Wall clock time and date at job start Tue Mar 31 2020 22:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 C 1.52995 * 109.47058 * 120.00216 * 2 1 3 5 5 O 1.45210 * 109.47225 * 240.00074 * 2 1 3 6 6 C 1.34637 * 116.99497 * 59.99832 * 5 2 1 7 7 O 1.21505 * 120.00392 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99238 * 179.97438 * 6 5 2 9 9 C 1.47062 * 136.06019 * 359.63209 * 8 6 5 10 10 C 1.53760 * 87.88975 * 152.96054 * 9 8 6 11 11 C 1.53003 * 114.57507 * 272.66730 * 10 9 8 12 12 C 1.50699 * 114.08827 * 139.77831 * 10 9 8 13 13 O 1.20829 * 119.99959 * 260.80621 * 12 10 9 14 14 O 1.34221 * 119.99689 * 80.80936 * 12 10 9 15 15 C 1.45205 * 117.00079 * 185.12724 * 14 12 10 16 16 C 1.52997 * 109.47541 * 175.12807 * 15 14 12 17 17 C 1.50703 * 115.54886 * 39.55655 * 16 15 14 18 18 H 1.07996 * 120.00206 * 268.43704 * 17 16 15 19 19 C 1.37878 * 119.99914 * 88.43814 * 17 16 15 20 20 N 1.31508 * 120.00005 * 179.62679 * 19 17 16 21 21 Si 1.86800 * 119.99846 * 359.62104 * 19 17 16 22 22 H 1.48504 * 109.47080 * 91.77758 * 21 19 17 23 23 H 1.48501 * 109.47014 * 211.77700 * 21 19 17 24 24 H 1.48503 * 109.47430 * 331.77834 * 21 19 17 25 25 C 1.52994 * 117.49879 * 253.85133 * 16 15 14 26 26 C 1.52998 * 117.49751 * 185.22838 * 16 15 14 27 27 C 1.47067 * 136.05346 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46992 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47118 * 300.00014 * 1 2 3 31 31 H 1.09000 * 109.47076 * 59.99960 * 3 2 1 32 32 H 1.08999 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47287 * 300.00163 * 3 2 1 34 34 H 1.09001 * 109.47604 * 59.99760 * 4 2 1 35 35 H 1.09010 * 109.47482 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47146 * 299.99368 * 4 2 1 37 37 H 1.08995 * 113.46900 * 267.69297 * 9 8 6 38 38 H 1.09004 * 113.46736 * 38.13871 * 9 8 6 39 39 H 1.08997 * 109.46877 * 158.88520 * 11 10 9 40 40 H 1.08999 * 109.46724 * 278.88343 * 11 10 9 41 41 H 1.09002 * 109.47118 * 38.88432 * 11 10 9 42 42 H 1.09008 * 109.46637 * 295.13068 * 15 14 12 43 43 H 1.09002 * 109.46811 * 55.12107 * 15 14 12 44 44 H 0.97003 * 119.99921 * 179.97438 * 20 19 17 45 45 H 1.09006 * 117.50151 * 359.97438 * 25 16 15 46 46 H 1.09000 * 117.50130 * 145.01817 * 25 16 15 47 47 H 1.09007 * 117.49442 * 214.97346 * 26 16 15 48 48 H 1.08993 * 117.50180 * 359.97438 * 26 16 15 49 49 H 1.09000 * 113.47257 * 321.87213 * 27 8 6 50 50 H 1.09001 * 113.46397 * 92.30592 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0141 -0.6845 -1.1856 6 6 1.6522 -0.1728 -2.3773 7 8 0.9516 0.8187 -2.4252 8 7 2.0681 -0.7600 -3.5169 9 6 2.8986 -1.9219 -3.8676 10 6 2.1052 -2.0210 -5.1809 11 6 0.8242 -2.8527 -5.0893 12 6 2.9478 -2.3555 -6.3848 13 8 3.3056 -1.4780 -7.1344 14 8 3.3007 -3.6281 -6.6242 15 6 4.2062 -3.8634 -7.7347 16 6 4.5875 -5.3444 -7.7770 17 6 3.4727 -6.3116 -7.4722 18 1 3.3105 -6.6467 -6.4585 19 6 2.6597 -6.7686 -8.4877 20 7 1.6915 -7.6183 -8.2229 21 14 2.9335 -6.1809 -10.2396 22 1 3.8496 -7.1177 -10.9385 23 1 1.6330 -6.1342 -10.9550 24 1 3.5356 -4.8235 -10.2180 25 6 5.9974 -5.7243 -7.3202 26 6 5.6349 -5.7751 -8.8058 27 6 1.8960 -0.5171 -4.9571 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 -1.7489 1.2492 35 1 3.1301 -0.7209 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 3.9503 -1.6757 -4.0133 38 1 2.7528 -2.7754 -3.2053 39 1 0.1526 -2.5760 -5.9020 40 1 1.0721 -3.9112 -5.1671 41 1 0.3355 -2.6631 -4.1336 42 1 3.7156 -3.5876 -8.6682 43 1 5.1049 -3.2603 -7.6047 44 1 1.1193 -7.9395 -8.9373 45 1 6.6536 -4.9189 -6.9899 46 1 6.1189 -6.6738 -6.7990 47 1 5.5179 -6.7583 -9.2618 48 1 6.0520 -5.0034 -9.4527 49 1 0.8963 -0.1737 -5.2231 50 1 2.6832 0.0999 -5.3903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495899379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:00 Heat of formation + Delta-G solvation = -112.307442 kcal Electronic energy + Delta-G solvation = -30573.156297 eV Core-core repulsion = 26374.916839 eV Total energy + Delta-G solvation = -4198.239458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53620 -41.52746 -40.25281 -38.70357 -37.70556 -37.02080 -35.10476 -34.18906 -32.79440 -29.03054 -28.45456 -28.35980 -28.29322 -27.45307 -27.26710 -24.91679 -23.33682 -22.75706 -21.05412 -20.75971 -20.03200 -19.08120 -18.74510 -18.29355 -17.79187 -17.63853 -17.40542 -16.94105 -16.62430 -16.21390 -15.75129 -15.37993 -15.27760 -14.89683 -14.78447 -14.68815 -14.52795 -14.29719 -14.14310 -13.87803 -13.34902 -13.34403 -13.15793 -13.04585 -12.97150 -12.95239 -12.87534 -12.84992 -12.74972 -12.46709 -12.32359 -12.21700 -12.00660 -11.80394 -11.65936 -11.59259 -11.41624 -11.39469 -11.12920 -10.93046 -10.61155 -10.27221 -10.05246 -8.24226 -6.29162 0.74614 1.06971 1.34818 1.39472 1.47761 1.56195 1.81967 2.38274 2.57961 2.89961 3.09753 3.14989 3.41192 3.68799 3.73475 3.75784 3.80379 3.94215 4.00558 4.05489 4.24756 4.31684 4.34242 4.38214 4.39633 4.49057 4.59698 4.62362 4.64263 4.66859 4.75125 4.77243 4.77358 4.82216 4.85183 4.87011 4.88310 5.01706 5.13088 5.17986 5.21200 5.28389 5.32431 5.42766 5.48129 5.59201 5.71762 6.35834 6.44202 6.71559 6.81295 7.12889 7.38443 8.91270 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.002493 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.456421 B =11228.326354 C =11269.192266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.179 4.179 4 C -0.136 4.136 5 O -0.365 6.365 6 C 0.683 3.317 7 O -0.586 6.586 8 N -0.634 5.634 9 C 0.130 3.870 10 C -0.092 4.092 11 C -0.119 4.119 12 C 0.478 3.522 13 O -0.533 6.533 14 O -0.329 6.329 15 C 0.108 3.892 16 C -0.038 4.038 17 C -0.466 4.466 18 H 0.039 0.961 19 C 0.023 3.977 20 N -0.946 5.946 21 Si 0.927 3.073 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.238 1.238 25 C -0.156 4.156 26 C -0.187 4.187 27 C 0.154 3.846 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.264 0.736 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 15.454 14.950 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.236 4.236 4 C -0.193 4.193 5 O -0.279 6.279 6 C 0.440 3.560 7 O -0.477 6.477 8 N -0.376 5.376 9 C 0.008 3.992 10 C -0.094 4.094 11 C -0.176 4.176 12 C 0.321 3.679 13 O -0.424 6.424 14 O -0.243 6.243 15 C 0.034 3.966 16 C -0.039 4.039 17 C -0.504 4.504 18 H 0.057 0.943 19 C -0.174 4.174 20 N -0.586 5.586 21 Si 0.753 3.247 22 H -0.191 1.191 23 H -0.229 1.229 24 H -0.162 1.162 25 C -0.193 4.193 26 C -0.224 4.224 27 C 0.033 3.967 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.123 0.877 49 H 0.118 0.882 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.318 15.990 14.934 22.002 hybrid contribution -0.323 -0.144 -1.243 1.293 sum 1.996 15.846 13.690 21.036 Atomic orbital electron populations 1.22484 0.93845 1.02984 1.04407 1.22506 0.94763 0.92770 0.81340 1.22470 1.01643 0.95094 1.04394 1.21890 1.02446 1.01216 0.93700 1.86347 1.71348 1.56768 1.13478 1.17234 0.78380 0.80088 0.80248 1.90899 1.42711 1.27335 1.86795 1.47912 1.53296 1.32439 1.03951 1.23155 0.95745 0.88896 0.91436 1.22067 0.97615 0.98211 0.91499 1.21478 0.92946 0.99565 1.03575 1.23333 0.77960 0.80856 0.85734 1.90617 1.54371 1.49222 1.48172 1.86654 1.59804 1.27791 1.50100 1.22813 0.90991 0.96455 0.86310 1.19270 0.90216 0.91105 1.03328 1.20240 1.12286 1.23470 0.94370 0.94293 1.25710 0.94411 0.94512 1.02760 1.70019 1.20527 1.33842 1.34237 0.86089 0.76985 0.81119 0.80506 1.19148 1.22926 1.16175 1.22995 0.97555 1.02922 0.95784 1.23054 1.03960 1.02323 0.93067 1.22989 1.04981 0.93170 0.75518 0.92017 0.92054 0.88780 0.88748 0.91968 0.92083 0.91353 0.91228 0.87656 0.87458 0.87279 0.90984 0.91186 0.89983 0.92970 0.90491 0.92749 0.87339 0.89764 0.90095 0.87718 0.88215 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 2 C 0.12 2.24 1.13 -10.80 -0.01 2.22 16 3 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 4 C -0.14 -1.64 8.85 71.98 0.64 -1.01 16 5 O -0.36 -8.72 9.91 -55.46 -0.55 -9.27 16 6 C 0.68 18.39 8.26 129.79 1.07 19.47 16 7 O -0.59 -18.01 12.66 19.82 0.25 -17.76 16 8 N -0.63 -15.45 3.47 -988.23 -3.43 -18.88 16 9 C 0.13 2.87 7.80 83.27 0.65 3.52 16 10 C -0.09 -2.36 1.47 -52.51 -0.08 -2.44 16 11 C -0.12 -3.06 9.16 71.98 0.66 -2.40 16 12 C 0.48 15.70 7.03 71.24 0.50 16.21 16 13 O -0.53 -18.94 15.74 21.95 0.35 -18.60 16 14 O -0.33 -12.85 9.43 -51.33 -0.48 -13.33 16 15 C 0.11 4.22 5.40 71.98 0.39 4.61 16 16 C -0.04 -1.63 1.23 -52.93 -0.07 -1.70 16 17 C -0.47 -25.06 8.83 25.60 0.23 -24.83 16 18 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 19 C 0.02 1.31 5.47 84.66 0.46 1.77 16 20 N -0.95 -57.32 13.96 21.45 0.30 -57.02 16 21 Si 0.93 42.94 25.00 68.60 1.72 44.66 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.24 -10.07 5.40 99.48 0.54 -9.54 16 25 C -0.16 -5.46 9.88 30.59 0.30 -5.16 16 26 C -0.19 -6.91 7.48 30.59 0.23 -6.68 16 27 C 0.15 3.63 7.51 83.17 0.62 4.26 16 28 H 0.06 1.46 5.88 -2.38 -0.01 1.45 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 38 H 0.11 2.22 8.13 -2.38 -0.02 2.20 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 41 H 0.08 1.88 7.95 -2.39 -0.02 1.86 16 42 H 0.05 2.14 6.56 -2.38 -0.02 2.13 16 43 H 0.08 2.57 7.90 -2.39 -0.02 2.55 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.11 3.08 8.08 -2.38 -0.02 3.06 16 46 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.08 3.21 7.06 -2.38 -0.02 3.19 16 48 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.10 2.22 8.12 -2.39 -0.02 2.20 16 50 H 0.11 2.46 7.53 -2.39 -0.02 2.45 16 Total: -1.00 -69.21 403.05 5.70 -63.51 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.75 Total: 24.00 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.80 Total: 2.68 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -3.13 Total: -75.90 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.44 Total: -58.95 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.72 Total: 44.66 kcal Total: -69.21 5.70 -63.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495899379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.795 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds