Wall clock time and date at job start Tue Mar 31 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 C 1.52995 * 109.47058 * 120.00216 * 2 1 3 5 5 O 1.45210 * 109.47225 * 240.00074 * 2 1 3 6 6 C 1.34637 * 116.99497 * 59.99832 * 5 2 1 7 7 O 1.21505 * 120.00392 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99238 * 179.97438 * 6 5 2 9 9 C 1.47062 * 136.06019 * 359.63209 * 8 6 5 10 10 C 1.53760 * 87.88975 * 152.96054 * 9 8 6 11 11 C 1.53003 * 114.57507 * 272.66730 * 10 9 8 12 12 C 1.50699 * 114.08827 * 139.77831 * 10 9 8 13 13 O 1.20829 * 119.99959 * 260.80621 * 12 10 9 14 14 O 1.34221 * 119.99689 * 80.80936 * 12 10 9 15 15 C 1.45205 * 117.00079 * 185.12724 * 14 12 10 16 16 C 1.52997 * 109.47541 * 175.12807 * 15 14 12 17 17 C 1.50703 * 115.54886 * 39.55655 * 16 15 14 18 18 H 1.07996 * 120.00206 * 268.43704 * 17 16 15 19 19 C 1.37878 * 119.99914 * 88.43814 * 17 16 15 20 20 N 1.31508 * 120.00005 * 179.62679 * 19 17 16 21 21 Si 1.86800 * 119.99846 * 359.62104 * 19 17 16 22 22 H 1.48504 * 109.47080 * 91.77758 * 21 19 17 23 23 H 1.48501 * 109.47014 * 211.77700 * 21 19 17 24 24 H 1.48503 * 109.47430 * 331.77834 * 21 19 17 25 25 C 1.52994 * 117.49879 * 253.85133 * 16 15 14 26 26 C 1.52998 * 117.49751 * 185.22838 * 16 15 14 27 27 C 1.47067 * 136.05346 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46992 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47118 * 300.00014 * 1 2 3 31 31 H 1.09000 * 109.47076 * 59.99960 * 3 2 1 32 32 H 1.08999 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47287 * 300.00163 * 3 2 1 34 34 H 1.09001 * 109.47604 * 59.99760 * 4 2 1 35 35 H 1.09010 * 109.47482 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47146 * 299.99368 * 4 2 1 37 37 H 1.08995 * 113.46900 * 267.69297 * 9 8 6 38 38 H 1.09004 * 113.46736 * 38.13871 * 9 8 6 39 39 H 1.08997 * 109.46877 * 158.88520 * 11 10 9 40 40 H 1.08999 * 109.46724 * 278.88343 * 11 10 9 41 41 H 1.09002 * 109.47118 * 38.88432 * 11 10 9 42 42 H 1.09008 * 109.46637 * 295.13068 * 15 14 12 43 43 H 1.09002 * 109.46811 * 55.12107 * 15 14 12 44 44 H 0.97003 * 119.99921 * 179.97438 * 20 19 17 45 45 H 1.09006 * 117.50151 * 359.97438 * 25 16 15 46 46 H 1.09000 * 117.50130 * 145.01817 * 25 16 15 47 47 H 1.09007 * 117.49442 * 214.97346 * 26 16 15 48 48 H 1.08993 * 117.50180 * 359.97438 * 26 16 15 49 49 H 1.09000 * 113.47257 * 321.87213 * 27 8 6 50 50 H 1.09001 * 113.46397 * 92.30592 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0141 -0.6845 -1.1856 6 6 1.6522 -0.1728 -2.3773 7 8 0.9516 0.8187 -2.4252 8 7 2.0681 -0.7600 -3.5169 9 6 2.8986 -1.9219 -3.8676 10 6 2.1052 -2.0210 -5.1809 11 6 0.8242 -2.8527 -5.0893 12 6 2.9478 -2.3555 -6.3848 13 8 3.3056 -1.4780 -7.1344 14 8 3.3007 -3.6281 -6.6242 15 6 4.2062 -3.8634 -7.7347 16 6 4.5875 -5.3444 -7.7770 17 6 3.4727 -6.3116 -7.4722 18 1 3.3105 -6.6467 -6.4585 19 6 2.6597 -6.7686 -8.4877 20 7 1.6915 -7.6183 -8.2229 21 14 2.9335 -6.1809 -10.2396 22 1 3.8496 -7.1177 -10.9385 23 1 1.6330 -6.1342 -10.9550 24 1 3.5356 -4.8235 -10.2180 25 6 5.9974 -5.7243 -7.3202 26 6 5.6349 -5.7751 -8.8058 27 6 1.8960 -0.5171 -4.9571 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 -1.7489 1.2492 35 1 3.1301 -0.7209 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 3.9503 -1.6757 -4.0133 38 1 2.7528 -2.7754 -3.2053 39 1 0.1526 -2.5760 -5.9020 40 1 1.0721 -3.9112 -5.1671 41 1 0.3355 -2.6631 -4.1336 42 1 3.7156 -3.5876 -8.6682 43 1 5.1049 -3.2603 -7.6047 44 1 1.1193 -7.9395 -8.9373 45 1 6.6536 -4.9189 -6.9899 46 1 6.1189 -6.6738 -6.7990 47 1 5.5179 -6.7583 -9.2618 48 1 6.0520 -5.0034 -9.4527 49 1 0.8963 -0.1737 -5.2231 50 1 2.6832 0.0999 -5.3903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495899379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:01 Heat of formation + Delta-G solvation = -94.651686 kcal Electronic energy + Delta-G solvation = -30572.390686 eV Core-core repulsion = 26374.916839 eV Total energy + Delta-G solvation = -4197.473847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43369 -40.42193 -39.02847 -37.15826 -36.67760 -35.52066 -34.26793 -32.12410 -31.71919 -27.67615 -27.62123 -27.52358 -27.34204 -26.35853 -25.41893 -23.67074 -21.85262 -21.70859 -19.75047 -19.26033 -18.87411 -18.07649 -17.31893 -16.90466 -16.83643 -16.16833 -16.00560 -15.69533 -15.31716 -14.88121 -14.57555 -14.38475 -14.13010 -13.73456 -13.64885 -13.38729 -13.21213 -12.77616 -12.74303 -12.54636 -12.50082 -12.43775 -12.16848 -12.14167 -11.97766 -11.91317 -11.86710 -11.61039 -11.47854 -11.20065 -10.98467 -10.75487 -10.58433 -10.57928 -10.35741 -10.23509 -10.09871 -9.97439 -9.63909 -9.14290 -9.03071 -8.61576 -8.57644 -6.13809 -4.16008 1.71353 2.40485 2.64849 3.07256 3.24433 3.35201 3.36453 3.52591 3.94703 4.37527 4.43895 4.46883 4.50639 4.64324 4.70423 4.81533 4.92010 5.07619 5.12413 5.20766 5.25103 5.27822 5.28219 5.41981 5.42953 5.49695 5.58639 5.60137 5.60930 5.67233 5.74087 5.79742 5.83883 5.86033 5.94345 6.03407 6.03634 6.07445 6.24365 6.28187 6.33981 6.36020 6.58518 6.74376 6.99979 7.06010 7.45709 7.65047 8.13217 8.15136 8.47210 8.90729 9.48513 10.98013 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.002493 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.456421 B =11228.326354 C =11269.192266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.141 4.141 5 O -0.359 6.359 6 C 0.686 3.314 7 O -0.566 6.566 8 N -0.633 5.633 9 C 0.125 3.875 10 C -0.094 4.094 11 C -0.125 4.125 12 C 0.475 3.525 13 O -0.519 6.519 14 O -0.309 6.309 15 C 0.104 3.896 16 C -0.005 4.005 17 C -0.474 4.474 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.261 1.261 25 C -0.177 4.177 26 C -0.193 4.193 27 C 0.151 3.849 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.265 0.735 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 13.798 14.319 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.241 4.241 4 C -0.198 4.198 5 O -0.274 6.274 6 C 0.443 3.557 7 O -0.456 6.456 8 N -0.375 5.375 9 C 0.002 3.998 10 C -0.096 4.096 11 C -0.182 4.182 12 C 0.317 3.683 13 O -0.409 6.409 14 O -0.222 6.222 15 C 0.031 3.969 16 C -0.006 4.006 17 C -0.511 4.511 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.533 5.533 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.186 1.186 25 C -0.214 4.214 26 C -0.230 4.230 27 C 0.030 3.970 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.596 14.325 14.287 20.240 hybrid contribution 0.208 0.373 -1.186 1.261 sum 0.805 14.698 13.101 19.705 Atomic orbital electron populations 1.22526 0.93916 1.03106 1.04563 1.22101 0.94472 0.92184 0.81386 1.22518 1.01579 0.95405 1.04566 1.21859 1.02302 1.01259 0.94352 1.86333 1.71301 1.56405 1.13333 1.17114 0.78571 0.80236 0.79771 1.90903 1.41833 1.26406 1.86424 1.47920 1.53296 1.32305 1.04000 1.23081 0.95400 0.88849 0.92513 1.22081 0.97896 0.97471 0.92161 1.21551 0.92873 1.01014 1.02737 1.22812 0.78296 0.81996 0.85215 1.90632 1.53697 1.49175 1.47420 1.86643 1.59403 1.26008 1.50164 1.22954 0.89983 0.97486 0.86506 1.19329 0.90250 0.91128 0.99916 1.20121 1.11196 1.23388 0.96434 0.89996 1.24953 0.94570 0.94224 0.98690 1.69873 1.18804 1.31532 1.33063 0.86954 0.77197 0.80243 0.85301 1.20372 1.21979 1.18578 1.22939 0.99783 1.02232 0.96448 1.22994 1.05592 1.02182 0.92260 1.22987 1.04383 0.94109 0.75568 0.89399 0.91992 0.91144 0.91108 0.92171 0.89440 0.91293 0.91440 0.90133 0.88820 0.88191 0.91147 0.89017 0.91337 0.91645 0.93151 0.92551 0.90834 0.89076 0.88813 0.90716 0.88856 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.23 16 3 C -0.18 -1.73 8.37 37.15 0.31 -1.42 16 4 C -0.14 -1.02 8.85 37.15 0.33 -0.69 16 5 O -0.36 -4.47 9.91 -40.32 -0.40 -4.87 16 6 C 0.69 9.46 8.26 54.06 0.45 9.90 16 7 O -0.57 -8.72 12.66 -19.28 -0.24 -8.96 16 8 N -0.63 -8.05 3.47 -190.88 -0.66 -8.71 16 9 C 0.12 1.46 7.80 -8.37 -0.07 1.39 16 10 C -0.09 -1.25 1.47 -155.02 -0.23 -1.47 16 11 C -0.12 -1.61 9.16 37.16 0.34 -1.27 16 12 C 0.47 8.03 7.03 36.01 0.25 8.28 16 13 O -0.52 -9.60 15.74 -18.75 -0.30 -9.90 16 14 O -0.31 -6.10 9.43 -39.23 -0.37 -6.47 16 15 C 0.10 2.14 5.40 37.16 0.20 2.34 16 16 C -0.01 -0.12 1.23 -155.66 -0.19 -0.31 16 17 C -0.47 -12.50 8.83 -34.44 -0.30 -12.80 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.90 -26.14 13.96 55.43 0.77 -25.37 16 21 Si 0.87 20.92 25.00 -169.99 -4.25 16.67 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.26 -5.93 5.40 56.52 0.31 -5.62 16 25 C -0.18 -3.35 9.88 -26.73 -0.26 -3.62 16 26 C -0.19 -3.86 7.48 -26.73 -0.20 -4.06 16 27 C 0.15 1.85 7.51 -8.52 -0.06 1.79 16 28 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.03 5.88 -51.93 -0.31 0.73 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.34 8.04 -51.93 -0.42 0.93 16 41 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 42 H 0.07 1.41 6.56 -51.92 -0.34 1.07 16 43 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 45 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 46 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 47 H 0.09 1.96 7.06 -51.92 -0.37 1.60 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 50 H 0.10 1.25 7.53 -51.93 -0.39 0.86 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -31.14 403.05 -7.21 -38.35 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.51 Total: 3.28 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.68 Total: -0.10 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.11 Total: -34.08 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.31 Total: -30.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.25 Total: 16.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.14 -7.21 -38.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495899379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.301 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds