Wall clock time and date at job start Tue Mar 31 2020 23:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47190 * 305.51800 * 3 2 1 5 5 C 1.50706 * 109.47100 * 185.52199 * 3 2 1 6 6 H 1.08002 * 119.99914 * 275.05098 * 5 3 2 7 7 C 1.37879 * 120.00026 * 94.77456 * 5 3 2 8 8 N 1.31507 * 119.99908 * 186.47924 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 6.47706 * 7 5 3 10 10 H 1.48499 * 109.46889 * 86.58165 * 9 7 5 11 11 H 1.48498 * 109.46795 * 206.58360 * 9 7 5 12 12 H 1.48500 * 109.47219 * 326.58390 * 9 7 5 13 13 N 1.46895 * 109.47096 * 65.52103 * 3 2 1 14 14 C 1.46902 * 111.00030 * 248.43513 * 13 3 2 15 15 C 1.53005 * 109.47149 * 183.01130 * 14 13 3 16 16 H 1.08998 * 109.46900 * 304.99534 * 15 14 13 17 17 O 1.42897 * 109.47111 * 64.99704 * 15 14 13 18 18 C 1.52996 * 109.47101 * 184.99771 * 15 14 13 19 19 O 1.42892 * 109.47221 * 174.99449 * 18 15 14 20 20 C 1.36098 * 117.00186 * 179.97438 * 19 18 15 21 21 C 1.38982 * 120.08713 * 269.72928 * 20 19 18 22 22 O 1.35990 * 120.04633 * 359.97438 * 21 20 19 23 23 C 1.42900 * 116.99994 * 179.97438 * 22 21 20 24 24 C 1.38667 * 119.90410 * 179.71833 * 21 20 19 25 25 C 1.38234 * 120.09048 * 0.55951 * 24 21 20 26 26 C 1.38228 * 120.18106 * 359.71537 * 25 24 21 27 27 C 1.38668 * 120.08323 * 0.02562 * 26 25 24 28 28 O 1.35997 * 120.04053 * 180.02562 * 27 26 25 29 29 C 1.42906 * 117.00171 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47440 * 176.29136 * 1 2 3 31 31 H 1.09001 * 109.47271 * 296.29460 * 1 2 3 32 32 H 1.09006 * 109.47307 * 56.29044 * 1 2 3 33 33 H 1.08995 * 109.47357 * 239.99820 * 2 1 3 34 34 H 1.09003 * 109.47522 * 120.00046 * 2 1 3 35 35 H 0.97004 * 120.00222 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99920 * 124.47652 * 13 3 2 37 37 H 1.09000 * 109.46844 * 303.00489 * 14 13 3 38 38 H 1.08995 * 109.46960 * 63.00759 * 14 13 3 39 39 H 0.96697 * 114.00185 * 59.99963 * 17 15 14 40 40 H 1.08997 * 109.47115 * 295.00271 * 18 15 14 41 41 H 1.09004 * 109.46693 * 54.99665 * 18 15 14 42 42 H 1.08997 * 109.47157 * 59.99568 * 23 22 21 43 43 H 1.09002 * 109.47235 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.47313 * 300.00039 * 23 22 21 45 45 H 1.08004 * 119.95095 * 180.25133 * 24 21 20 46 46 H 1.08005 * 119.90565 * 179.74539 * 25 24 21 47 47 H 1.07997 * 119.95465 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47486 * 180.02562 * 29 28 27 49 49 H 1.09000 * 109.47124 * 300.00425 * 29 28 27 50 50 H 1.09005 * 109.46576 * 60.00024 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4448 -0.1367 6 1 4.1630 1.3334 0.7390 7 6 4.1195 1.5833 -1.3805 8 7 5.4214 1.4580 -1.5176 9 14 3.0543 1.9489 -2.8708 10 1 2.8597 3.4161 -2.9922 11 1 3.7214 1.4351 -4.0940 12 1 1.7350 1.2862 -2.7109 13 7 1.6621 2.0955 1.2605 14 6 0.6563 3.1413 1.0308 15 6 0.3441 3.8475 2.3517 16 1 0.0422 3.1101 3.0954 17 8 1.5087 4.5371 2.8100 18 6 -0.7914 4.8504 2.1378 19 8 -1.1619 5.4252 3.3925 20 6 -2.1651 6.3448 3.3787 21 6 -1.8720 7.6933 3.2135 22 8 -0.5816 8.0965 3.0658 23 6 -0.3547 9.4975 2.8999 24 6 -2.8975 8.6263 3.1942 25 6 -4.2089 8.2181 3.3505 26 6 -4.5042 6.8785 3.5207 27 6 -3.4848 5.9386 3.5359 28 8 -3.7763 4.6207 3.7029 29 6 -5.1544 4.2756 3.8576 30 1 -0.3634 -1.0255 -0.0665 31 1 -0.3634 0.4552 0.9213 32 1 -0.3634 0.5704 -0.8549 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8286 1.5551 -2.3926 36 1 2.4725 2.4701 1.7307 37 1 1.0428 3.8658 0.3140 38 1 -0.2538 2.6896 0.6362 39 1 1.8342 5.2101 2.1967 40 1 -0.4582 5.6377 1.4616 41 1 -1.6510 4.3390 1.7045 42 1 -0.7307 10.0323 3.7721 43 1 0.7143 9.6824 2.7937 44 1 -0.8746 9.8468 2.0077 45 1 -2.6709 9.6740 3.0618 46 1 -5.0051 8.9479 3.3391 47 1 -5.5300 6.5637 3.6430 48 1 -5.2470 3.1968 3.9823 49 1 -5.5585 4.7786 4.7360 50 1 -5.7087 4.5883 2.9726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576596148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:00 Heat of formation + Delta-G solvation = -136.329228 kcal Electronic energy + Delta-G solvation = -30270.329126 eV Core-core repulsion = 26071.048005 eV Total energy + Delta-G solvation = -4199.281121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97853 -39.25151 -38.46256 -37.12936 -36.48349 -35.56398 -32.35588 -31.59494 -30.71524 -29.90353 -29.27162 -28.11014 -27.23374 -26.80639 -24.18731 -22.64827 -22.32732 -22.17320 -21.25584 -19.39566 -19.07998 -17.66514 -17.32845 -17.08521 -16.74206 -16.55192 -15.96960 -15.82592 -15.75340 -15.16331 -15.11114 -15.06084 -14.29195 -14.08695 -13.95055 -13.45429 -13.32782 -13.02967 -12.89294 -12.78034 -12.58705 -12.40488 -12.27800 -12.02356 -11.85793 -11.80793 -11.65157 -11.36277 -11.34448 -11.04520 -10.91120 -10.67488 -10.58977 -10.19630 -9.96015 -9.87073 -9.74850 -9.51745 -9.02782 -8.55522 -8.48419 -8.45480 -7.32927 -6.12262 -4.12389 0.89735 1.05816 2.57296 3.15492 3.22852 3.32529 3.34893 3.37834 3.68515 4.36931 4.45471 4.62873 4.65167 4.71521 4.78977 4.83367 4.84946 4.87077 4.95177 4.98321 5.18981 5.20408 5.22348 5.24253 5.28244 5.50872 5.54010 5.62677 5.78012 5.80700 5.88456 6.05331 6.05953 6.09787 6.13128 6.13872 6.30589 6.44589 6.64740 6.79798 6.86143 7.00519 7.10377 7.13682 7.48366 7.61449 7.64106 7.98355 8.02657 8.45026 8.69234 8.97224 9.52055 11.00891 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.002761 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.776930 B =10139.478152 C =11295.589266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C 0.182 3.818 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.679 5.679 14 C 0.034 3.966 15 C 0.115 3.885 16 H 0.113 0.887 17 O -0.548 6.548 18 C 0.038 3.962 19 O -0.299 6.299 20 C 0.032 3.968 21 C 0.149 3.851 22 O -0.298 6.298 23 C 0.025 3.975 24 C -0.237 4.237 25 C -0.047 4.047 26 C -0.237 4.237 27 C 0.148 3.852 28 O -0.300 6.300 29 C 0.025 3.975 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.264 0.736 36 H 0.349 0.651 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.370 0.630 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.133 0.867 48 H 0.103 0.897 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.880 15.845 8.615 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C 0.074 3.926 4 H 0.035 0.965 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.312 5.312 14 C -0.096 4.096 15 C 0.055 3.945 16 H 0.130 0.870 17 O -0.352 6.352 18 C -0.038 4.038 19 O -0.215 6.215 20 C -0.014 4.014 21 C 0.102 3.898 22 O -0.210 6.210 23 C -0.070 4.070 24 C -0.256 4.256 25 C -0.065 4.065 26 C -0.256 4.256 27 C 0.101 3.899 28 O -0.212 6.212 29 C -0.070 4.070 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.216 0.784 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.122 0.878 44 H 0.074 0.926 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.122 0.878 49 H 0.075 0.925 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.835 14.602 9.310 28.659 hybrid contribution -0.475 1.721 -2.150 2.795 sum -23.310 16.323 7.160 29.344 Atomic orbital electron populations 1.21826 0.98614 0.99326 1.00651 1.21636 0.92612 0.99183 1.00593 1.19627 0.95180 0.91128 0.86673 0.96537 1.21378 0.89704 1.50611 0.95111 0.90346 1.25036 0.94756 0.94434 0.98600 1.69916 1.09923 1.49330 1.24086 0.86925 0.81410 0.78891 0.82804 1.20436 1.21364 1.18710 1.60686 1.16289 1.28962 1.25280 1.22533 0.98123 0.94386 0.94585 1.21983 0.83118 0.91850 0.97507 0.86961 1.86627 1.44621 1.55098 1.48837 1.23560 0.98529 0.96423 0.85292 1.86259 1.50309 1.55070 1.29832 1.17084 0.85943 0.86356 1.12003 1.19083 0.84148 0.92108 0.94438 1.86226 1.22313 1.25948 1.86492 1.23141 1.03482 0.79421 1.00935 1.21088 0.92769 0.99410 1.12340 1.20711 0.95810 0.95062 0.94963 1.21076 0.98656 0.93505 1.12359 1.19080 0.92190 0.83731 0.94900 1.86212 1.27707 1.20843 1.86430 1.23137 0.80334 1.02447 1.01036 0.94696 0.92596 0.94642 0.93393 0.92479 0.92608 0.83166 0.95707 0.91173 0.78365 0.93003 0.92345 0.92518 0.87807 0.92607 0.84877 0.85212 0.84882 0.87849 0.92507 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.26 37.15 0.34 -2.36 16 2 C -0.10 -2.23 5.59 -26.73 -0.15 -2.38 16 3 C 0.18 4.29 1.86 -68.86 -0.13 4.17 16 4 H 0.02 0.40 4.59 -51.93 -0.24 0.17 16 5 C -0.53 -14.73 8.69 -34.44 -0.30 -15.03 16 6 H 0.08 2.39 8.01 -52.49 -0.42 1.97 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 9 Si 0.87 21.42 27.09 -169.99 -4.60 16.81 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.21 6.68 56.52 0.38 -5.83 16 13 N -0.68 -14.18 6.00 -107.95 -0.65 -14.83 16 14 C 0.03 0.60 4.91 -3.82 -0.02 0.59 16 15 C 0.12 1.85 3.48 -26.73 -0.09 1.76 16 16 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 17 O -0.55 -9.34 12.78 -40.08 -0.51 -9.85 16 18 C 0.04 0.55 5.70 37.16 0.21 0.76 16 19 O -0.30 -4.82 9.59 -48.24 -0.46 -5.29 16 20 C 0.03 0.45 5.75 -39.03 -0.22 0.22 16 21 C 0.15 1.83 6.70 -39.15 -0.26 1.57 16 22 O -0.30 -3.66 10.28 -34.29 -0.35 -4.01 16 23 C 0.03 0.19 9.81 101.05 0.99 1.18 16 24 C -0.24 -2.19 9.04 -39.42 -0.36 -2.55 16 25 C -0.05 -0.39 10.04 -39.59 -0.40 -0.78 16 26 C -0.24 -2.17 9.04 -39.43 -0.36 -2.52 16 27 C 0.15 1.80 6.70 -39.15 -0.26 1.53 16 28 O -0.30 -3.61 10.28 -34.32 -0.35 -3.96 16 29 C 0.03 0.18 9.81 101.05 0.99 1.17 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.99 7.36 -51.93 -0.38 0.61 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.35 7.72 7.55 -39.29 -0.30 7.43 16 37 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.07 1.18 7.25 -51.93 -0.38 0.80 16 39 H 0.37 5.27 9.05 45.56 0.41 5.68 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 45 H 0.13 0.89 6.29 -52.48 -0.33 0.56 16 46 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 50 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 407.47 15.07 6.14 6.14 Total: -1.00 -33.96 407.47 -7.48 -41.45 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.36 Total: 10.59 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.11 Total: -10.63 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.13 Total: -41.25 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -1.68 Total: -23.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.60 Total: 16.81 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.96 -7.48 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576596148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.880 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds