Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33642 * 122.74752 * 2 1 4 4 S 1.76196 * 107.92203 * 179.75732 * 3 2 1 5 5 C 1.70979 * 90.28516 * 0.28223 * 4 3 2 6 6 C 1.50700 * 124.91549 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46878 * 194.69209 * 6 5 4 8 8 N 1.46893 * 109.47190 * 314.69684 * 6 5 4 9 9 C 1.46901 * 111.00024 * 205.00185 * 8 6 5 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47258 * 90.00647 * 21 19 17 23 23 H 1.48502 * 109.47121 * 210.00245 * 21 19 17 24 24 H 1.48497 * 109.47375 * 330.00253 * 21 19 17 25 25 C 1.53001 * 109.47289 * 74.69655 * 6 5 4 26 26 C 1.52999 * 117.49777 * 128.61554 * 25 6 5 27 27 C 1.52998 * 60.00371 * 252.51294 * 26 25 6 28 28 N 1.29025 * 110.16371 * 359.71126 * 5 4 3 29 29 H 1.08999 * 109.47295 * 270.02329 * 1 2 3 30 30 H 1.09000 * 109.47080 * 30.02814 * 1 2 3 31 31 H 1.09004 * 109.47008 * 150.02208 * 1 2 3 32 32 H 1.07998 * 126.03747 * 359.97438 * 3 2 1 33 33 H 1.00899 * 111.00258 * 81.05065 * 8 6 5 34 34 H 1.08995 * 109.47180 * 59.99940 * 9 8 6 35 35 H 1.09002 * 109.47373 * 300.00035 * 9 8 6 36 36 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 37 37 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 38 38 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 39 39 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 40 40 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 41 41 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 42 42 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 43 43 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 44 44 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 45 45 H 1.08992 * 115.55132 * 274.32976 * 25 6 5 46 46 H 1.09000 * 117.50123 * 0.02562 * 26 25 6 47 47 H 1.09009 * 117.49401 * 145.02183 * 26 25 6 48 48 H 1.09003 * 117.50064 * 252.51524 * 27 26 25 49 49 H 1.09003 * 117.51599 * 107.47944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0071 5 6 3.5039 -0.9818 0.0009 6 6 4.4835 -2.1270 0.0023 7 1 3.9655 -3.0486 -0.2630 8 7 5.5464 -1.8634 -0.9768 9 6 6.1550 -3.1163 -1.4434 10 6 7.2552 -2.8018 -2.4589 11 1 8.0175 -2.1808 -1.9882 12 8 6.6915 -2.1031 -3.5708 13 6 7.8895 -4.1067 -2.9444 14 7 8.9803 -3.8025 -3.8803 15 6 9.3002 -4.9696 -4.7130 16 6 10.1704 -3.3246 -3.1641 17 6 11.1736 -2.7936 -4.1554 18 1 10.9494 -2.8091 -5.2116 19 6 12.3775 -2.2868 -3.7136 20 7 12.6504 -2.2674 -2.4272 21 14 13.6207 -1.6280 -4.9423 22 1 13.3768 -0.1803 -5.1654 23 1 14.9934 -1.8224 -4.4102 24 1 13.4803 -2.3575 -6.2281 25 6 5.0983 -2.2707 1.3960 26 6 5.0673 -3.6572 2.0422 27 6 4.1478 -2.5503 2.5619 28 7 2.2199 -1.1083 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.8391 2.1308 -0.0004 33 1 6.2442 -1.2428 -0.5948 34 1 5.3927 -3.7374 -1.9137 35 1 6.5853 -3.6491 -0.5954 36 1 6.0044 -2.5973 -4.0385 37 1 7.1359 -4.7113 -3.4489 38 1 8.2857 -4.6575 -2.0913 39 1 9.7577 -5.7423 -4.0952 40 1 8.3857 -5.3575 -5.1617 41 1 9.9945 -4.6751 -5.4999 42 1 9.8850 -2.5300 -2.4748 43 1 10.6134 -4.1489 -2.6049 44 1 13.4975 -1.9113 -2.1166 45 1 5.9663 -1.6420 1.5940 46 1 4.6094 -4.4671 1.4743 47 1 5.9154 -3.9409 2.6655 48 1 4.3909 -2.1058 3.5271 49 1 3.0845 -2.6315 2.3361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575053415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = 1.578556 kcal Electronic energy + Delta-G solvation = -27127.686889 eV Core-core repulsion = 23409.431520 eV Total energy + Delta-G solvation = -3718.255369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96194 -39.71382 -38.83515 -37.12736 -35.54510 -34.58860 -33.09394 -31.22020 -29.42127 -28.74665 -28.25805 -26.37238 -24.99129 -24.03615 -23.30381 -22.88343 -21.87662 -21.50379 -20.51191 -18.59704 -18.58030 -17.61937 -17.23323 -16.85885 -16.54637 -16.44313 -16.01322 -15.92950 -15.57688 -15.37817 -15.01929 -14.76075 -14.64196 -14.38579 -14.01341 -13.90392 -13.66897 -13.41982 -13.26525 -13.14090 -13.01272 -12.88949 -12.54656 -12.54272 -12.48813 -12.43158 -12.32288 -12.14341 -12.10374 -11.53054 -11.49524 -11.31393 -11.27721 -10.72759 -10.59428 -10.54394 -10.30973 -9.58869 -9.47727 -8.92043 -8.19774 -6.28478 -0.18776 0.51266 0.92564 1.40336 1.42479 1.52853 1.82284 2.40817 2.56104 2.76043 3.12734 3.28645 3.53702 3.62993 3.77190 3.89279 3.93935 3.99921 4.09641 4.19307 4.25565 4.32906 4.37038 4.41392 4.48619 4.52320 4.59736 4.63964 4.71506 4.77087 4.79457 4.80519 4.87673 4.93414 4.99788 5.08581 5.09585 5.13219 5.18227 5.25317 5.32451 5.39564 5.66318 5.84682 6.08281 6.18158 6.36614 6.67663 6.82909 6.87345 7.14601 7.40719 8.91223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.002352 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.196609 B =11903.532112 C =12193.437213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.047 3.953 3 C -0.274 4.274 4 S 0.138 5.862 5 C 0.069 3.931 6 C 0.200 3.800 7 H 0.103 0.897 8 N -0.674 5.674 9 C 0.047 3.953 10 C 0.127 3.873 11 H 0.062 0.938 12 O -0.552 6.552 13 C 0.027 3.973 14 N -0.544 5.544 15 C 0.043 3.957 16 C 0.211 3.789 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.196 4.196 26 C -0.159 4.159 27 C -0.165 4.165 28 N -0.497 5.497 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.198 0.802 33 H 0.344 0.656 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.008 0.992 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.005 0.995 43 H -0.040 1.040 44 H 0.264 0.736 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.018 0.989 9.280 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.413 4.413 4 S 0.394 5.606 5 C -0.209 4.209 6 C 0.087 3.913 7 H 0.121 0.879 8 N -0.305 5.305 9 C -0.083 4.083 10 C 0.067 3.933 11 H 0.080 0.920 12 O -0.357 6.357 13 C -0.102 4.102 14 N -0.267 5.267 15 C -0.105 4.105 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.206 1.206 24 H -0.189 1.189 25 C -0.217 4.217 26 C -0.196 4.196 27 C -0.203 4.203 28 N -0.213 5.213 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.215 0.785 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.023 0.977 43 H -0.023 1.023 44 H 0.072 0.928 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.305 1.933 8.713 24.955 hybrid contribution 0.661 -0.843 0.870 1.380 sum -22.644 1.090 9.583 24.613 Atomic orbital electron populations 1.20410 0.85348 1.03948 1.03615 1.20742 0.99494 0.86408 1.01882 1.27162 0.95013 1.04933 1.14213 1.84119 1.07547 1.02481 1.66467 1.26884 0.93704 0.98463 1.01890 1.19442 0.89442 0.93397 0.89036 0.87867 1.60355 1.15382 1.15225 1.39525 1.22537 0.96923 0.91001 0.97821 1.21646 0.92952 0.92324 0.86384 0.91971 1.86639 1.57808 1.46041 1.45219 1.22795 0.94924 0.97097 0.95426 1.61917 1.08372 1.32685 1.23766 1.22205 1.00846 0.90496 0.96983 1.19384 0.86822 0.92662 0.92710 1.21481 1.00701 1.39833 0.94003 0.92279 1.25887 1.00366 0.96267 0.97183 1.70072 1.24740 1.47570 1.15067 0.85426 0.77665 0.78775 0.79026 1.20047 1.20620 1.18906 1.23080 1.02520 1.02327 0.93738 1.23084 1.02430 0.91080 1.03050 1.22882 0.96790 1.03083 0.97510 1.66088 1.04745 1.32791 1.17680 0.89782 0.88960 0.91166 0.78495 0.83672 0.88891 0.93029 0.77559 0.88597 0.95229 0.97375 0.89931 0.92896 0.97662 1.02279 0.92754 0.87335 0.87982 0.87728 0.87973 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.31 71.23 0.73 -0.25 16 2 C 0.05 0.95 6.74 41.52 0.28 1.23 16 3 C -0.27 -5.05 11.13 66.78 0.74 -4.31 16 4 S 0.14 2.93 22.97 -56.49 -1.30 1.63 16 5 C 0.07 1.58 5.96 88.52 0.53 2.11 16 6 C 0.20 4.18 2.72 44.17 0.12 4.30 16 7 H 0.10 2.19 7.56 -2.39 -0.02 2.17 16 8 N -0.67 -15.72 5.91 -495.47 -2.93 -18.65 16 9 C 0.05 1.07 5.15 86.30 0.44 1.51 16 10 C 0.13 3.99 3.25 30.59 0.10 4.09 16 11 H 0.06 2.43 6.73 -2.39 -0.02 2.42 16 12 O -0.55 -18.43 13.11 -148.98 -1.95 -20.38 16 13 C 0.03 0.87 4.65 86.30 0.40 1.28 16 14 N -0.54 -23.33 4.59 -927.06 -4.25 -27.58 16 15 C 0.04 1.63 9.31 127.69 1.19 2.82 16 16 C 0.21 11.32 4.55 85.56 0.39 11.71 16 17 C -0.52 -30.28 8.58 25.60 0.22 -30.06 16 18 H 0.06 3.40 7.10 -2.91 -0.02 3.38 16 19 C 0.00 0.04 5.46 84.66 0.46 0.51 16 20 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 25 C -0.20 -3.59 5.07 -10.79 -0.05 -3.64 16 26 C -0.16 -2.53 10.18 30.59 0.31 -2.22 16 27 C -0.16 -2.77 9.87 30.60 0.30 -2.47 16 28 N -0.50 -11.95 10.53 -179.41 -1.89 -13.84 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.34 8.47 8.34 -89.70 -0.75 7.72 16 34 H 0.09 1.81 8.05 -2.39 -0.02 1.79 16 35 H 0.05 1.12 8.01 -2.39 -0.02 1.10 16 36 H 0.38 9.53 9.05 -74.06 -0.67 8.86 16 37 H 0.10 2.48 7.75 -2.39 -0.02 2.46 16 38 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 39 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 40 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 41 H 0.05 2.18 7.01 -2.39 -0.02 2.17 16 42 H 0.01 0.31 6.60 -2.39 -0.02 0.29 16 43 H -0.04 -2.35 8.07 -2.38 -0.02 -2.37 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.11 2.05 7.92 -2.39 -0.02 2.03 16 46 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 47 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.87 413.54 -4.31 -75.18 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.47 Total: 26.24 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 6.17 Total: -13.41 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -8.79 Total: -116.50 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.95 Total: -20.38 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.30 Total: 1.63 kcal Total: -70.87 -4.31 -75.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575053415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.758 kcal (2) G-P(sol) polarization free energy of solvation -70.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds