Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33636 * 126.03877 * 2 1 4 4 N 1.31787 * 114.49916 * 179.79007 * 3 2 1 5 5 C 1.29028 * 117.12271 * 0.46563 * 4 3 2 6 6 C 1.50700 * 124.91256 * 179.81651 * 5 4 3 7 7 H 1.08999 * 109.46878 * 194.69332 * 6 5 4 8 8 N 1.46893 * 109.47190 * 314.69807 * 6 5 4 9 9 C 1.46901 * 111.00024 * 205.00185 * 8 6 5 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47108 * 120.00613 * 21 19 17 24 24 H 1.48507 * 109.47091 * 240.00414 * 21 19 17 25 25 C 1.53001 * 109.47289 * 74.69778 * 6 5 4 26 26 C 1.52999 * 117.49777 * 128.61554 * 25 6 5 27 27 C 1.52998 * 60.00371 * 252.51294 * 26 25 6 28 28 S 1.70970 * 110.16735 * 359.55203 * 5 4 3 29 29 H 1.09000 * 109.47818 * 269.96464 * 1 2 3 30 30 H 1.09004 * 109.47070 * 29.96067 * 1 2 3 31 31 H 1.09002 * 109.47181 * 149.96025 * 1 2 3 32 32 H 1.07997 * 122.75085 * 0.02936 * 3 2 1 33 33 H 1.00899 * 111.00258 * 81.05065 * 8 6 5 34 34 H 1.08995 * 109.47180 * 59.99940 * 9 8 6 35 35 H 1.09002 * 109.47373 * 300.00035 * 9 8 6 36 36 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 37 37 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 38 38 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 39 39 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 40 40 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 41 41 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 42 42 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 43 43 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 44 44 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 45 45 H 1.08992 * 115.55132 * 274.32976 * 25 6 5 46 46 H 1.09000 * 117.50123 * 0.02562 * 26 25 6 47 47 H 1.09009 * 117.49401 * 145.02183 * 26 25 6 48 48 H 1.09003 * 117.50064 * 252.51524 * 27 26 25 49 49 H 1.09003 * 117.51599 * 107.47944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8170 0.0044 5 6 3.9311 -0.4259 -0.0012 6 6 5.3531 -0.9246 -0.0016 7 1 5.3673 -1.9816 -0.2674 8 7 6.1391 -0.1626 -0.9811 9 6 7.2939 -0.9406 -1.4492 10 6 8.0866 -0.1158 -2.4651 11 1 8.4347 0.8036 -1.9942 12 8 7.2473 0.2062 -3.5759 13 6 9.2897 -0.9258 -2.9521 14 7 10.0795 -0.1148 -3.8884 15 6 10.9412 -0.9632 -4.7224 16 6 10.8697 0.8955 -3.1724 17 6 11.4699 1.8589 -4.1638 18 1 11.2827 1.7335 -5.2200 19 6 12.2573 2.9012 -3.7222 20 7 12.4849 3.0543 -2.4360 21 14 13.0006 4.0957 -4.9511 22 1 12.5956 3.7075 -6.3260 23 1 12.5156 5.4692 -4.6619 24 1 14.4813 4.0605 -4.8422 25 6 5.9583 -0.7411 1.3916 26 6 6.6281 -1.9562 2.0365 27 6 5.2777 -1.4606 2.5579 28 16 2.5436 -1.4248 -0.0009 29 1 -0.3635 -0.0006 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8896 -0.5145 32 1 1.9025 2.0874 0.0005 33 1 6.4316 0.7241 -0.5988 34 1 6.9459 -1.8602 -1.9196 35 1 7.9344 -1.1859 -0.6019 36 1 6.9006 -0.5659 -4.0437 37 1 8.9409 -1.8268 -3.4568 38 1 9.9097 -1.2038 -2.0998 39 1 11.7254 -1.4022 -4.1056 40 1 10.3444 -1.7574 -5.1710 41 1 11.3931 -0.3596 -5.5094 42 1 10.2248 1.4392 -2.4822 43 1 11.6672 0.4047 -2.6143 44 1 13.0391 3.7874 -2.1255 45 1 6.3938 0.2382 1.5897 46 1 6.6380 -2.8862 1.4682 47 1 7.5047 -1.7763 2.6590 48 1 5.2658 -0.9547 3.5233 49 1 4.3986 -2.0644 2.3326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572476259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = 25.753772 kcal Electronic energy + Delta-G solvation = -27067.880911 eV Core-core repulsion = 23350.673858 eV Total energy + Delta-G solvation = -3717.207053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.05670 -38.55708 -37.63852 -35.61527 -34.46932 -32.82743 -32.43900 -30.25638 -28.32830 -27.23541 -26.00187 -24.88286 -23.76756 -23.07318 -22.65077 -21.65937 -21.32094 -20.03550 -18.91971 -18.28108 -16.52143 -16.46630 -16.20461 -15.50797 -15.36429 -15.08639 -14.71869 -14.62944 -14.59537 -14.11320 -13.93895 -13.56686 -13.46946 -13.26099 -13.09335 -12.94009 -12.82728 -12.39240 -12.01615 -11.91467 -11.82219 -11.70745 -11.39078 -11.35182 -11.09104 -10.91058 -10.79011 -10.63382 -10.58902 -10.49868 -10.33703 -9.74443 -9.69205 -9.43563 -9.34969 -9.07334 -8.91038 -8.41252 -8.38056 -7.15635 -5.98311 -3.98256 0.56247 1.13346 1.56498 2.74885 3.34950 3.42226 3.42347 3.47813 3.95553 4.11390 4.37670 4.47694 4.57859 4.67313 4.68548 4.84910 4.86771 4.90804 5.01284 5.09741 5.14354 5.26679 5.34331 5.35582 5.37349 5.45630 5.49694 5.59758 5.60540 5.64916 5.75742 5.77669 5.81481 5.85088 6.07043 6.08257 6.12009 6.37860 6.54083 6.74418 6.87564 7.30854 7.33142 7.34958 7.70223 7.85452 8.12852 8.22216 8.32199 8.60481 9.09410 9.65578 11.12923 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.550850 B =12228.075822 C =12582.997872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.231 4.231 3 C 0.038 3.962 4 N -0.453 5.453 5 C 0.080 3.920 6 C 0.197 3.803 7 H 0.094 0.906 8 N -0.657 5.657 9 C 0.028 3.972 10 C 0.120 3.880 11 H 0.100 0.900 12 O -0.530 6.530 13 C 0.027 3.973 14 N -0.531 5.531 15 C 0.041 3.959 16 C 0.193 3.807 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.053 3.947 20 N -0.901 5.901 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.286 1.286 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.174 4.174 28 S 0.100 5.900 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.172 0.828 33 H 0.356 0.644 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.360 0.640 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.011 0.989 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.030 0.970 43 H -0.012 1.012 44 H 0.260 0.740 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 -13.440 9.758 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.352 4.352 3 C -0.113 4.113 4 N -0.165 5.165 5 C -0.200 4.200 6 C 0.082 3.918 7 H 0.112 0.888 8 N -0.288 5.288 9 C -0.102 4.102 10 C 0.059 3.941 11 H 0.118 0.882 12 O -0.332 6.332 13 C -0.103 4.103 14 N -0.255 5.255 15 C -0.107 4.107 16 C 0.068 3.932 17 C -0.540 4.540 18 H 0.082 0.918 19 C -0.148 4.148 20 N -0.541 5.541 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.200 4.200 26 C -0.208 4.208 27 C -0.212 4.212 28 S 0.355 5.645 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.204 0.796 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.006 0.994 44 H 0.069 0.931 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.095 -13.288 9.195 27.374 hybrid contribution 1.232 0.677 0.735 1.586 sum -20.863 -12.611 9.930 26.323 Atomic orbital electron populations 1.20198 0.86954 1.03348 1.02711 1.25906 1.01390 0.94903 1.12993 1.21749 0.87052 0.99986 1.02484 1.66139 1.17170 1.18555 1.14641 1.26828 0.99612 0.91201 1.02336 1.19593 0.85606 0.97319 0.89237 0.88817 1.60281 1.23524 1.06368 1.38637 1.22784 0.91575 0.97293 0.98559 1.21846 0.87996 0.98356 0.85893 0.88194 1.86702 1.66944 1.34932 1.44612 1.22680 0.96006 0.95784 0.95859 1.62019 1.26822 1.13668 1.22991 1.22189 0.94937 0.95756 0.97835 1.19780 0.90711 0.89154 0.93574 1.21199 1.28607 1.10398 0.93835 0.91831 1.24991 0.96670 0.97826 0.95267 1.69964 1.39220 1.31684 1.13203 0.86447 0.78539 0.80960 0.81521 1.19648 1.21002 1.21221 1.23140 1.04798 0.98237 0.93791 1.23052 0.96566 0.97517 1.03643 1.22919 0.96319 1.03825 0.98165 1.83837 0.99263 1.12026 1.69362 0.90773 0.90238 0.91252 0.81058 0.82333 0.91069 0.94007 0.79554 0.92183 0.95153 0.97098 0.93934 0.90964 0.95164 0.99428 0.93077 0.86838 0.88605 0.88318 0.88621 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.42 36.00 0.38 -0.06 16 2 C -0.23 -2.14 6.60 -35.92 -0.24 -2.38 16 3 C 0.04 0.42 11.25 -19.18 -0.22 0.20 16 4 N -0.45 -5.96 10.51 -11.86 -0.12 -6.08 16 5 C 0.08 0.92 5.90 -13.46 -0.08 0.85 16 6 C 0.20 2.12 2.71 -68.87 -0.19 1.93 16 7 H 0.09 0.90 7.55 -51.93 -0.39 0.51 16 8 N -0.66 -8.45 6.07 -107.96 -0.66 -9.11 16 9 C 0.03 0.35 5.15 -3.82 -0.02 0.33 16 10 C 0.12 1.96 3.25 -26.73 -0.09 1.87 16 11 H 0.10 1.96 6.73 -51.93 -0.35 1.61 16 12 O -0.53 -9.37 13.11 -35.23 -0.46 -9.83 16 13 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 14 N -0.53 -11.60 4.59 -244.37 -1.12 -12.72 16 15 C 0.04 0.81 9.31 60.07 0.56 1.37 16 16 C 0.19 5.10 4.55 -4.98 -0.02 5.08 16 17 C -0.50 -14.47 8.58 -34.44 -0.30 -14.77 16 18 H 0.06 1.83 7.10 -52.49 -0.37 1.46 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 21 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.18 -1.76 5.07 -90.62 -0.46 -2.22 16 26 C -0.17 -1.42 10.18 -26.73 -0.27 -1.70 16 27 C -0.17 -1.48 9.87 -26.73 -0.26 -1.74 16 28 S 0.10 0.94 23.18 -107.50 -2.49 -1.55 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.36 5.03 8.34 -39.29 -0.33 4.70 16 34 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.04 0.50 8.01 -51.93 -0.42 0.08 16 36 H 0.36 5.00 9.05 45.56 0.41 5.42 16 37 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 38 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 39 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 40 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 41 H 0.07 1.52 7.01 -51.93 -0.36 1.15 16 42 H 0.03 0.85 6.60 -51.93 -0.34 0.51 16 43 H -0.01 -0.34 8.07 -51.92 -0.42 -0.76 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 1.25 7.92 -51.93 -0.41 0.84 16 46 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 47 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 413.91 15.07 6.24 6.24 Total: -1.00 -33.31 413.91 -11.78 -45.09 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.56 Total: 6.57 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.32 Total: -9.34 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -1.16 Total: -54.36 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.46 Total: -9.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.31 -11.78 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572476259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.848 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds