Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33636 * 126.03877 * 2 1 4 4 N 1.31787 * 114.49916 * 179.79007 * 3 2 1 5 5 C 1.29028 * 117.12271 * 0.46563 * 4 3 2 6 6 C 1.50700 * 124.91256 * 179.81651 * 5 4 3 7 7 H 1.08999 * 109.46878 * 194.69332 * 6 5 4 8 8 N 1.46893 * 109.47190 * 314.69807 * 6 5 4 9 9 C 1.46901 * 111.00024 * 205.00185 * 8 6 5 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47108 * 120.00613 * 21 19 17 24 24 H 1.48507 * 109.47091 * 240.00414 * 21 19 17 25 25 C 1.53001 * 109.47289 * 74.69778 * 6 5 4 26 26 C 1.52999 * 117.49777 * 128.61554 * 25 6 5 27 27 C 1.52998 * 60.00371 * 252.51294 * 26 25 6 28 28 S 1.70970 * 110.16735 * 359.55203 * 5 4 3 29 29 H 1.09000 * 109.47818 * 269.96464 * 1 2 3 30 30 H 1.09004 * 109.47070 * 29.96067 * 1 2 3 31 31 H 1.09002 * 109.47181 * 149.96025 * 1 2 3 32 32 H 1.07997 * 122.75085 * 0.02936 * 3 2 1 33 33 H 1.00899 * 111.00258 * 81.05065 * 8 6 5 34 34 H 1.08995 * 109.47180 * 59.99940 * 9 8 6 35 35 H 1.09002 * 109.47373 * 300.00035 * 9 8 6 36 36 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 37 37 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 38 38 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 39 39 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 40 40 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 41 41 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 42 42 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 43 43 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 44 44 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 45 45 H 1.08992 * 115.55132 * 274.32976 * 25 6 5 46 46 H 1.09000 * 117.50123 * 0.02562 * 26 25 6 47 47 H 1.09009 * 117.49401 * 145.02183 * 26 25 6 48 48 H 1.09003 * 117.50064 * 252.51524 * 27 26 25 49 49 H 1.09003 * 117.51599 * 107.47944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8170 0.0044 5 6 3.9311 -0.4259 -0.0012 6 6 5.3531 -0.9246 -0.0016 7 1 5.3673 -1.9816 -0.2674 8 7 6.1391 -0.1626 -0.9811 9 6 7.2939 -0.9406 -1.4492 10 6 8.0866 -0.1158 -2.4651 11 1 8.4347 0.8036 -1.9942 12 8 7.2473 0.2062 -3.5759 13 6 9.2897 -0.9258 -2.9521 14 7 10.0795 -0.1148 -3.8884 15 6 10.9412 -0.9632 -4.7224 16 6 10.8697 0.8955 -3.1724 17 6 11.4699 1.8589 -4.1638 18 1 11.2827 1.7335 -5.2200 19 6 12.2573 2.9012 -3.7222 20 7 12.4849 3.0543 -2.4360 21 14 13.0006 4.0957 -4.9511 22 1 12.5956 3.7075 -6.3260 23 1 12.5156 5.4692 -4.6619 24 1 14.4813 4.0605 -4.8422 25 6 5.9583 -0.7411 1.3916 26 6 6.6281 -1.9562 2.0365 27 6 5.2777 -1.4606 2.5579 28 16 2.5436 -1.4248 -0.0009 29 1 -0.3635 -0.0006 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8896 -0.5145 32 1 1.9025 2.0874 0.0005 33 1 6.4316 0.7241 -0.5988 34 1 6.9459 -1.8602 -1.9196 35 1 7.9344 -1.1859 -0.6019 36 1 6.9006 -0.5659 -4.0437 37 1 8.9409 -1.8268 -3.4568 38 1 9.9097 -1.2038 -2.0998 39 1 11.7254 -1.4022 -4.1056 40 1 10.3444 -1.7574 -5.1710 41 1 11.3931 -0.3596 -5.5094 42 1 10.2248 1.4392 -2.4822 43 1 11.6672 0.4047 -2.6143 44 1 13.0391 3.7874 -2.1255 45 1 6.3938 0.2382 1.5897 46 1 6.6380 -2.8862 1.4682 47 1 7.5047 -1.7763 2.6590 48 1 5.2658 -0.9547 3.5233 49 1 4.3986 -2.0644 2.3326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572476259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = 0.298745 kcal Electronic energy + Delta-G solvation = -27068.984724 eV Core-core repulsion = 23350.673858 eV Total energy + Delta-G solvation = -3718.310866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86529 -39.62875 -38.79095 -37.12948 -35.48617 -34.60234 -33.54240 -31.41032 -29.61172 -29.04817 -27.01425 -26.08619 -25.08606 -24.26669 -23.33014 -22.85479 -22.21921 -21.69935 -19.72545 -19.06509 -18.60053 -17.59093 -17.18131 -16.84022 -16.50121 -16.41738 -15.99922 -15.92822 -15.48435 -15.44491 -15.01203 -14.86580 -14.71940 -14.26100 -14.00010 -13.89515 -13.79980 -13.63754 -13.39492 -13.14413 -12.99658 -12.87992 -12.56238 -12.55424 -12.49886 -12.45285 -12.31509 -12.13918 -12.06160 -11.53613 -11.49790 -11.30386 -11.22351 -10.75011 -10.61604 -10.41156 -10.09691 -9.67083 -9.35406 -8.92446 -8.21150 -6.30111 -0.20227 0.40042 0.79361 1.38409 1.40273 1.53561 1.93620 2.39796 2.71702 2.94451 3.11521 3.33610 3.46110 3.61295 3.76398 3.87551 3.93556 3.99445 4.07126 4.16060 4.24853 4.29961 4.34241 4.37519 4.48562 4.55486 4.60236 4.63784 4.70913 4.73654 4.77441 4.80093 4.92963 4.94053 5.04533 5.08595 5.11405 5.12659 5.17292 5.24689 5.31438 5.33586 5.65248 5.95875 6.07349 6.23420 6.36281 6.67111 6.86217 6.92756 7.15981 7.39236 8.90179 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.550850 B =12228.075822 C =12582.997872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.224 4.224 3 C 0.009 3.991 4 N -0.489 5.489 5 C 0.055 3.945 6 C 0.202 3.798 7 H 0.110 0.890 8 N -0.669 5.669 9 C 0.044 3.956 10 C 0.127 3.873 11 H 0.055 0.945 12 O -0.553 6.553 13 C 0.028 3.972 14 N -0.544 5.544 15 C 0.043 3.957 16 C 0.211 3.789 17 C -0.521 4.521 18 H 0.060 0.940 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.275 1.275 25 C -0.193 4.193 26 C -0.161 4.161 27 C -0.167 4.167 28 S 0.137 5.863 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.343 0.657 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.377 0.623 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.008 0.992 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.002 0.998 43 H -0.040 1.040 44 H 0.264 0.736 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -15.436 9.081 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.345 4.345 3 C -0.141 4.141 4 N -0.202 5.202 5 C -0.223 4.223 6 C 0.088 3.912 7 H 0.128 0.872 8 N -0.299 5.299 9 C -0.086 4.086 10 C 0.067 3.933 11 H 0.073 0.927 12 O -0.358 6.358 13 C -0.101 4.101 14 N -0.268 5.268 15 C -0.105 4.105 16 C 0.084 3.916 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.205 1.205 24 H -0.201 1.201 25 C -0.214 4.214 26 C -0.198 4.198 27 C -0.205 4.205 28 S 0.392 5.608 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.198 0.802 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.225 0.775 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.020 0.980 43 H -0.022 1.022 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.639 -15.324 8.510 29.429 hybrid contribution 1.597 1.259 0.962 2.250 sum -22.042 -14.065 9.472 27.810 Atomic orbital electron populations 1.20355 0.84553 1.04440 1.03953 1.26377 1.02976 0.94440 1.10696 1.21993 0.86825 1.01170 1.04150 1.66118 1.18607 1.19912 1.15605 1.26955 1.00665 0.91495 1.03211 1.19624 0.85080 0.97542 0.88983 0.87228 1.60282 1.23637 1.06217 1.39739 1.22586 0.91255 0.97084 0.97650 1.21636 0.88324 0.96936 0.86448 0.92686 1.86653 1.67159 1.36688 1.45325 1.22793 0.95409 0.96512 0.95404 1.61910 1.26493 1.14684 1.23742 1.22209 0.95350 0.96012 0.96944 1.19377 0.89627 0.89869 0.92710 1.21515 1.29085 1.11317 0.94016 0.92206 1.25923 0.97052 0.99678 0.97231 1.70087 1.39855 1.32486 1.15141 0.85350 0.77958 0.78272 0.79148 1.18814 1.20546 1.20103 1.22987 1.06215 0.98036 0.94171 1.23135 0.96458 0.97130 1.03067 1.22959 0.96779 1.03280 0.97497 1.83598 0.97731 1.11047 1.68457 0.89320 0.89134 0.90150 0.80152 0.83847 0.88368 0.93411 0.77548 0.88265 0.95275 0.97331 0.89774 0.92908 0.98011 1.02239 0.92761 0.88947 0.87115 0.88265 0.88532 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 71.23 0.74 0.03 16 2 C -0.22 -3.83 6.60 24.64 0.16 -3.67 16 3 C 0.01 0.19 11.25 83.65 0.94 1.13 16 4 N -0.49 -13.11 10.51 -191.45 -2.01 -15.12 16 5 C 0.06 1.26 5.90 88.52 0.52 1.78 16 6 C 0.20 4.21 2.71 44.17 0.12 4.33 16 7 H 0.11 1.88 7.55 -2.39 -0.02 1.86 16 8 N -0.67 -17.37 6.07 -495.47 -3.01 -20.38 16 9 C 0.04 1.06 5.15 86.30 0.44 1.50 16 10 C 0.13 4.21 3.25 30.59 0.10 4.31 16 11 H 0.06 2.32 6.73 -2.39 -0.02 2.31 16 12 O -0.55 -19.48 13.11 -148.98 -1.95 -21.43 16 13 C 0.03 0.94 4.65 86.30 0.40 1.34 16 14 N -0.54 -23.90 4.59 -927.06 -4.25 -28.16 16 15 C 0.04 1.65 9.31 127.69 1.19 2.84 16 16 C 0.21 11.61 4.55 85.56 0.39 12.00 16 17 C -0.52 -30.84 8.58 25.60 0.22 -30.62 16 18 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 21 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 22 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 C -0.19 -3.80 5.07 -10.79 -0.05 -3.85 16 26 C -0.16 -2.47 10.18 30.59 0.31 -2.15 16 27 C -0.17 -2.66 9.87 30.60 0.30 -2.36 16 28 S 0.14 2.32 23.18 -56.49 -1.31 1.01 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.34 10.37 8.34 -89.70 -0.75 9.62 16 34 H 0.10 1.85 8.05 -2.39 -0.02 1.83 16 35 H 0.05 1.10 8.01 -2.39 -0.02 1.08 16 36 H 0.38 9.87 9.05 -74.06 -0.67 9.20 16 37 H 0.10 2.57 7.75 -2.39 -0.02 2.56 16 38 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 39 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 40 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 41 H 0.05 2.20 7.01 -2.39 -0.02 2.18 16 42 H 0.00 0.11 6.60 -2.39 -0.02 0.09 16 43 H -0.04 -2.37 8.07 -2.38 -0.02 -2.39 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.09 2.20 7.92 -2.39 -0.02 2.18 16 46 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16 47 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.66 413.91 -4.44 -79.10 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.47 Total: 27.58 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 6.25 Total: -13.01 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -8.99 Total: -121.34 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.95 Total: -21.43 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -74.66 -4.44 -79.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572476259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.394 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds