Wall clock time and date at job start Tue Mar 31 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33642 * 126.04131 * 2 1 4 4 N 1.31777 * 114.50081 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12710 * 359.97438 * 4 3 2 6 6 C 1.50704 * 124.91852 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47063 * 195.03207 * 6 5 4 8 8 N 1.46902 * 109.46712 * 315.03058 * 6 5 4 9 9 C 1.46904 * 110.99534 * 204.99963 * 8 6 5 10 10 C 1.53000 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47253 * 305.00344 * 10 9 8 12 12 O 1.42900 * 109.47194 * 64.99751 * 10 9 8 13 13 C 1.52998 * 109.47107 * 184.99848 * 10 9 8 14 14 N 1.46899 * 109.46858 * 175.04575 * 13 10 9 15 15 C 1.46903 * 110.99991 * 163.94840 * 14 13 10 16 16 C 1.46902 * 111.00138 * 287.89426 * 14 13 10 17 17 C 1.50702 * 109.47206 * 170.00004 * 16 14 13 18 18 H 1.07990 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99588 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99737 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.46938 * 120.00335 * 21 19 17 24 24 H 1.48505 * 109.46930 * 240.00323 * 21 19 17 25 25 C 1.53002 * 109.46969 * 75.02796 * 6 5 4 26 26 C 1.53003 * 117.49633 * 128.62245 * 25 6 5 27 27 C 1.52998 * 117.49490 * 60.00151 * 25 6 5 28 28 S 1.70976 * 110.16647 * 0.23472 * 5 4 3 29 29 H 1.09005 * 109.46718 * 89.97374 * 1 2 3 30 30 H 1.08998 * 109.47216 * 209.97345 * 1 2 3 31 31 H 1.09003 * 109.46775 * 329.97440 * 1 2 3 32 32 H 1.08001 * 122.74683 * 0.02562 * 3 2 1 33 33 H 1.00901 * 111.00190 * 81.04629 * 8 6 5 34 34 H 1.08996 * 109.47355 * 59.99871 * 9 8 6 35 35 H 1.09001 * 109.46826 * 299.99768 * 9 8 6 36 36 H 0.96698 * 114.00266 * 60.00042 * 12 10 9 37 37 H 1.08997 * 109.47560 * 55.04389 * 13 10 9 38 38 H 1.08998 * 109.46907 * 295.04026 * 13 10 9 39 39 H 1.08998 * 109.47439 * 189.27288 * 15 14 13 40 40 H 1.08994 * 109.47470 * 69.26701 * 15 14 13 41 41 H 1.09004 * 109.46549 * 309.26905 * 15 14 13 42 42 H 1.08997 * 109.47475 * 290.00611 * 16 14 13 43 43 H 1.09000 * 109.46537 * 50.00068 * 16 14 13 44 44 H 0.97003 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09001 * 115.54802 * 274.33175 * 25 6 5 46 46 H 1.08995 * 117.49644 * 0.02562 * 26 25 6 47 47 H 1.09001 * 117.49313 * 145.01971 * 26 25 6 48 48 H 1.09002 * 117.49340 * 214.97355 * 27 25 6 49 49 H 1.09000 * 117.50395 * 359.97369 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5844 0.8170 0.0005 5 6 3.9311 -0.4259 0.0015 6 6 5.3532 -0.9247 0.0017 7 1 5.3674 -1.9817 -0.2640 8 7 6.1394 -0.1630 -0.9779 9 6 7.2943 -0.9412 -1.4455 10 6 8.0873 -0.1166 -2.4614 11 1 7.4249 0.2039 -3.2655 12 8 8.6414 1.0310 -1.8149 13 6 9.2168 -0.9706 -3.0409 14 7 9.9037 -0.2201 -4.1006 15 6 11.2038 -0.8265 -4.4171 16 6 9.0645 -0.1176 -5.3019 17 6 9.6881 0.8556 -6.2688 18 1 10.6153 1.3483 -6.0164 19 6 9.0753 1.1161 -7.4762 20 7 7.9464 0.5157 -7.7837 21 14 9.8487 2.3219 -8.6751 22 1 11.1071 2.8573 -8.0962 23 1 10.1485 1.6264 -9.9524 24 1 8.9054 3.4403 -8.9300 25 6 5.9580 -0.7408 1.3950 26 6 6.6277 -1.9556 2.0405 27 6 5.2771 -1.4599 2.5612 28 16 2.5436 -1.4249 -0.0047 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5143 32 1 1.9025 2.0875 0.0004 33 1 6.4317 0.7240 -0.5959 34 1 6.9464 -1.8609 -1.9157 35 1 7.9345 -1.1861 -0.5980 36 1 9.2422 0.8206 -1.0870 37 1 8.8017 -1.8887 -3.4566 38 1 9.9270 -1.2176 -2.2518 39 1 11.7612 -0.1655 -5.0807 40 1 11.0470 -1.7867 -4.9084 41 1 11.7680 -0.9772 -3.4966 42 1 8.9837 -1.0970 -5.7734 43 1 8.0713 0.2340 -5.0222 44 1 7.5151 0.6992 -8.6330 45 1 6.3934 0.2387 1.5929 46 1 6.6377 -2.8857 1.4723 47 1 7.5040 -1.7755 2.6631 48 1 5.2650 -0.9537 3.5265 49 1 4.3980 -2.0637 2.3359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572476260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:23 Heat of formation + Delta-G solvation = -1.306881 kcal Electronic energy + Delta-G solvation = -27111.865355 eV Core-core repulsion = 23393.484864 eV Total energy + Delta-G solvation = -3718.380491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88301 -39.69329 -38.78534 -37.17972 -35.48173 -34.60608 -33.55689 -31.43941 -29.61971 -29.08182 -27.02126 -26.09318 -25.11179 -24.28562 -23.30276 -22.82165 -22.21530 -21.69949 -19.74820 -19.10127 -18.61197 -17.51874 -17.28882 -16.93585 -16.55967 -16.44217 -15.99097 -15.87123 -15.47793 -15.42707 -15.07254 -14.88355 -14.73629 -14.12425 -14.06283 -13.97331 -13.75785 -13.64048 -13.45364 -13.14845 -13.02186 -12.87343 -12.57079 -12.56243 -12.52294 -12.42844 -12.30253 -12.16271 -12.08138 -11.52734 -11.46065 -11.30761 -11.20912 -10.82063 -10.60910 -10.45117 -10.13118 -9.69138 -9.35659 -8.93959 -8.20249 -6.29631 -0.22682 0.37750 0.77393 1.38656 1.40507 1.53787 1.91404 2.40160 2.73749 2.95368 3.12363 3.32946 3.44461 3.63825 3.71582 3.87056 3.97107 4.04016 4.05415 4.15870 4.20049 4.28434 4.34234 4.35853 4.47740 4.55198 4.62070 4.63350 4.71025 4.74517 4.78450 4.79830 4.90683 4.96838 5.03829 5.08652 5.12110 5.14482 5.20918 5.27561 5.31846 5.32515 5.65315 5.96904 6.07721 6.35369 6.36500 6.66611 6.86653 6.88950 7.07519 7.39699 8.91160 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002575 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.909543 B =10872.597685 C =12536.318577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.224 4.224 3 C 0.009 3.991 4 N -0.486 5.486 5 C 0.054 3.946 6 C 0.200 3.800 7 H 0.102 0.898 8 N -0.682 5.682 9 C 0.047 3.953 10 C 0.124 3.876 11 H 0.059 0.941 12 O -0.560 6.560 13 C 0.029 3.971 14 N -0.544 5.544 15 C 0.043 3.957 16 C 0.209 3.791 17 C -0.521 4.521 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.280 1.280 25 C -0.185 4.185 26 C -0.157 4.157 27 C -0.173 4.173 28 S 0.126 5.874 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.353 0.647 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.379 0.621 37 H 0.028 0.972 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.008 0.992 41 H 0.084 0.916 42 H -0.041 1.041 43 H 0.003 0.997 44 H 0.263 0.737 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.100 0.900 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -7.980 24.371 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.345 4.345 3 C -0.141 4.141 4 N -0.199 5.199 5 C -0.224 4.224 6 C 0.086 3.914 7 H 0.120 0.880 8 N -0.314 5.314 9 C -0.083 4.083 10 C 0.064 3.936 11 H 0.077 0.923 12 O -0.366 6.366 13 C -0.100 4.100 14 N -0.268 5.268 15 C -0.105 4.105 16 C 0.083 3.917 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.206 1.206 25 C -0.207 4.207 26 C -0.194 4.194 27 C -0.211 4.211 28 S 0.381 5.619 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.227 0.773 37 H 0.047 0.953 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.103 0.897 42 H -0.023 1.023 43 H 0.021 0.979 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.118 0.882 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.893 -8.049 23.402 27.038 hybrid contribution 0.419 0.568 -0.369 0.797 sum -10.473 -7.481 23.033 26.385 Atomic orbital electron populations 1.20356 0.84550 1.04632 1.03756 1.26378 1.02987 0.94346 1.10798 1.22027 0.86847 1.01190 1.04030 1.66112 1.18520 1.19691 1.15611 1.27054 1.00748 0.91489 1.03156 1.19626 0.84960 0.97168 0.89636 0.88011 1.60203 1.23848 1.06927 1.40420 1.22525 0.91538 0.96449 0.97782 1.21700 0.92430 0.85985 0.93454 0.92304 1.86669 1.65485 1.32508 1.51924 1.22783 0.97228 0.94467 0.95542 1.61938 1.04541 1.50828 1.09523 1.22205 0.91227 0.96266 1.00836 1.19392 0.92292 0.93373 0.86667 1.21507 1.08491 1.24718 1.01224 0.92129 1.25938 0.95482 0.98310 1.00200 1.70099 1.18812 1.44690 1.23994 0.85341 0.78632 0.78414 0.78281 1.18716 1.20108 1.20564 1.22925 1.06089 0.98404 0.93256 1.23143 0.96513 0.96855 1.02845 1.22966 0.96881 1.03514 0.97718 1.83685 0.98202 1.11477 1.68543 0.89931 0.89966 0.88698 0.79876 0.82612 0.90243 0.91536 0.77261 0.95337 0.88085 0.92864 0.97373 0.89712 1.02330 0.97946 0.92780 0.87947 0.87710 0.87307 0.88173 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.22 -4.28 6.60 24.64 0.16 -4.11 16 3 C 0.01 0.21 11.25 83.66 0.94 1.15 16 4 N -0.49 -13.50 10.50 -191.44 -2.01 -15.51 16 5 C 0.05 1.32 5.90 88.52 0.52 1.84 16 6 C 0.20 4.31 2.71 44.17 0.12 4.43 16 7 H 0.10 1.97 7.55 -2.39 -0.02 1.95 16 8 N -0.68 -18.25 6.20 -495.44 -3.07 -21.33 16 9 C 0.05 1.15 5.16 86.30 0.44 1.59 16 10 C 0.12 4.17 3.26 30.59 0.10 4.27 16 11 H 0.06 2.64 6.46 -2.39 -0.02 2.62 16 12 O -0.56 -18.56 12.80 -148.98 -1.91 -20.47 16 13 C 0.03 0.97 4.61 86.30 0.40 1.37 16 14 N -0.54 -23.97 4.66 -927.06 -4.32 -28.29 16 15 C 0.04 1.64 9.32 127.69 1.19 2.83 16 16 C 0.21 11.66 4.57 85.56 0.39 12.05 16 17 C -0.52 -31.02 8.58 25.60 0.22 -30.80 16 18 H 0.06 3.56 7.10 -2.92 -0.02 3.54 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 20 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 21 Si 0.97 46.27 29.54 68.60 2.03 48.30 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 C -0.19 -3.22 5.07 -10.79 -0.05 -3.28 16 26 C -0.16 -1.96 10.18 30.60 0.31 -1.65 16 27 C -0.17 -2.49 9.87 30.59 0.30 -2.18 16 28 S 0.13 2.46 23.18 -56.49 -1.31 1.15 16 29 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.35 10.08 7.89 -89.69 -0.71 9.37 16 34 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 35 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 36 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 37 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 38 H 0.10 2.59 7.82 -2.39 -0.02 2.57 16 39 H 0.05 2.21 7.02 -2.39 -0.02 2.20 16 40 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16 41 H 0.08 2.51 7.88 -2.39 -0.02 2.49 16 42 H -0.04 -2.46 8.07 -2.39 -0.02 -2.48 16 43 H 0.00 0.15 6.34 -2.39 -0.02 0.14 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 46 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 47 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.81 412.99 -4.48 -80.29 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.43 Total: 26.45 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 6.25 Total: -12.24 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -9.12 Total: -123.49 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.91 Total: -20.47 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -75.81 -4.48 -80.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572476260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.984 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds