Wall clock time and date at job start Tue Mar 31 2020 23:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47231 * 2 1 4 4 H 1.09000 * 109.47557 * 185.15990 * 3 2 1 5 5 C 1.50703 * 109.47055 * 305.16578 * 3 2 1 6 6 H 1.07992 * 120.00167 * 120.00136 * 5 3 2 7 7 C 1.37873 * 119.99759 * 299.99586 * 5 3 2 8 8 N 1.31520 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00105 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46920 * 89.99877 * 9 7 5 11 11 H 1.48501 * 109.46895 * 209.99939 * 9 7 5 12 12 H 1.48496 * 109.46623 * 330.00113 * 9 7 5 13 13 N 1.46909 * 109.46943 * 65.15967 * 3 2 1 14 14 C 1.46903 * 110.99429 * 85.92107 * 13 3 2 15 15 C 1.53007 * 109.46578 * 174.67825 * 14 13 3 16 16 H 1.08996 * 109.47084 * 304.99521 * 15 14 13 17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13 18 18 C 1.52997 * 109.46799 * 185.00008 * 15 14 13 19 19 O 1.42901 * 109.47200 * 175.00231 * 18 15 14 20 20 C 1.36099 * 117.00167 * 179.97438 * 19 18 15 21 21 C 1.38977 * 120.08703 * 269.72082 * 20 19 18 22 22 O 1.35994 * 120.04631 * 0.02562 * 21 20 19 23 23 C 1.42894 * 116.99965 * 179.97438 * 22 21 20 24 24 C 1.38669 * 119.90388 * 179.72259 * 21 20 19 25 25 C 1.38224 * 120.09271 * 0.55343 * 24 21 20 26 26 C 1.38233 * 120.17901 * 359.72264 * 25 24 21 27 27 C 1.38672 * 120.08686 * 0.02562 * 26 25 24 28 28 O 1.35996 * 120.04151 * 180.02562 * 27 26 25 29 29 C 1.42898 * 117.00281 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47195 * 54.84933 * 1 2 3 31 31 H 1.08998 * 109.47195 * 294.84762 * 1 2 3 32 32 H 1.09003 * 109.47166 * 174.85120 * 1 2 3 33 33 H 1.09002 * 109.47260 * 120.00008 * 2 1 3 34 34 H 1.08997 * 109.47448 * 240.00365 * 2 1 3 35 35 H 0.97001 * 119.99982 * 180.02562 * 8 7 5 36 36 H 1.00891 * 111.00094 * 321.96730 * 13 3 2 37 37 H 1.08994 * 109.46864 * 294.67155 * 14 13 3 38 38 H 1.08994 * 109.47486 * 54.67842 * 14 13 3 39 39 H 0.96702 * 113.99922 * 59.99758 * 17 15 14 40 40 H 1.09008 * 109.47321 * 294.99649 * 18 15 14 41 41 H 1.09001 * 109.47656 * 54.99761 * 18 15 14 42 42 H 1.08998 * 109.47066 * 299.99339 * 23 22 21 43 43 H 1.08998 * 109.47602 * 59.99796 * 23 22 21 44 44 H 1.09007 * 109.47017 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.95025 * 180.25839 * 24 21 20 46 46 H 1.07991 * 119.91243 * 179.74589 * 25 24 21 47 47 H 1.07999 * 119.95501 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.47633 * 180.02562 * 29 28 27 49 49 H 1.09003 * 109.47053 * 300.00313 * 29 28 27 50 50 H 1.08999 * 109.47212 * 59.99622 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4359 2.1889 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6915 -2.6675 9 14 0.9128 2.6816 -3.8910 10 1 1.8550 3.7359 -4.3450 11 1 0.6534 1.7359 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6546 2.0981 1.2569 14 6 2.6435 1.8370 2.3115 15 6 2.2798 2.6404 3.5618 16 1 2.1894 3.6952 3.3023 17 8 1.0360 2.1703 4.0850 18 6 3.3749 2.4667 4.6160 19 8 3.0945 3.3072 5.7371 20 6 3.9777 3.2720 6.7720 21 6 3.7956 2.3693 7.8130 22 8 2.7344 1.5190 7.7991 23 6 2.6105 0.6182 8.9014 24 6 4.7011 2.3328 8.8626 25 6 5.7771 3.2002 8.8803 26 6 5.9586 4.1033 7.8496 27 6 5.0606 4.1428 6.7937 28 8 5.2403 5.0313 5.7799 29 6 6.3755 5.8949 5.8677 30 1 -0.3633 0.5916 -0.8402 31 1 -0.3633 0.4318 0.9325 32 1 -0.3634 -1.0235 -0.0922 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 2.5610 0.3872 -3.5748 36 1 0.7322 1.8102 1.5469 37 1 2.6468 0.7737 2.5511 38 1 3.6328 2.1342 1.9636 39 1 1.0432 1.2369 4.3378 40 1 3.4052 1.4264 4.9404 41 1 4.3387 2.7418 4.1876 42 1 3.4944 -0.0175 8.9523 43 1 2.5181 1.1868 9.8267 44 1 1.7241 -0.0017 8.7662 45 1 4.5626 1.6288 9.6699 46 1 6.4782 3.1720 9.7012 47 1 6.8004 4.7797 7.8673 48 1 6.4004 6.5519 4.9984 49 1 6.3059 6.4954 6.7747 50 1 7.2859 5.2963 5.8974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576596150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:06 Heat of formation + Delta-G solvation = -132.733436 kcal Electronic energy + Delta-G solvation = -30087.135210 eV Core-core repulsion = 25888.010014 eV Total energy + Delta-G solvation = -4199.125196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95493 -39.23008 -38.43215 -37.11972 -36.47097 -35.63302 -32.47777 -31.10759 -30.44642 -29.88198 -28.93109 -28.08968 -26.93527 -26.36190 -24.21506 -23.10710 -22.46943 -22.15197 -21.21344 -19.27857 -19.03775 -17.56448 -17.30320 -16.72051 -16.64860 -16.22868 -15.86490 -15.78522 -15.71368 -15.09145 -15.03806 -14.82428 -14.49776 -14.18242 -13.83491 -13.49700 -13.09772 -13.00808 -12.84024 -12.56317 -12.53108 -12.33366 -12.28154 -11.87478 -11.80263 -11.75581 -11.43501 -11.34002 -11.02428 -10.88717 -10.76391 -10.50247 -10.43965 -10.03319 -9.90312 -9.84076 -9.55818 -9.46681 -8.91279 -8.46248 -8.43650 -8.29622 -7.14791 -5.93116 -3.94069 0.92087 1.07987 2.59528 3.18098 3.36729 3.40018 3.42888 3.47815 3.71646 4.46908 4.49329 4.64949 4.68009 4.74805 4.80414 4.85401 4.86436 4.89994 4.97154 5.04276 5.20491 5.24574 5.27625 5.32249 5.38607 5.57475 5.61156 5.67602 5.80164 5.88417 5.92916 6.07446 6.08168 6.22151 6.40223 6.41600 6.51827 6.62448 6.88663 6.94697 7.02829 7.32130 7.33289 7.57290 7.64559 7.74536 7.94562 8.00049 8.33368 8.63494 8.68621 9.12314 9.69491 11.14045 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002399 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.424861 B =11669.124991 C =12909.760947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.036 3.964 15 C 0.116 3.884 16 H 0.114 0.886 17 O -0.549 6.549 18 C 0.038 3.962 19 O -0.299 6.299 20 C 0.032 3.968 21 C 0.148 3.852 22 O -0.298 6.298 23 C 0.025 3.975 24 C -0.237 4.237 25 C -0.047 4.047 26 C -0.237 4.237 27 C 0.148 3.852 28 O -0.299 6.299 29 C 0.025 3.975 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.009 0.991 34 H 0.092 0.908 35 H 0.258 0.742 36 H 0.334 0.666 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.366 0.634 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.104 0.896 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.691 2.009 25.877 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.095 4.095 15 C 0.056 3.944 16 H 0.132 0.868 17 O -0.353 6.353 18 C -0.037 4.037 19 O -0.215 6.215 20 C -0.014 4.014 21 C 0.102 3.898 22 O -0.211 6.211 23 C -0.070 4.070 24 C -0.256 4.256 25 C -0.066 4.066 26 C -0.256 4.256 27 C 0.101 3.899 28 O -0.211 6.211 29 C -0.070 4.070 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.153 0.847 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.211 0.789 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.122 0.878 49 H 0.075 0.925 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.410 3.255 25.076 26.648 hybrid contribution 0.385 -1.324 -0.093 1.382 sum 8.795 1.931 24.983 26.556 Atomic orbital electron populations 1.21601 0.97588 0.98628 1.00988 1.22100 0.95129 1.01120 1.00081 1.19238 0.95831 0.88608 0.85615 0.95137 1.21088 1.30337 1.11426 0.89634 0.91936 1.24917 0.95616 0.95179 0.98735 1.69888 1.39269 1.24049 1.20601 0.86563 0.79666 0.79501 0.82076 1.20848 1.21514 1.19884 1.60693 1.04029 1.63197 1.03090 1.22428 0.98405 0.96122 0.92543 1.22029 0.82164 1.00896 0.89264 0.86840 1.86640 1.33768 1.30185 1.84668 1.23562 0.99802 0.93547 0.86818 1.86261 1.45401 1.64333 1.25527 1.17089 0.93829 0.98906 0.91530 1.19068 0.87453 0.89363 0.93959 1.86217 1.42571 1.46936 1.45326 1.23129 1.03029 0.92185 0.88623 1.21073 0.98353 1.05688 1.00526 1.20703 0.95965 0.92864 0.97033 1.21086 1.02454 1.05414 0.96608 1.19095 0.92456 0.90206 0.88093 1.86222 1.46486 1.46229 1.42166 1.23143 0.87136 0.93040 1.03641 0.91216 0.95169 0.95838 0.97278 0.88965 0.93194 0.84659 0.96221 0.90854 0.78855 0.93123 0.92218 0.92614 0.92538 0.87898 0.84918 0.85225 0.84865 0.87784 0.92534 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.40 37.16 0.35 -2.51 16 2 C -0.14 -3.43 5.51 -26.73 -0.15 -3.58 16 3 C 0.21 5.39 2.33 -68.86 -0.16 5.23 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.49 -13.40 7.25 -34.44 -0.25 -13.65 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.59 11.38 55.43 0.63 -24.96 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.83 6.21 -107.94 -0.67 -15.50 16 14 C 0.04 0.65 5.18 -3.82 -0.02 0.63 16 15 C 0.12 1.92 3.49 -26.73 -0.09 1.83 16 16 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 17 O -0.55 -9.17 12.92 -40.09 -0.52 -9.69 16 18 C 0.04 0.57 5.70 37.16 0.21 0.78 16 19 O -0.30 -4.90 9.59 -48.24 -0.46 -5.37 16 20 C 0.03 0.46 5.75 -39.03 -0.22 0.23 16 21 C 0.15 1.82 6.70 -39.15 -0.26 1.56 16 22 O -0.30 -3.59 10.28 -34.31 -0.35 -3.94 16 23 C 0.03 0.18 9.81 101.05 0.99 1.17 16 24 C -0.24 -2.19 9.04 -39.43 -0.36 -2.55 16 25 C -0.05 -0.39 10.04 -39.59 -0.40 -0.79 16 26 C -0.24 -2.22 9.04 -39.42 -0.36 -2.57 16 27 C 0.15 1.85 6.70 -39.15 -0.26 1.59 16 28 O -0.30 -3.77 10.28 -34.31 -0.35 -4.12 16 29 C 0.03 0.19 9.81 101.05 0.99 1.19 16 30 H 0.07 1.67 6.85 -51.93 -0.36 1.32 16 31 H 0.03 0.60 6.63 -51.93 -0.34 0.25 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.19 7.50 -51.93 -0.39 -0.20 16 34 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.33 7.19 6.33 -39.30 -0.25 6.95 16 37 H 0.02 0.35 7.54 -51.93 -0.39 -0.05 16 38 H 0.07 1.35 7.92 -51.93 -0.41 0.94 16 39 H 0.37 4.88 9.05 45.56 0.41 5.29 16 40 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 43 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 44 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.13 0.87 6.29 -52.49 -0.33 0.54 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 50 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -33.01 404.55 -7.94 -40.94 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.21 Total: 9.87 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.08 Total: -9.99 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.04 Total: -40.46 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -1.69 Total: -23.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.01 -7.94 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576596150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.789 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds