Wall clock time and date at job start Tue Mar 31 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33638 * 122.75204 * 2 1 4 4 S 1.76197 * 107.92601 * 179.97438 * 3 2 1 5 5 C 1.70975 * 90.28500 * 0.02562 * 4 3 2 6 6 C 1.50702 * 124.92161 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47352 * 165.02191 * 6 5 4 8 8 N 1.46902 * 109.46651 * 45.01795 * 6 5 4 9 9 C 1.46904 * 110.99534 * 155.00501 * 8 6 5 10 10 C 1.53000 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47253 * 305.00344 * 10 9 8 12 12 O 1.42900 * 109.47194 * 64.99751 * 10 9 8 13 13 C 1.52998 * 109.47107 * 184.99848 * 10 9 8 14 14 N 1.46899 * 109.46858 * 175.04575 * 13 10 9 15 15 C 1.46903 * 110.99991 * 163.94840 * 14 13 10 16 16 C 1.46902 * 111.00138 * 287.89426 * 14 13 10 17 17 C 1.50702 * 109.47206 * 170.00004 * 16 14 13 18 18 H 1.07990 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99588 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99737 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46844 * 90.00277 * 21 19 17 23 23 H 1.48497 * 109.47088 * 210.00471 * 21 19 17 24 24 H 1.48503 * 109.46723 * 330.00198 * 21 19 17 25 25 C 1.52998 * 109.46798 * 285.02199 * 6 5 4 26 26 C 1.52998 * 117.50290 * 8.62350 * 25 6 5 27 27 C 1.52994 * 117.50151 * 299.99937 * 25 6 5 28 28 N 1.29034 * 110.16484 * 0.23885 * 5 4 3 29 29 H 1.09003 * 109.46685 * 89.97578 * 1 2 3 30 30 H 1.08996 * 109.47130 * 209.97284 * 1 2 3 31 31 H 1.08999 * 109.47603 * 329.97816 * 1 2 3 32 32 H 1.07992 * 126.03496 * 359.96467 * 3 2 1 33 33 H 1.00898 * 111.00033 * 278.95340 * 8 6 5 34 34 H 1.08996 * 109.47355 * 59.99871 * 9 8 6 35 35 H 1.09001 * 109.46826 * 299.99768 * 9 8 6 36 36 H 0.96698 * 114.00266 * 60.00042 * 12 10 9 37 37 H 1.08997 * 109.47560 * 55.04389 * 13 10 9 38 38 H 1.08998 * 109.46907 * 295.04026 * 13 10 9 39 39 H 1.08998 * 109.47439 * 189.27288 * 15 14 13 40 40 H 1.08994 * 109.47470 * 69.26701 * 15 14 13 41 41 H 1.09004 * 109.46549 * 309.26905 * 15 14 13 42 42 H 1.08997 * 109.47475 * 290.00611 * 16 14 13 43 43 H 1.09000 * 109.46537 * 50.00068 * 16 14 13 44 44 H 0.97003 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09003 * 115.54949 * 154.32612 * 25 6 5 46 46 H 1.09008 * 117.49599 * 359.97438 * 26 25 6 47 47 H 1.08998 * 117.50767 * 145.01958 * 26 25 6 48 48 H 1.09007 * 117.49593 * 214.98258 * 27 25 6 49 49 H 1.09001 * 117.49972 * 359.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6731 0.0007 5 6 3.5040 -0.9819 0.0002 6 6 4.4834 -2.1272 -0.0001 7 1 3.9652 -3.0486 0.2652 8 7 5.5457 -1.8632 0.9798 9 6 6.1539 -3.1161 1.4471 10 6 7.2526 -2.8013 2.4642 11 1 7.9690 -2.1086 2.0226 12 8 6.6701 -2.2074 3.6261 13 6 7.9694 -4.0946 2.8574 14 7 9.0992 -3.7788 3.7415 15 6 9.5738 -4.9814 4.4392 16 6 10.1900 -3.1391 2.9940 17 6 11.2187 -2.6106 3.9601 18 1 11.0766 -2.7376 5.0231 19 6 12.3418 -1.9658 3.4868 20 7 12.5150 -1.8116 2.1923 21 14 13.6173 -1.3112 4.6844 22 1 14.6344 -2.3608 4.9468 23 1 14.2781 -0.1167 4.0998 24 1 12.9532 -0.9357 5.9585 25 6 5.0991 -2.2713 -1.3933 26 6 4.7987 -1.1733 -2.4155 27 6 4.1495 -2.5512 -2.5598 28 7 2.2199 -1.1084 -0.0055 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 1.8392 2.1307 -0.0005 33 1 6.2437 -1.2428 0.5979 34 1 6.5848 -3.6491 0.5995 35 1 5.3912 -3.7370 1.9171 36 1 6.0213 -2.7691 4.0717 37 1 8.3379 -4.5928 1.9607 38 1 7.2732 -4.7519 3.3782 39 1 10.2954 -4.6964 5.2047 40 1 10.0489 -5.6527 3.7239 41 1 8.7290 -5.4874 4.9066 42 1 10.6547 -3.8701 2.3323 43 1 9.7905 -2.3156 2.4020 44 1 13.3049 -1.3576 1.8593 45 1 6.0859 -2.7331 -1.4257 46 1 4.1620 -0.3484 -2.0955 47 1 5.5878 -0.9124 -3.1206 48 1 4.5118 -3.1969 -3.3598 49 1 3.0862 -2.6331 -2.3346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575053418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:00 Heat of formation + Delta-G solvation = 5.734493 kcal Electronic energy + Delta-G solvation = -27239.525705 eV Core-core repulsion = 23521.450551 eV Total energy + Delta-G solvation = -3718.075154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12795 -39.70581 -38.85968 -37.15388 -35.57553 -34.59189 -33.03256 -31.21284 -29.41593 -28.72058 -28.23826 -26.34420 -25.01938 -24.54602 -23.39658 -22.89589 -21.74058 -21.27991 -20.51165 -18.59452 -18.59340 -17.79264 -17.35027 -16.89537 -16.51312 -16.39720 -16.06980 -15.91272 -15.53913 -15.43031 -14.99489 -14.97148 -14.68623 -14.34700 -14.00041 -13.90603 -13.51557 -13.36920 -13.24485 -13.17716 -13.06376 -12.88307 -12.75818 -12.58622 -12.51896 -12.46578 -12.31737 -12.17144 -12.12637 -11.52208 -11.46093 -11.30102 -11.18765 -10.74532 -10.60787 -10.58944 -10.29934 -9.52075 -9.49616 -8.92801 -8.19740 -6.28378 -0.23348 0.46855 0.89169 1.40096 1.41928 1.53571 1.79310 2.40744 2.48377 2.90924 3.12653 3.19934 3.46818 3.57912 3.74445 3.85803 3.96227 3.99101 4.02603 4.19853 4.29779 4.33857 4.35800 4.39067 4.48348 4.50989 4.60781 4.63215 4.68270 4.74947 4.78599 4.79779 4.85293 4.91093 4.96849 5.08259 5.08761 5.12940 5.16165 5.25514 5.32498 5.38117 5.66203 5.83122 6.08205 6.16867 6.36209 6.67387 6.79601 6.87261 7.13419 7.40790 8.91237 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002376 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.698712 B =11784.116663 C =12001.654173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 C -0.274 4.274 4 S 0.145 5.855 5 C 0.064 3.936 6 C 0.197 3.803 7 H 0.107 0.893 8 N -0.676 5.676 9 C 0.045 3.955 10 C 0.126 3.874 11 H 0.064 0.936 12 O -0.554 6.554 13 C 0.027 3.973 14 N -0.545 5.545 15 C 0.043 3.957 16 C 0.209 3.791 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.268 1.268 25 C -0.189 4.189 26 C -0.187 4.187 27 C -0.158 4.158 28 N -0.493 5.493 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.199 0.801 33 H 0.345 0.655 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.378 0.622 37 H 0.030 0.970 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.008 0.992 41 H 0.082 0.918 42 H -0.041 1.041 43 H 0.008 0.992 44 H 0.264 0.736 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.110 0.890 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 0.546 -8.816 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.413 4.413 4 S 0.401 5.599 5 C -0.215 4.215 6 C 0.084 3.916 7 H 0.125 0.875 8 N -0.306 5.306 9 C -0.085 4.085 10 C 0.066 3.934 11 H 0.082 0.918 12 O -0.359 6.359 13 C -0.102 4.102 14 N -0.269 5.269 15 C -0.106 4.106 16 C 0.083 3.917 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.192 1.192 25 C -0.210 4.210 26 C -0.225 4.225 27 C -0.195 4.195 28 N -0.209 5.209 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.216 0.784 33 H 0.164 0.836 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.225 0.775 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.101 0.899 42 H -0.023 1.023 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.137 0.863 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.128 0.872 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.992 1.514 -8.178 24.450 hybrid contribution 0.697 -0.825 -0.949 1.438 sum -22.296 0.688 -9.127 24.101 Atomic orbital electron populations 1.20414 0.85293 1.03987 1.03649 1.20752 0.99534 0.86364 1.01951 1.27211 0.95152 1.05012 1.13972 1.84216 1.07387 1.02299 1.66027 1.26872 0.93740 0.98572 1.02270 1.19446 0.89480 0.93510 0.89199 0.87507 1.60358 1.15553 1.15307 1.39428 1.22589 0.97022 0.90992 0.97859 1.21673 0.92457 0.93670 0.85623 0.91812 1.86647 1.60783 1.46324 1.42168 1.22802 0.94268 0.97279 0.95874 1.61936 1.08740 1.25970 1.30216 1.22200 1.00099 0.90391 0.97869 1.19399 0.88006 0.92194 0.92085 1.21476 1.04656 1.36188 0.93732 0.92313 1.25877 1.00408 0.96390 0.96984 1.70069 1.29235 1.44123 1.13986 0.85434 0.78635 0.77946 0.78936 1.19695 1.20667 1.19203 1.23079 1.01281 1.06022 0.90658 1.23359 1.04130 0.92845 1.02139 1.22906 0.98306 0.98893 0.99441 1.66109 1.04682 1.32795 1.17306 0.89762 0.91130 0.88921 0.78378 0.83629 0.93012 0.88620 0.77459 0.95213 0.88481 0.92843 0.97367 0.89938 1.02303 0.97431 0.92748 0.86342 0.89150 0.87564 0.87210 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.31 71.23 0.73 -0.25 16 2 C 0.05 0.93 6.74 41.52 0.28 1.21 16 3 C -0.27 -5.03 11.13 66.78 0.74 -4.28 16 4 S 0.14 3.07 20.85 -56.49 -1.18 1.90 16 5 C 0.06 1.47 4.78 88.52 0.42 1.90 16 6 C 0.20 4.21 2.89 44.17 0.13 4.34 16 7 H 0.11 2.30 7.80 -2.39 -0.02 2.28 16 8 N -0.68 -16.12 5.99 -495.45 -2.97 -19.09 16 9 C 0.04 1.03 5.12 86.30 0.44 1.48 16 10 C 0.13 3.98 3.20 30.59 0.10 4.07 16 11 H 0.06 2.53 6.46 -2.39 -0.02 2.51 16 12 O -0.55 -18.53 13.23 -148.98 -1.97 -20.50 16 13 C 0.03 0.88 4.61 86.30 0.40 1.27 16 14 N -0.54 -23.36 4.66 -927.06 -4.32 -27.68 16 15 C 0.04 1.61 9.32 127.69 1.19 2.80 16 16 C 0.21 11.23 4.57 85.56 0.39 11.62 16 17 C -0.52 -30.28 8.58 25.60 0.22 -30.06 16 18 H 0.06 3.38 7.10 -2.92 -0.02 3.36 16 19 C 0.00 0.07 5.46 84.66 0.46 0.53 16 20 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 21 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.19 -3.58 5.59 -10.80 -0.06 -3.64 16 26 C -0.19 -3.44 9.49 30.59 0.29 -3.15 16 27 C -0.16 -2.72 10.02 30.59 0.31 -2.42 16 28 N -0.49 -11.85 10.53 -179.40 -1.89 -13.74 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.34 8.77 8.48 -89.70 -0.76 8.01 16 34 H 0.05 1.11 7.63 -2.39 -0.02 1.09 16 35 H 0.10 1.86 8.06 -2.39 -0.02 1.84 16 36 H 0.38 9.39 9.05 -74.06 -0.67 8.72 16 37 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 38 H 0.10 2.50 7.82 -2.39 -0.02 2.48 16 39 H 0.05 2.19 7.02 -2.39 -0.02 2.18 16 40 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16 41 H 0.08 2.44 7.88 -2.39 -0.02 2.43 16 42 H -0.04 -2.36 8.07 -2.39 -0.02 -2.37 16 43 H 0.01 0.44 6.34 -2.39 -0.02 0.43 16 44 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.12 2.22 7.71 -2.39 -0.02 2.20 16 46 H 0.09 1.80 4.89 -3.94 -0.02 1.79 16 47 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -70.89 406.81 -4.44 -75.33 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.48 Total: 27.48 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.05 Total: -14.59 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -8.89 Total: -116.80 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.97 Total: -20.50 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.18 Total: 1.90 kcal Total: -70.89 -4.44 -75.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575053418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.064 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds