Wall clock time and date at job start Tue Mar 31 2020 23:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47190 * 305.51800 * 3 2 1 5 5 C 1.50706 * 109.47100 * 185.52199 * 3 2 1 6 6 H 1.08002 * 119.99914 * 275.05098 * 5 3 2 7 7 C 1.37879 * 120.00026 * 94.77456 * 5 3 2 8 8 N 1.31507 * 119.99908 * 186.47924 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 6.47706 * 7 5 3 10 10 H 1.48499 * 109.46889 * 86.58165 * 9 7 5 11 11 H 1.48498 * 109.46795 * 206.58360 * 9 7 5 12 12 H 1.48500 * 109.47219 * 326.58390 * 9 7 5 13 13 N 1.46895 * 109.47096 * 65.52103 * 3 2 1 14 14 C 1.46902 * 111.00030 * 248.43513 * 13 3 2 15 15 C 1.53005 * 109.47149 * 183.01130 * 14 13 3 16 16 H 1.08998 * 109.46900 * 304.99534 * 15 14 13 17 17 O 1.42897 * 109.47111 * 64.99704 * 15 14 13 18 18 C 1.52996 * 109.47101 * 184.99771 * 15 14 13 19 19 O 1.42892 * 109.47221 * 174.99449 * 18 15 14 20 20 C 1.36098 * 117.00186 * 179.97438 * 19 18 15 21 21 C 1.38982 * 120.08713 * 269.72928 * 20 19 18 22 22 O 1.35990 * 120.04633 * 359.97438 * 21 20 19 23 23 C 1.42900 * 116.99994 * 179.97438 * 22 21 20 24 24 C 1.38667 * 119.90410 * 179.71833 * 21 20 19 25 25 C 1.38234 * 120.09048 * 0.55951 * 24 21 20 26 26 C 1.38228 * 120.18106 * 359.71537 * 25 24 21 27 27 C 1.38668 * 120.08323 * 0.02562 * 26 25 24 28 28 O 1.35997 * 120.04053 * 180.02562 * 27 26 25 29 29 C 1.42906 * 117.00171 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47440 * 176.29136 * 1 2 3 31 31 H 1.09001 * 109.47271 * 296.29460 * 1 2 3 32 32 H 1.09006 * 109.47307 * 56.29044 * 1 2 3 33 33 H 1.08995 * 109.47357 * 239.99820 * 2 1 3 34 34 H 1.09003 * 109.47522 * 120.00046 * 2 1 3 35 35 H 0.97004 * 120.00222 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99920 * 124.47652 * 13 3 2 37 37 H 1.09000 * 109.46844 * 303.00489 * 14 13 3 38 38 H 1.08995 * 109.46960 * 63.00759 * 14 13 3 39 39 H 0.96697 * 114.00185 * 59.99963 * 17 15 14 40 40 H 1.08997 * 109.47115 * 295.00271 * 18 15 14 41 41 H 1.09004 * 109.46693 * 54.99665 * 18 15 14 42 42 H 1.08997 * 109.47157 * 59.99568 * 23 22 21 43 43 H 1.09002 * 109.47235 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.47313 * 300.00039 * 23 22 21 45 45 H 1.08004 * 119.95095 * 180.25133 * 24 21 20 46 46 H 1.08005 * 119.90565 * 179.74539 * 25 24 21 47 47 H 1.07997 * 119.95465 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47486 * 180.02562 * 29 28 27 49 49 H 1.09000 * 109.47124 * 300.00425 * 29 28 27 50 50 H 1.09005 * 109.46576 * 60.00024 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4448 -0.1367 6 1 4.1630 1.3334 0.7390 7 6 4.1195 1.5833 -1.3805 8 7 5.4214 1.4580 -1.5176 9 14 3.0543 1.9489 -2.8708 10 1 2.8597 3.4161 -2.9922 11 1 3.7214 1.4351 -4.0940 12 1 1.7350 1.2862 -2.7109 13 7 1.6621 2.0955 1.2605 14 6 0.6563 3.1413 1.0308 15 6 0.3441 3.8475 2.3517 16 1 0.0422 3.1101 3.0954 17 8 1.5087 4.5371 2.8100 18 6 -0.7914 4.8504 2.1378 19 8 -1.1619 5.4252 3.3925 20 6 -2.1651 6.3448 3.3787 21 6 -1.8720 7.6933 3.2135 22 8 -0.5816 8.0965 3.0658 23 6 -0.3547 9.4975 2.8999 24 6 -2.8975 8.6263 3.1942 25 6 -4.2089 8.2181 3.3505 26 6 -4.5042 6.8785 3.5207 27 6 -3.4848 5.9386 3.5359 28 8 -3.7763 4.6207 3.7029 29 6 -5.1544 4.2756 3.8576 30 1 -0.3634 -1.0255 -0.0665 31 1 -0.3634 0.4552 0.9213 32 1 -0.3634 0.5704 -0.8549 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8286 1.5551 -2.3926 36 1 2.4725 2.4701 1.7307 37 1 1.0428 3.8658 0.3140 38 1 -0.2538 2.6896 0.6362 39 1 1.8342 5.2101 2.1967 40 1 -0.4582 5.6377 1.4616 41 1 -1.6510 4.3390 1.7045 42 1 -0.7307 10.0323 3.7721 43 1 0.7143 9.6824 2.7937 44 1 -0.8746 9.8468 2.0077 45 1 -2.6709 9.6740 3.0618 46 1 -5.0051 8.9479 3.3391 47 1 -5.5300 6.5637 3.6430 48 1 -5.2470 3.1968 3.9823 49 1 -5.5585 4.7786 4.7360 50 1 -5.7087 4.5883 2.9726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576596148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:59 Heat of formation + Delta-G solvation = -162.059796 kcal Electronic energy + Delta-G solvation = -30271.444887 eV Core-core repulsion = 26071.048005 eV Total energy + Delta-G solvation = -4200.396882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76190 -39.99189 -39.67216 -38.40820 -37.37945 -37.03788 -34.40898 -33.20504 -31.73337 -30.60458 -30.52288 -28.88971 -28.69263 -27.51012 -25.70164 -24.20483 -23.32220 -22.87964 -22.64528 -21.21350 -19.86664 -19.28387 -18.40489 -18.16339 -17.71524 -17.45992 -17.20917 -16.96471 -16.73723 -16.43781 -15.86782 -15.79906 -15.73542 -15.41424 -15.37627 -14.76903 -14.73989 -14.51964 -14.10623 -13.80923 -13.64882 -13.59193 -13.38609 -13.28595 -13.04735 -12.96122 -12.79561 -12.45897 -12.40744 -12.38978 -12.17215 -12.02128 -11.81277 -11.68402 -11.66992 -11.55922 -11.10571 -10.99008 -10.88691 -10.65632 -9.30052 -9.19166 -9.05691 -8.33229 -6.38412 0.13187 0.32397 1.29147 1.31952 1.42969 1.90015 2.29976 2.31531 2.72292 2.77196 3.01605 3.45859 3.56759 3.87990 3.97370 4.03029 4.03672 4.10644 4.12217 4.24021 4.34918 4.36548 4.38362 4.39103 4.40487 4.40863 4.47481 4.53564 4.57992 4.67045 4.71816 4.72702 4.75221 4.85616 5.08990 5.15941 5.16325 5.22677 5.37151 5.38177 5.43649 5.44736 5.54176 5.78181 6.00544 6.08497 6.31922 6.49309 6.65848 6.70788 6.78724 6.86437 7.30397 8.83657 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.002761 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.776930 B =10139.478152 C =11295.589266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.188 3.812 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.034 0.966 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.243 1.243 13 N -0.679 5.679 14 C 0.038 3.962 15 C 0.126 3.874 16 H 0.100 0.900 17 O -0.565 6.565 18 C 0.048 3.952 19 O -0.323 6.323 20 C -0.014 4.014 21 C 0.133 3.867 22 O -0.329 6.329 23 C 0.017 3.983 24 C -0.236 4.236 25 C -0.037 4.037 26 C -0.235 4.235 27 C 0.134 3.866 28 O -0.330 6.330 29 C 0.017 3.983 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.267 0.733 36 H 0.338 0.662 37 H 0.025 0.975 38 H 0.085 0.915 39 H 0.380 0.620 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.160 0.840 46 H 0.169 0.831 47 H 0.161 0.839 48 H 0.113 0.887 49 H 0.071 0.929 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.914 17.639 7.819 33.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.079 3.921 4 H 0.037 0.963 5 C -0.572 4.572 6 H 0.052 0.948 7 C -0.182 4.182 8 N -0.584 5.584 9 Si 0.762 3.238 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.167 1.167 13 N -0.310 5.310 14 C -0.092 4.092 15 C 0.067 3.933 16 H 0.118 0.882 17 O -0.371 6.371 18 C -0.027 4.027 19 O -0.240 6.240 20 C -0.059 4.059 21 C 0.086 3.914 22 O -0.243 6.243 23 C -0.077 4.077 24 C -0.255 4.255 25 C -0.055 4.055 26 C -0.253 4.253 27 C 0.088 3.912 28 O -0.243 6.243 29 C -0.077 4.077 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.228 0.772 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.177 0.823 46 H 0.187 0.813 47 H 0.179 0.821 48 H 0.131 0.869 49 H 0.089 0.911 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.903 16.408 8.529 32.645 hybrid contribution 0.780 1.216 -1.772 2.286 sum -26.123 17.624 6.758 32.228 Atomic orbital electron populations 1.21711 0.95266 1.01148 1.01276 1.21566 0.95577 0.97523 0.99520 1.19529 0.92198 0.92582 0.87798 0.96276 1.21620 0.91941 1.49932 0.93730 0.94800 1.25911 0.95987 0.94264 1.01993 1.70067 1.12087 1.51176 1.25070 0.85869 0.80175 0.79322 0.78462 1.19280 1.21087 1.16674 1.60660 1.16229 1.30331 1.23773 1.22574 0.97501 0.93654 0.95471 1.21787 0.83464 0.91959 0.96135 0.88223 1.86589 1.45218 1.55613 1.49697 1.23344 0.97891 0.96031 0.85465 1.86194 1.51595 1.56022 1.30188 1.17575 0.86363 0.86811 1.15181 1.19316 0.84880 0.92149 0.95018 1.86172 1.22870 1.28489 1.86723 1.23404 1.04429 0.77542 1.02321 1.21439 0.92563 1.00151 1.11330 1.21218 0.96328 0.95421 0.92558 1.21439 0.99227 0.93472 1.11212 1.19286 0.92250 0.84433 0.95280 1.86162 1.30437 1.21164 1.86580 1.23422 0.78498 1.03375 1.02435 0.92371 0.92068 0.93842 0.94567 0.93615 0.92448 0.84354 0.95724 0.89648 0.77153 0.92743 0.91726 0.91052 0.87042 0.91045 0.82286 0.81346 0.82114 0.86867 0.91051 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.26 71.98 0.67 -4.01 16 2 C -0.10 -4.45 5.59 30.59 0.17 -4.28 16 3 C 0.19 8.82 1.86 44.17 0.08 8.90 16 4 H 0.02 0.90 4.59 -2.39 -0.01 0.89 16 5 C -0.53 -30.63 8.69 25.60 0.22 -30.41 16 6 H 0.03 2.19 8.01 -2.91 -0.02 2.16 16 7 C 0.02 0.98 5.47 84.66 0.46 1.44 16 8 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 9 Si 0.94 43.93 27.09 68.60 1.86 45.79 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.24 -10.56 6.68 99.48 0.66 -9.90 16 13 N -0.68 -28.52 6.00 -495.43 -2.97 -31.49 16 14 C 0.04 1.32 4.91 86.30 0.42 1.74 16 15 C 0.13 4.10 3.48 30.59 0.11 4.21 16 16 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 17 O -0.57 -19.82 12.78 -144.34 -1.84 -21.66 16 18 C 0.05 1.43 5.70 71.98 0.41 1.84 16 19 O -0.32 -10.75 9.59 -67.71 -0.65 -11.40 16 20 C -0.01 -0.40 5.75 22.62 0.13 -0.27 16 21 C 0.13 3.19 6.70 22.55 0.15 3.34 16 22 O -0.33 -8.07 10.28 -79.49 -0.82 -8.89 16 23 C 0.02 0.23 9.81 113.37 1.11 1.34 16 24 C -0.24 -3.77 9.04 22.37 0.20 -3.56 16 25 C -0.04 -0.47 10.04 22.27 0.22 -0.25 16 26 C -0.23 -3.64 9.04 22.37 0.20 -3.44 16 27 C 0.13 3.14 6.70 22.55 0.15 3.29 16 28 O -0.33 -7.75 10.28 -79.57 -0.82 -8.57 16 29 C 0.02 0.20 9.81 113.37 1.11 1.32 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.02 7.36 -2.39 -0.02 2.01 16 32 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.34 15.51 7.55 -89.69 -0.68 14.83 16 37 H 0.02 0.86 8.10 -2.39 -0.02 0.85 16 38 H 0.09 2.71 7.25 -2.39 -0.02 2.69 16 39 H 0.38 11.18 9.05 -74.06 -0.67 10.51 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 0.72 7.67 -2.39 -0.02 0.71 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 0.71 7.65 -2.38 -0.02 0.70 16 45 H 0.16 1.57 6.29 -2.91 -0.02 1.56 16 46 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 47 H 0.16 1.47 6.29 -2.91 -0.02 1.45 16 48 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 50 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 Total: -1.00 -77.05 407.47 0.45 -76.60 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.43 Total: 37.32 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.83 Total: -18.80 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.67 Total: -90.39 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -4.13 Total: -50.52 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.86 Total: 45.79 kcal Total: -77.05 0.45 -76.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576596148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.459 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds