83243 3.96773 3.97904 4.18132 4.25055 4.30123 4.40862 4.43204 4.49380 4.54512 4.57423 4.63149 4.63279 4.72659 4.76367 4.77798 4.84800 4.85709 4.89211 4.92625 5.01146 5.05505 5.14433 5.15973 5.23957 5.27595 5.30303 5.31056 5.37355 5.42130 5.47836 5.50150 5.69349 5.88915 6.42843 6.75592 6.96596 7.27995 7.85255 8.68838 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.008953 B = 0.005477 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.845022 B = 5110.961315 C = 7246.422082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.668 3.332 7 O -0.597 6.597 8 N -0.599 5.599 9 C 0.104 3.896 10 C -0.075 4.075 11 H 0.134 0.866 12 C -0.113 4.113 13 C -0.106 4.106 14 C -0.139 4.139 15 C -0.076 4.076 16 C -0.060 4.060 17 C 0.409 3.591 18 O -0.572 6.572 19 O -0.221 6.221 20 C -0.418 4.418 21 H 0.074 0.926 22 C 0.003 3.997 23 N -0.890 5.890 24 Si 1.003 2.997 25 H -0.269 1.269 26 H -0.263 1.263 27 H -0.261 1.261 28 C 0.153 3.847 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.274 0.726 49 H 0.041 0.959 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 7.533 4.816 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.084 3.916 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.282 6.282 6 C 0.424 3.576 7 O -0.490 6.490 8 N -0.339 5.339 9 C -0.017 4.017 10 C -0.094 4.094 11 H 0.152 0.848 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.176 4.176 15 C -0.114 4.114 16 C -0.062 4.062 17 C 0.257 3.743 18 O -0.469 6.469 19 O -0.129 6.129 20 C -0.494 4.494 21 H 0.092 0.908 22 C -0.198 4.198 23 N -0.527 5.527 24 Si 0.823 3.177 25 H -0.194 1.194 26 H -0.187 1.187 27 H -0.186 1.186 28 C 0.032 3.968 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.322 7.412 4.398 15.037 hybrid contribution 1.491 -0.808 -0.815 1.882 sum -10.831 6.604 3.584 13.182 Atomic orbital electron populations 1.22421 0.92815 1.03734 1.03938 1.22478 0.95345 0.92613 0.81156 1.21864 1.01807 0.90642 1.04680 1.22460 1.00728 1.02188 0.98241 1.86346 1.71633 1.22890 1.47314 1.17528 0.78500 0.80886 0.80733 1.90828 1.43573 1.71204 1.43356 1.47654 1.52412 1.12114 1.21700 1.22399 0.95587 0.98559 0.85198 1.22202 1.02451 0.90636 0.94086 0.84777 1.21439 0.96437 1.01114 0.96118 1.21495 1.02182 0.93808 0.96894 1.21697 1.00451 0.98401 0.97096 1.21033 0.99327 0.97532 0.93468 1.21247 0.88772 1.00037 0.96130 1.23846 0.88853 0.83923 0.77642 1.90456 1.78437 1.23359 1.54696 1.84008 1.23449 1.43144 1.62249 1.21235 0.87987 1.01593 1.38595 0.90844 1.26253 1.03090 0.95460 0.95023 1.70063 1.37186 1.09267 1.36190 0.84885 0.75581 0.78103 0.79091 1.19445 1.18681 1.18581 1.21454 1.00803 0.79647 0.94927 0.91335 0.88617 0.92064 0.92579 0.87292 0.90598 0.92510 0.88248 0.93860 0.88799 0.91402 0.95343 0.89011 0.91780 0.88635 0.93182 0.89598 0.86517 0.91710 0.91700 0.94069 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.37 71.98 0.60 -3.62 16 2 C 0.12 3.49 1.13 -10.79 -0.01 3.47 16 3 C -0.13 -2.87 8.85 71.98 0.64 -2.23 16 4 C -0.18 -5.55 8.37 71.98 0.60 -4.95 16 5 O -0.37 -13.66 9.46 -55.46 -0.52 -14.19 16 6 C 0.67 27.06 7.94 129.79 1.03 28.09 16 7 O -0.60 -25.47 12.22 19.80 0.24 -25.22 16 8 N -0.60 -23.25 3.38 -943.18 -3.19 -26.44 16 9 C 0.10 3.84 5.98 85.98 0.51 4.35 16 10 C -0.08 -2.23 2.33 -10.32 -0.02 -2.25 16 11 H 0.13 2.86 8.04 -2.39 -0.02 2.84 16 12 C -0.11 -3.43 5.53 30.42 0.17 -3.26 16 13 C -0.11 -2.58 5.84 30.71 0.18 -2.40 16 14 C -0.14 -3.92 5.49 30.42 0.17 -3.75 16 15 C -0.08 -2.07 4.91 30.06 0.15 -1.92 16 16 C -0.06 -2.10 0.76 -52.76 -0.04 -2.14 16 17 C 0.41 19.83 4.19 71.23 0.30 20.12 16 18 O -0.57 -30.24 12.97 20.78 0.27 -29.97 16 19 O -0.22 -12.43 6.37 14.88 0.09 -12.34 16 20 C -0.42 -25.11 9.65 67.95 0.66 -24.45 16 21 H 0.07 4.54 6.86 -2.91 -0.02 4.52 16 22 C 0.00 0.17 5.49 84.88 0.47 0.63 16 23 N -0.89 -52.16 13.67 21.63 0.30 -51.87 16 24 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 28 C 0.15 5.51 6.04 85.82 0.52 6.02 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.86 5.88 -2.39 -0.01 1.85 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.11 5.88 -2.39 -0.01 2.10 16 36 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 3.01 8.08 -2.39 -0.02 2.99 16 39 H 0.07 3.28 5.84 -2.39 -0.01 3.26 16 40 H 0.03 1.16 6.20 -2.39 -0.01 1.15 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.05 1.92 5.32 -2.39 -0.01 1.91 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.12 2.14 8.05 -2.39 -0.02 2.12 16 47 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 48 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.04 1.75 7.89 -2.39 -0.02 1.73 16 50 H 0.11 3.25 8.09 -2.38 -0.02 3.23 16 Total: -1.00 -77.16 381.94 6.06 -71.10 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.93 Total: 30.83 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.91 Total: 11.71 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.89 Total: -78.31 kcal Atomic # 8 Polarization: -81.80 SS G_CDS: 0.08 Total: -81.72 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -77.16 6.06 -71.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495624354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.737 kcal (2) G-P(sol) polarization free energy of solvation -77.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds