Wall clock time and date at job start Tue Mar 31 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33642 * 126.04131 * 2 1 4 4 N 1.31777 * 114.50081 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12710 * 359.97438 * 4 3 2 6 6 C 1.50704 * 124.91852 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47063 * 195.03207 * 6 5 4 8 8 N 1.46902 * 109.46712 * 315.03058 * 6 5 4 9 9 C 1.46904 * 110.99534 * 204.99963 * 8 6 5 10 10 C 1.53000 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47253 * 305.00344 * 10 9 8 12 12 O 1.42900 * 109.47194 * 64.99751 * 10 9 8 13 13 C 1.52998 * 109.47107 * 184.99848 * 10 9 8 14 14 N 1.46899 * 109.46858 * 175.04575 * 13 10 9 15 15 C 1.46903 * 110.99991 * 163.94840 * 14 13 10 16 16 C 1.46902 * 111.00138 * 287.89426 * 14 13 10 17 17 C 1.50702 * 109.47206 * 170.00004 * 16 14 13 18 18 H 1.07990 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99588 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99737 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.46938 * 120.00335 * 21 19 17 24 24 H 1.48505 * 109.46930 * 240.00323 * 21 19 17 25 25 C 1.53002 * 109.46969 * 75.02796 * 6 5 4 26 26 C 1.53003 * 117.49633 * 128.62245 * 25 6 5 27 27 C 1.52998 * 117.49490 * 60.00151 * 25 6 5 28 28 S 1.70976 * 110.16647 * 0.23472 * 5 4 3 29 29 H 1.09005 * 109.46718 * 89.97374 * 1 2 3 30 30 H 1.08998 * 109.47216 * 209.97345 * 1 2 3 31 31 H 1.09003 * 109.46775 * 329.97440 * 1 2 3 32 32 H 1.08001 * 122.74683 * 0.02562 * 3 2 1 33 33 H 1.00901 * 111.00190 * 81.04629 * 8 6 5 34 34 H 1.08996 * 109.47355 * 59.99871 * 9 8 6 35 35 H 1.09001 * 109.46826 * 299.99768 * 9 8 6 36 36 H 0.96698 * 114.00266 * 60.00042 * 12 10 9 37 37 H 1.08997 * 109.47560 * 55.04389 * 13 10 9 38 38 H 1.08998 * 109.46907 * 295.04026 * 13 10 9 39 39 H 1.08998 * 109.47439 * 189.27288 * 15 14 13 40 40 H 1.08994 * 109.47470 * 69.26701 * 15 14 13 41 41 H 1.09004 * 109.46549 * 309.26905 * 15 14 13 42 42 H 1.08997 * 109.47475 * 290.00611 * 16 14 13 43 43 H 1.09000 * 109.46537 * 50.00068 * 16 14 13 44 44 H 0.97003 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09001 * 115.54802 * 274.33175 * 25 6 5 46 46 H 1.08995 * 117.49644 * 0.02562 * 26 25 6 47 47 H 1.09001 * 117.49313 * 145.01971 * 26 25 6 48 48 H 1.09002 * 117.49340 * 214.97355 * 27 25 6 49 49 H 1.09000 * 117.50395 * 359.97369 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5844 0.8170 0.0005 5 6 3.9311 -0.4259 0.0015 6 6 5.3532 -0.9247 0.0017 7 1 5.3674 -1.9817 -0.2640 8 7 6.1394 -0.1630 -0.9779 9 6 7.2943 -0.9412 -1.4455 10 6 8.0873 -0.1166 -2.4614 11 1 7.4249 0.2039 -3.2655 12 8 8.6414 1.0310 -1.8149 13 6 9.2168 -0.9706 -3.0409 14 7 9.9037 -0.2201 -4.1006 15 6 11.2038 -0.8265 -4.4171 16 6 9.0645 -0.1176 -5.3019 17 6 9.6881 0.8556 -6.2688 18 1 10.6153 1.3483 -6.0164 19 6 9.0753 1.1161 -7.4762 20 7 7.9464 0.5157 -7.7837 21 14 9.8487 2.3219 -8.6751 22 1 11.1071 2.8573 -8.0962 23 1 10.1485 1.6264 -9.9524 24 1 8.9054 3.4403 -8.9300 25 6 5.9580 -0.7408 1.3950 26 6 6.6277 -1.9556 2.0405 27 6 5.2771 -1.4599 2.5612 28 16 2.5436 -1.4249 -0.0047 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5143 32 1 1.9025 2.0875 0.0004 33 1 6.4317 0.7240 -0.5959 34 1 6.9464 -1.8609 -1.9157 35 1 7.9345 -1.1861 -0.5980 36 1 9.2422 0.8206 -1.0870 37 1 8.8017 -1.8887 -3.4566 38 1 9.9270 -1.2176 -2.2518 39 1 11.7612 -0.1655 -5.0807 40 1 11.0470 -1.7867 -4.9084 41 1 11.7680 -0.9772 -3.4966 42 1 8.9837 -1.0970 -5.7734 43 1 8.0713 0.2340 -5.0222 44 1 7.5151 0.6992 -8.6330 45 1 6.3934 0.2387 1.5929 46 1 6.6377 -2.8857 1.4723 47 1 7.5040 -1.7755 2.6631 48 1 5.2650 -0.9537 3.5265 49 1 4.3980 -2.0637 2.3359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572476260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:23 Heat of formation + Delta-G solvation = 24.589261 kcal Electronic energy + Delta-G solvation = -27110.742414 eV Core-core repulsion = 23393.484864 eV Total energy + Delta-G solvation = -3717.257550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.03944 -38.60105 -37.69065 -35.65993 -34.50036 -32.79433 -32.42685 -30.27529 -28.33921 -27.23466 -25.98325 -24.86900 -23.75242 -23.07748 -22.69320 -21.59549 -21.37656 -20.02234 -18.91336 -18.26211 -16.60419 -16.39225 -16.20552 -15.73522 -15.39713 -15.04053 -14.70052 -14.65129 -14.46897 -14.18135 -13.90627 -13.58349 -13.39373 -13.27609 -13.08488 -13.00677 -12.76579 -12.34000 -12.05235 -11.91230 -11.85108 -11.74107 -11.35659 -11.34182 -11.12541 -10.90848 -10.83384 -10.66328 -10.58020 -10.53978 -10.30685 -9.74952 -9.67534 -9.50182 -9.31574 -9.07399 -8.87751 -8.43078 -8.35920 -7.15716 -5.95785 -3.96026 0.59410 1.16833 1.60057 2.77551 3.36230 3.39037 3.43383 3.48674 3.96819 4.12727 4.35460 4.49012 4.56225 4.64010 4.71076 4.80863 4.87987 4.90924 5.00617 5.09190 5.19708 5.25779 5.31606 5.36273 5.39495 5.44727 5.49411 5.54760 5.60358 5.63886 5.76054 5.76948 5.80945 5.83307 6.07358 6.10276 6.11463 6.38195 6.58935 6.74383 6.90585 7.34011 7.36859 7.40067 7.72501 7.86481 8.11214 8.17343 8.26621 8.61743 9.11322 9.67613 11.15362 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002575 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.909543 B =10872.597685 C =12536.318577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.230 4.230 3 C 0.037 3.963 4 N -0.453 5.453 5 C 0.077 3.923 6 C 0.197 3.803 7 H 0.094 0.906 8 N -0.662 5.662 9 C 0.031 3.969 10 C 0.115 3.885 11 H 0.114 0.886 12 O -0.541 6.541 13 C 0.028 3.972 14 N -0.532 5.532 15 C 0.041 3.959 16 C 0.191 3.809 17 C -0.502 4.502 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.284 1.284 25 C -0.176 4.176 26 C -0.172 4.172 27 C -0.175 4.175 28 S 0.104 5.896 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.358 0.642 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.041 0.959 42 H -0.012 1.012 43 H 0.033 0.967 44 H 0.260 0.740 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -7.255 22.829 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.351 4.351 3 C -0.114 4.114 4 N -0.165 5.165 5 C -0.203 4.203 6 C 0.082 3.918 7 H 0.112 0.888 8 N -0.294 5.294 9 C -0.099 4.099 10 C 0.055 3.945 11 H 0.132 0.868 12 O -0.344 6.344 13 C -0.102 4.102 14 N -0.256 5.256 15 C -0.107 4.107 16 C 0.066 3.934 17 C -0.541 4.541 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.197 4.197 26 C -0.209 4.209 27 C -0.212 4.212 28 S 0.359 5.641 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.190 0.810 33 H 0.181 0.819 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.203 0.797 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.006 0.994 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.459 -7.304 21.827 25.711 hybrid contribution 0.651 0.356 0.046 0.743 sum -10.808 -6.948 21.872 25.367 Atomic orbital electron populations 1.20205 0.86930 1.03145 1.02964 1.25921 1.01428 0.94922 1.12815 1.21738 0.87043 0.99987 1.02617 1.66127 1.17209 1.18552 1.14662 1.26819 0.99641 0.91270 1.02550 1.19595 0.85617 0.97407 0.89149 0.88762 1.60268 1.23401 1.06712 1.39028 1.22751 0.91577 0.97620 0.97994 1.22009 0.93024 0.85827 0.93641 0.86841 1.86723 1.64656 1.32040 1.50933 1.22657 0.96338 0.95118 0.96074 1.62052 1.04044 1.48716 1.10783 1.22183 0.92260 0.97247 0.99044 1.19804 0.92875 0.95584 0.85104 1.21182 1.08437 1.24203 1.00290 0.91885 1.24987 0.95049 0.96465 0.98215 1.69968 1.17421 1.43243 1.23277 0.86457 0.79367 0.80979 0.80714 1.19683 1.21230 1.20998 1.23117 1.04748 0.98021 0.93811 1.23050 0.96524 0.97644 1.03661 1.22921 0.96352 1.03830 0.98132 1.83862 0.99178 1.11943 1.69163 0.90542 0.91309 0.90327 0.81038 0.81860 0.90415 0.94719 0.79688 0.95128 0.92242 0.90968 0.97040 0.94001 0.99396 0.94885 0.93068 0.86915 0.88580 0.88440 0.88639 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.11 16 2 C -0.23 -2.28 6.60 -35.92 -0.24 -2.52 16 3 C 0.04 0.43 11.25 -19.19 -0.22 0.21 16 4 N -0.45 -6.14 10.50 -11.86 -0.12 -6.26 16 5 C 0.08 0.93 5.90 -13.45 -0.08 0.85 16 6 C 0.20 2.16 2.71 -68.86 -0.19 1.98 16 7 H 0.09 0.96 7.55 -51.93 -0.39 0.57 16 8 N -0.66 -8.75 6.20 -107.95 -0.67 -9.42 16 9 C 0.03 0.39 5.16 -3.82 -0.02 0.37 16 10 C 0.11 1.90 3.26 -26.73 -0.09 1.81 16 11 H 0.11 2.37 6.46 -51.93 -0.34 2.03 16 12 O -0.54 -9.02 12.80 -35.23 -0.45 -9.47 16 13 C 0.03 0.48 4.61 -3.83 -0.02 0.47 16 14 N -0.53 -11.67 4.66 -244.37 -1.14 -12.80 16 15 C 0.04 0.81 9.32 60.07 0.56 1.37 16 16 C 0.19 5.11 4.57 -4.97 -0.02 5.09 16 17 C -0.50 -14.58 8.58 -34.44 -0.30 -14.87 16 18 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 C -0.18 -1.62 5.07 -90.62 -0.46 -2.08 16 26 C -0.17 -1.29 10.18 -26.73 -0.27 -1.56 16 27 C -0.17 -1.39 9.87 -26.73 -0.26 -1.65 16 28 S 0.10 1.05 23.18 -107.50 -2.49 -1.45 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.36 4.99 7.89 -39.29 -0.31 4.68 16 34 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.03 0.37 8.01 -51.93 -0.42 -0.05 16 36 H 0.36 4.42 9.05 45.56 0.41 4.83 16 37 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 38 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 39 H 0.07 1.52 7.02 -51.93 -0.36 1.15 16 40 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 41 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 42 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 43 H 0.03 0.95 6.34 -51.93 -0.33 0.62 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.11 1.12 7.92 -51.93 -0.41 0.71 16 46 H 0.10 0.67 8.05 -51.93 -0.42 0.26 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 412.99 15.07 6.22 6.22 Total: -1.00 -33.58 412.99 -11.78 -45.36 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.52 Total: 6.38 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.32 Total: -9.17 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -1.20 Total: -55.17 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.45 Total: -9.47 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.58 -11.78 -45.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572476260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.946 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds