Wall clock time and date at job start Tue Mar 31 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33638 * 122.75204 * 2 1 4 4 S 1.76197 * 107.92601 * 179.97438 * 3 2 1 5 5 C 1.70975 * 90.28500 * 0.02562 * 4 3 2 6 6 C 1.50702 * 124.92161 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47352 * 165.02191 * 6 5 4 8 8 N 1.46902 * 109.46651 * 45.01795 * 6 5 4 9 9 C 1.46904 * 110.99534 * 155.00501 * 8 6 5 10 10 C 1.53000 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47253 * 305.00344 * 10 9 8 12 12 O 1.42900 * 109.47194 * 64.99751 * 10 9 8 13 13 C 1.52998 * 109.47107 * 184.99848 * 10 9 8 14 14 N 1.46899 * 109.46858 * 175.04575 * 13 10 9 15 15 C 1.46903 * 110.99991 * 163.94840 * 14 13 10 16 16 C 1.46902 * 111.00138 * 287.89426 * 14 13 10 17 17 C 1.50702 * 109.47206 * 170.00004 * 16 14 13 18 18 H 1.07990 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99588 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99737 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46844 * 90.00277 * 21 19 17 23 23 H 1.48497 * 109.47088 * 210.00471 * 21 19 17 24 24 H 1.48503 * 109.46723 * 330.00198 * 21 19 17 25 25 C 1.52998 * 109.46798 * 285.02199 * 6 5 4 26 26 C 1.52998 * 117.50290 * 8.62350 * 25 6 5 27 27 C 1.52994 * 117.50151 * 299.99937 * 25 6 5 28 28 N 1.29034 * 110.16484 * 0.23885 * 5 4 3 29 29 H 1.09003 * 109.46685 * 89.97578 * 1 2 3 30 30 H 1.08996 * 109.47130 * 209.97284 * 1 2 3 31 31 H 1.08999 * 109.47603 * 329.97816 * 1 2 3 32 32 H 1.07992 * 126.03496 * 359.96467 * 3 2 1 33 33 H 1.00898 * 111.00033 * 278.95340 * 8 6 5 34 34 H 1.08996 * 109.47355 * 59.99871 * 9 8 6 35 35 H 1.09001 * 109.46826 * 299.99768 * 9 8 6 36 36 H 0.96698 * 114.00266 * 60.00042 * 12 10 9 37 37 H 1.08997 * 109.47560 * 55.04389 * 13 10 9 38 38 H 1.08998 * 109.46907 * 295.04026 * 13 10 9 39 39 H 1.08998 * 109.47439 * 189.27288 * 15 14 13 40 40 H 1.08994 * 109.47470 * 69.26701 * 15 14 13 41 41 H 1.09004 * 109.46549 * 309.26905 * 15 14 13 42 42 H 1.08997 * 109.47475 * 290.00611 * 16 14 13 43 43 H 1.09000 * 109.46537 * 50.00068 * 16 14 13 44 44 H 0.97003 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09003 * 115.54949 * 154.32612 * 25 6 5 46 46 H 1.09008 * 117.49599 * 359.97438 * 26 25 6 47 47 H 1.08998 * 117.50767 * 145.01958 * 26 25 6 48 48 H 1.09007 * 117.49593 * 214.98258 * 27 25 6 49 49 H 1.09001 * 117.49972 * 359.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6731 0.0007 5 6 3.5040 -0.9819 0.0002 6 6 4.4834 -2.1272 -0.0001 7 1 3.9652 -3.0486 0.2652 8 7 5.5457 -1.8632 0.9798 9 6 6.1539 -3.1161 1.4471 10 6 7.2526 -2.8013 2.4642 11 1 7.9690 -2.1086 2.0226 12 8 6.6701 -2.2074 3.6261 13 6 7.9694 -4.0946 2.8574 14 7 9.0992 -3.7788 3.7415 15 6 9.5738 -4.9814 4.4392 16 6 10.1900 -3.1391 2.9940 17 6 11.2187 -2.6106 3.9601 18 1 11.0766 -2.7376 5.0231 19 6 12.3418 -1.9658 3.4868 20 7 12.5150 -1.8116 2.1923 21 14 13.6173 -1.3112 4.6844 22 1 14.6344 -2.3608 4.9468 23 1 14.2781 -0.1167 4.0998 24 1 12.9532 -0.9357 5.9585 25 6 5.0991 -2.2713 -1.3933 26 6 4.7987 -1.1733 -2.4155 27 6 4.1495 -2.5512 -2.5598 28 7 2.2199 -1.1084 -0.0055 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 1.8392 2.1307 -0.0005 33 1 6.2437 -1.2428 0.5979 34 1 6.5848 -3.6491 0.5995 35 1 5.3912 -3.7370 1.9171 36 1 6.0213 -2.7691 4.0717 37 1 8.3379 -4.5928 1.9607 38 1 7.2732 -4.7519 3.3782 39 1 10.2954 -4.6964 5.2047 40 1 10.0489 -5.6527 3.7239 41 1 8.7290 -5.4874 4.9066 42 1 10.6547 -3.8701 2.3323 43 1 9.7905 -2.3156 2.4020 44 1 13.3049 -1.3576 1.8593 45 1 6.0859 -2.7331 -1.4257 46 1 4.1620 -0.3484 -2.0955 47 1 5.5878 -0.9124 -3.1206 48 1 4.5118 -3.1969 -3.3598 49 1 3.0862 -2.6331 -2.3346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575053418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:01 Heat of formation + Delta-G solvation = 30.540828 kcal Electronic energy + Delta-G solvation = -27238.450022 eV Core-core repulsion = 23521.450551 eV Total energy + Delta-G solvation = -3716.999470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31023 -38.64562 -37.70972 -35.67548 -34.53593 -32.47697 -32.23528 -30.00465 -27.99303 -27.47673 -27.10354 -24.94414 -23.81522 -23.28495 -22.60689 -21.61734 -20.56583 -20.00170 -19.69587 -17.75037 -16.88225 -16.52307 -16.20494 -15.70266 -15.26542 -15.06333 -14.73470 -14.64163 -14.60964 -14.26547 -13.91776 -13.66475 -13.35221 -13.18808 -12.79930 -12.77475 -12.68418 -12.34967 -12.19109 -11.97274 -11.84237 -11.73282 -11.38384 -11.38136 -11.13740 -10.93769 -10.74975 -10.66914 -10.65589 -10.41982 -10.34275 -9.78625 -9.73670 -9.54261 -9.46632 -9.12493 -8.71512 -8.57042 -8.40856 -7.19482 -6.01027 -4.01076 0.58027 1.27356 1.69754 2.60546 3.30629 3.33662 3.39832 3.45335 3.73132 4.15044 4.37433 4.45209 4.60775 4.73498 4.76373 4.80810 4.89790 4.95454 5.05704 5.20366 5.23926 5.31768 5.34388 5.34882 5.41289 5.45047 5.47080 5.57666 5.63176 5.65631 5.69021 5.73972 5.83957 5.88990 6.03831 6.06348 6.09298 6.35088 6.48421 6.71172 6.76064 7.15645 7.27375 7.31417 7.61380 7.82167 8.09248 8.17860 8.26225 8.57192 9.06198 9.62838 11.10130 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002376 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.698712 B =11784.116663 C =12001.654173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 C -0.280 4.280 4 S 0.158 5.842 5 C 0.076 3.924 6 C 0.191 3.809 7 H 0.109 0.891 8 N -0.668 5.668 9 C 0.030 3.970 10 C 0.118 3.882 11 H 0.103 0.897 12 O -0.532 6.532 13 C 0.027 3.973 14 N -0.531 5.531 15 C 0.041 3.959 16 C 0.192 3.808 17 C -0.503 4.503 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.897 3.103 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.272 1.272 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.167 4.167 28 N -0.475 5.475 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.174 0.826 33 H 0.350 0.650 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.361 0.639 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.042 0.958 42 H -0.012 1.012 43 H 0.031 0.969 44 H 0.260 0.740 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.375 0.774 -9.263 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.419 4.419 4 S 0.414 5.586 5 C -0.203 4.203 6 C 0.077 3.923 7 H 0.127 0.873 8 N -0.299 5.299 9 C -0.099 4.099 10 C 0.057 3.943 11 H 0.121 0.879 12 O -0.334 6.334 13 C -0.103 4.103 14 N -0.256 5.256 15 C -0.107 4.107 16 C 0.067 3.933 17 C -0.541 4.541 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.725 3.275 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.208 4.208 26 C -0.223 4.223 27 C -0.204 4.204 28 N -0.190 5.190 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.191 0.809 33 H 0.169 0.831 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.206 0.794 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.006 0.994 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.688 1.767 -8.632 23.410 hybrid contribution 0.387 -0.904 -0.813 1.275 sum -21.301 0.863 -9.445 23.317 Atomic orbital electron populations 1.20328 0.87341 1.03254 1.02703 1.20232 0.98091 0.86558 1.01879 1.26888 0.96116 1.03926 1.15005 1.84193 1.06092 1.02408 1.65882 1.26784 0.93640 0.98163 1.01726 1.19519 0.90041 0.93779 0.88933 0.87322 1.60383 1.15481 1.15360 1.38695 1.22783 0.97827 0.90744 0.98571 1.21892 0.92022 0.95282 0.85070 0.87886 1.86696 1.60064 1.45165 1.41488 1.22679 0.95364 0.96143 0.96138 1.62040 1.09211 1.24570 1.29745 1.22185 0.98881 0.91142 0.98534 1.19786 0.87222 0.93377 0.92877 1.21152 1.03605 1.35817 0.93565 0.91886 1.24980 0.98252 0.96248 0.95199 1.69950 1.28462 1.43497 1.12179 0.86504 0.81333 0.78375 0.81276 1.20831 1.21265 1.19712 1.23150 1.01144 1.05520 0.91026 1.23341 1.03938 0.92868 1.02114 1.22905 0.98906 0.99026 0.99598 1.66078 1.04358 1.31711 1.16870 0.90869 0.90672 0.90853 0.80898 0.83081 0.93951 0.90550 0.79408 0.95277 0.92018 0.90951 0.97042 0.93902 0.99437 0.95094 0.93006 0.86447 0.88489 0.88316 0.88584 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.31 36.00 0.37 -0.21 16 2 C 0.07 0.70 6.74 -84.23 -0.57 0.13 16 3 C -0.28 -2.75 11.13 29.12 0.32 -2.42 16 4 S 0.16 1.70 20.85 -107.50 -2.24 -0.54 16 5 C 0.08 0.89 4.78 -13.45 -0.06 0.82 16 6 C 0.19 2.09 2.89 -68.86 -0.20 1.89 16 7 H 0.11 1.22 7.80 -51.93 -0.40 0.82 16 8 N -0.67 -8.05 5.99 -107.95 -0.65 -8.70 16 9 C 0.03 0.37 5.12 -3.82 -0.02 0.35 16 10 C 0.12 1.86 3.20 -26.73 -0.09 1.77 16 11 H 0.10 1.94 6.46 -51.93 -0.34 1.61 16 12 O -0.53 -9.03 13.23 -35.23 -0.47 -9.50 16 13 C 0.03 0.45 4.61 -3.83 -0.02 0.43 16 14 N -0.53 -11.40 4.66 -244.37 -1.14 -12.54 16 15 C 0.04 0.80 9.32 60.07 0.56 1.36 16 16 C 0.19 4.99 4.57 -4.97 -0.02 4.97 16 17 C -0.50 -14.28 8.58 -34.44 -0.30 -14.57 16 18 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.19 -1.83 5.59 -90.62 -0.51 -2.33 16 26 C -0.19 -1.75 9.49 -26.73 -0.25 -2.00 16 27 C -0.17 -1.52 10.02 -26.74 -0.27 -1.79 16 28 N -0.47 -5.86 10.53 -8.06 -0.08 -5.94 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.35 4.34 8.48 -39.29 -0.33 4.00 16 34 H 0.04 0.48 7.63 -51.93 -0.40 0.08 16 35 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.36 4.78 9.05 45.56 0.41 5.20 16 37 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 39 H 0.07 1.50 7.02 -51.93 -0.36 1.13 16 40 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 41 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 42 H -0.01 -0.34 8.07 -51.93 -0.42 -0.75 16 43 H 0.03 0.85 6.34 -51.93 -0.33 0.52 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 1.14 7.71 -51.93 -0.40 0.74 16 46 H 0.10 0.98 4.89 -49.48 -0.24 0.74 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 49 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -32.39 406.81 -11.22 -43.61 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.35 Total: 6.80 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.14 Total: -10.16 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -1.13 Total: -53.21 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.47 Total: -9.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.24 Total: -0.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.39 -11.22 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575053418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.151 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds