Wall clock time and date at job start Tue Mar 31 2020 23:33:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47231 * 2 1
4 4 H 1.09000 * 109.47557 * 185.15990 * 3 2 1
5 5 C 1.50703 * 109.47055 * 305.16578 * 3 2 1
6 6 H 1.07992 * 120.00167 * 120.00136 * 5 3 2
7 7 C 1.37873 * 119.99759 * 299.99586 * 5 3 2
8 8 N 1.31520 * 120.00161 * 0.02562 * 7 5 3
9 9 Si 1.86808 * 120.00105 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.46920 * 89.99877 * 9 7 5
11 11 H 1.48501 * 109.46895 * 209.99939 * 9 7 5
12 12 H 1.48496 * 109.46623 * 330.00113 * 9 7 5
13 13 N 1.46909 * 109.46943 * 65.15967 * 3 2 1
14 14 C 1.46903 * 110.99429 * 85.92107 * 13 3 2
15 15 C 1.53007 * 109.46578 * 174.67825 * 14 13 3
16 16 H 1.08996 * 109.47084 * 304.99521 * 15 14 13
17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13
18 18 C 1.52997 * 109.46799 * 185.00008 * 15 14 13
19 19 O 1.42901 * 109.47200 * 175.00231 * 18 15 14
20 20 C 1.36099 * 117.00167 * 179.97438 * 19 18 15
21 21 C 1.38977 * 120.08703 * 269.72082 * 20 19 18
22 22 O 1.35994 * 120.04631 * 0.02562 * 21 20 19
23 23 C 1.42894 * 116.99965 * 179.97438 * 22 21 20
24 24 C 1.38669 * 119.90388 * 179.72259 * 21 20 19
25 25 C 1.38224 * 120.09271 * 0.55343 * 24 21 20
26 26 C 1.38233 * 120.17901 * 359.72264 * 25 24 21
27 27 C 1.38672 * 120.08686 * 0.02562 * 26 25 24
28 28 O 1.35996 * 120.04151 * 180.02562 * 27 26 25
29 29 C 1.42898 * 117.00281 * 359.97438 * 28 27 26
30 30 H 1.08996 * 109.47195 * 54.84933 * 1 2 3
31 31 H 1.08998 * 109.47195 * 294.84762 * 1 2 3
32 32 H 1.09003 * 109.47166 * 174.85120 * 1 2 3
33 33 H 1.09002 * 109.47260 * 120.00008 * 2 1 3
34 34 H 1.08997 * 109.47448 * 240.00365 * 2 1 3
35 35 H 0.97001 * 119.99982 * 180.02562 * 8 7 5
36 36 H 1.00891 * 111.00094 * 321.96730 * 13 3 2
37 37 H 1.08994 * 109.46864 * 294.67155 * 14 13 3
38 38 H 1.08994 * 109.47486 * 54.67842 * 14 13 3
39 39 H 0.96702 * 113.99922 * 59.99758 * 17 15 14
40 40 H 1.09008 * 109.47321 * 294.99649 * 18 15 14
41 41 H 1.09001 * 109.47656 * 54.99761 * 18 15 14
42 42 H 1.08998 * 109.47066 * 299.99339 * 23 22 21
43 43 H 1.08998 * 109.47602 * 59.99796 * 23 22 21
44 44 H 1.09007 * 109.47017 * 179.97438 * 23 22 21
45 45 H 1.08001 * 119.95025 * 180.25839 * 24 21 20
46 46 H 1.07991 * 119.91243 * 179.74589 * 25 24 21
47 47 H 1.07999 * 119.95501 * 179.97438 * 26 25 24
48 48 H 1.08997 * 109.47633 * 180.02562 * 29 28 27
49 49 H 1.09003 * 109.47053 * 300.00313 * 29 28 27
50 50 H 1.08999 * 109.47212 * 59.99622 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1261 1.4439 -0.0924
5 6 1.4359 2.1889 -1.1615
6 1 0.8269 3.0628 -0.9838
7 6 1.6610 1.7560 -2.4511
8 7 2.4024 0.6915 -2.6675
9 14 0.9128 2.6816 -3.8910
10 1 1.8550 3.7359 -4.3450
11 1 0.6534 1.7359 -5.0061
12 1 -0.3645 3.3087 -3.4662
13 7 1.6546 2.0981 1.2569
14 6 2.6435 1.8370 2.3115
15 6 2.2798 2.6404 3.5618
16 1 2.1894 3.6952 3.3023
17 8 1.0360 2.1703 4.0850
18 6 3.3749 2.4667 4.6160
19 8 3.0945 3.3072 5.7371
20 6 3.9777 3.2720 6.7720
21 6 3.7956 2.3693 7.8130
22 8 2.7344 1.5190 7.7991
23 6 2.6105 0.6182 8.9014
24 6 4.7011 2.3328 8.8626
25 6 5.7771 3.2002 8.8803
26 6 5.9586 4.1033 7.8496
27 6 5.0606 4.1428 6.7937
28 8 5.2403 5.0313 5.7799
29 6 6.3755 5.8949 5.8677
30 1 -0.3633 0.5916 -0.8402
31 1 -0.3633 0.4318 0.9325
32 1 -0.3634 -1.0235 -0.0922
33 1 1.8933 -0.5138 0.8900
34 1 1.8933 -0.5137 -0.8900
35 1 2.5610 0.3872 -3.5748
36 1 0.7322 1.8102 1.5469
37 1 2.6468 0.7737 2.5511
38 1 3.6328 2.1342 1.9636
39 1 1.0432 1.2369 4.3378
40 1 3.4052 1.4264 4.9404
41 1 4.3387 2.7418 4.1876
42 1 3.4944 -0.0175 8.9523
43 1 2.5181 1.1868 9.8267
44 1 1.7241 -0.0017 8.7662
45 1 4.5626 1.6288 9.6699
46 1 6.4782 3.1720 9.7012
47 1 6.8004 4.7797 7.8673
48 1 6.4004 6.5519 4.9984
49 1 6.3059 6.4954 6.7747
50 1 7.2859 5.2963 5.8974
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000576596150.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:33:06
Heat of formation + Delta-G solvation = -132.733436 kcal
Electronic energy + Delta-G solvation = -30087.135210 eV
Core-core repulsion = 25888.010014 eV
Total energy + Delta-G solvation = -4199.125196 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.95493 -39.23008 -38.43215 -37.11972 -36.47097 -35.63302 -32.47777 -31.10759
-30.44642 -29.88198 -28.93109 -28.08968 -26.93527 -26.36190 -24.21506 -23.10710
-22.46943 -22.15197 -21.21344 -19.27857 -19.03775 -17.56448 -17.30320 -16.72051
-16.64860 -16.22868 -15.86490 -15.78522 -15.71368 -15.09145 -15.03806 -14.82428
-14.49776 -14.18242 -13.83491 -13.49700 -13.09772 -13.00808 -12.84024 -12.56317
-12.53108 -12.33366 -12.28154 -11.87478 -11.80263 -11.75581 -11.43501 -11.34002
-11.02428 -10.88717 -10.76391 -10.50247 -10.43965 -10.03319 -9.90312 -9.84076
-9.55818 -9.46681 -8.91279 -8.46248 -8.43650 -8.29622 -7.14791 -5.93116
-3.94069 0.92087 1.07987 2.59528 3.18098 3.36729 3.40018 3.42888
3.47815 3.71646 4.46908 4.49329 4.64949 4.68009 4.74805 4.80414
4.85401 4.86436 4.89994 4.97154 5.04276 5.20491 5.24574 5.27625
5.32249 5.38607 5.57475 5.61156 5.67602 5.80164 5.88417 5.92916
6.07446 6.08168 6.22151 6.40223 6.41600 6.51827 6.62448 6.88663
6.94697 7.02829 7.32130 7.33289 7.57290 7.64559 7.74536 7.94562
8.00049 8.33368 8.63494 8.68621 9.12314 9.69491 11.14045
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.015714 B = 0.002399 C = 0.002168
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1781.424861 B =11669.124991 C =12909.760947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.145 4.145
3 C 0.215 3.785
4 H 0.031 0.969
5 C -0.486 4.486
6 H 0.062 0.938
7 C 0.056 3.944
8 N -0.898 5.898
9 Si 0.894 3.106
10 H -0.282 1.282
11 H -0.289 1.289
12 H -0.274 1.274
13 N -0.678 5.678
14 C 0.036 3.964
15 C 0.116 3.884
16 H 0.114 0.886
17 O -0.549 6.549
18 C 0.038 3.962
19 O -0.299 6.299
20 C 0.032 3.968
21 C 0.148 3.852
22 O -0.298 6.298
23 C 0.025 3.975
24 C -0.237 4.237
25 C -0.047 4.047
26 C -0.237 4.237
27 C 0.148 3.852
28 O -0.299 6.299
29 C 0.025 3.975
30 H 0.069 0.931
31 H 0.029 0.971
32 H 0.022 0.978
33 H 0.009 0.991
34 H 0.092 0.908
35 H 0.258 0.742
36 H 0.334 0.666
37 H 0.020 0.980
38 H 0.073 0.927
39 H 0.366 0.634
40 H 0.050 0.950
41 H 0.060 0.940
42 H 0.055 0.945
43 H 0.056 0.944
44 H 0.103 0.897
45 H 0.133 0.867
46 H 0.130 0.870
47 H 0.134 0.866
48 H 0.104 0.896
49 H 0.056 0.944
50 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.691 2.009 25.877 27.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.184 4.184
3 C 0.107 3.893
4 H 0.049 0.951
5 C -0.525 4.525
6 H 0.081 0.919
7 C -0.144 4.144
8 N -0.538 5.538
9 Si 0.722 3.278
10 H -0.208 1.208
11 H -0.215 1.215
12 H -0.199 1.199
13 N -0.310 5.310
14 C -0.095 4.095
15 C 0.056 3.944
16 H 0.132 0.868
17 O -0.353 6.353
18 C -0.037 4.037
19 O -0.215 6.215
20 C -0.014 4.014
21 C 0.102 3.898
22 O -0.211 6.211
23 C -0.070 4.070
24 C -0.256 4.256
25 C -0.066 4.066
26 C -0.256 4.256
27 C 0.101 3.899
28 O -0.211 6.211
29 C -0.070 4.070
30 H 0.088 0.912
31 H 0.048 0.952
32 H 0.042 0.958
33 H 0.027 0.973
34 H 0.110 0.890
35 H 0.068 0.932
36 H 0.153 0.847
37 H 0.038 0.962
38 H 0.091 0.909
39 H 0.211 0.789
40 H 0.069 0.931
41 H 0.078 0.922
42 H 0.074 0.926
43 H 0.075 0.925
44 H 0.121 0.879
45 H 0.151 0.849
46 H 0.148 0.852
47 H 0.151 0.849
48 H 0.122 0.878
49 H 0.075 0.925
50 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 8.410 3.255 25.076 26.648
hybrid contribution 0.385 -1.324 -0.093 1.382
sum 8.795 1.931 24.983 26.556
Atomic orbital electron populations
1.21601 0.97588 0.98628 1.00988 1.22100 0.95129 1.01120 1.00081
1.19238 0.95831 0.88608 0.85615 0.95137 1.21088 1.30337 1.11426
0.89634 0.91936 1.24917 0.95616 0.95179 0.98735 1.69888 1.39269
1.24049 1.20601 0.86563 0.79666 0.79501 0.82076 1.20848 1.21514
1.19884 1.60693 1.04029 1.63197 1.03090 1.22428 0.98405 0.96122
0.92543 1.22029 0.82164 1.00896 0.89264 0.86840 1.86640 1.33768
1.30185 1.84668 1.23562 0.99802 0.93547 0.86818 1.86261 1.45401
1.64333 1.25527 1.17089 0.93829 0.98906 0.91530 1.19068 0.87453
0.89363 0.93959 1.86217 1.42571 1.46936 1.45326 1.23129 1.03029
0.92185 0.88623 1.21073 0.98353 1.05688 1.00526 1.20703 0.95965
0.92864 0.97033 1.21086 1.02454 1.05414 0.96608 1.19095 0.92456
0.90206 0.88093 1.86222 1.46486 1.46229 1.42166 1.23143 0.87136
0.93040 1.03641 0.91216 0.95169 0.95838 0.97278 0.88965 0.93194
0.84659 0.96221 0.90854 0.78855 0.93123 0.92218 0.92614 0.92538
0.87898 0.84918 0.85225 0.84865 0.87784 0.92534 0.92540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.86 9.40 37.16 0.35 -2.51 16
2 C -0.14 -3.43 5.51 -26.73 -0.15 -3.58 16
3 C 0.21 5.39 2.33 -68.86 -0.16 5.23 16
4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16
5 C -0.49 -13.40 7.25 -34.44 -0.25 -13.65 16
6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16
7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16
8 N -0.90 -25.59 11.38 55.43 0.63 -24.96 16
9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16
10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
13 N -0.68 -14.83 6.21 -107.94 -0.67 -15.50 16
14 C 0.04 0.65 5.18 -3.82 -0.02 0.63 16
15 C 0.12 1.92 3.49 -26.73 -0.09 1.83 16
16 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16
17 O -0.55 -9.17 12.92 -40.09 -0.52 -9.69 16
18 C 0.04 0.57 5.70 37.16 0.21 0.78 16
19 O -0.30 -4.90 9.59 -48.24 -0.46 -5.37 16
20 C 0.03 0.46 5.75 -39.03 -0.22 0.23 16
21 C 0.15 1.82 6.70 -39.15 -0.26 1.56 16
22 O -0.30 -3.59 10.28 -34.31 -0.35 -3.94 16
23 C 0.03 0.18 9.81 101.05 0.99 1.17 16
24 C -0.24 -2.19 9.04 -39.43 -0.36 -2.55 16
25 C -0.05 -0.39 10.04 -39.59 -0.40 -0.79 16
26 C -0.24 -2.22 9.04 -39.42 -0.36 -2.57 16
27 C 0.15 1.85 6.70 -39.15 -0.26 1.59 16
28 O -0.30 -3.77 10.28 -34.31 -0.35 -4.12 16
29 C 0.03 0.19 9.81 101.05 0.99 1.19 16
30 H 0.07 1.67 6.85 -51.93 -0.36 1.32 16
31 H 0.03 0.60 6.63 -51.93 -0.34 0.25 16
32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
33 H 0.01 0.19 7.50 -51.93 -0.39 -0.20 16
34 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16
35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16
36 H 0.33 7.19 6.33 -39.30 -0.25 6.95 16
37 H 0.02 0.35 7.54 -51.93 -0.39 -0.05 16
38 H 0.07 1.35 7.92 -51.93 -0.41 0.94 16
39 H 0.37 4.88 9.05 45.56 0.41 5.29 16
40 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16
41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
42 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16
43 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16
44 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16
45 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16
46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
47 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16
48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16
50 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16
LS Contribution 404.55 15.07 6.10 6.10
Total: -1.00 -33.01 404.55 -7.94 -40.94
By element:
Atomic # 1 Polarization: 17.08 SS G_CDS: -7.21 Total: 9.87 kcal
Atomic # 6 Polarization: -9.91 SS G_CDS: -0.08 Total: -9.99 kcal
Atomic # 7 Polarization: -40.42 SS G_CDS: -0.04 Total: -40.46 kcal
Atomic # 8 Polarization: -21.43 SS G_CDS: -1.69 Total: -23.12 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.01 -7.94 -40.94 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000576596150.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.789 kcal
(2) G-P(sol) polarization free energy of solvation -33.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.795 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.733 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds