Wall clock time and date at job start Tue Mar 31 2020 23:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47231 * 2 1 4 4 H 1.09000 * 109.47557 * 185.15990 * 3 2 1 5 5 C 1.50703 * 109.47055 * 305.16578 * 3 2 1 6 6 H 1.07992 * 120.00167 * 120.00136 * 5 3 2 7 7 C 1.37873 * 119.99759 * 299.99586 * 5 3 2 8 8 N 1.31520 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00105 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46920 * 89.99877 * 9 7 5 11 11 H 1.48501 * 109.46895 * 209.99939 * 9 7 5 12 12 H 1.48496 * 109.46623 * 330.00113 * 9 7 5 13 13 N 1.46909 * 109.46943 * 65.15967 * 3 2 1 14 14 C 1.46903 * 110.99429 * 85.92107 * 13 3 2 15 15 C 1.53007 * 109.46578 * 174.67825 * 14 13 3 16 16 H 1.08996 * 109.47084 * 304.99521 * 15 14 13 17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13 18 18 C 1.52997 * 109.46799 * 185.00008 * 15 14 13 19 19 O 1.42901 * 109.47200 * 175.00231 * 18 15 14 20 20 C 1.36099 * 117.00167 * 179.97438 * 19 18 15 21 21 C 1.38977 * 120.08703 * 269.72082 * 20 19 18 22 22 O 1.35994 * 120.04631 * 0.02562 * 21 20 19 23 23 C 1.42894 * 116.99965 * 179.97438 * 22 21 20 24 24 C 1.38669 * 119.90388 * 179.72259 * 21 20 19 25 25 C 1.38224 * 120.09271 * 0.55343 * 24 21 20 26 26 C 1.38233 * 120.17901 * 359.72264 * 25 24 21 27 27 C 1.38672 * 120.08686 * 0.02562 * 26 25 24 28 28 O 1.35996 * 120.04151 * 180.02562 * 27 26 25 29 29 C 1.42898 * 117.00281 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47195 * 54.84933 * 1 2 3 31 31 H 1.08998 * 109.47195 * 294.84762 * 1 2 3 32 32 H 1.09003 * 109.47166 * 174.85120 * 1 2 3 33 33 H 1.09002 * 109.47260 * 120.00008 * 2 1 3 34 34 H 1.08997 * 109.47448 * 240.00365 * 2 1 3 35 35 H 0.97001 * 119.99982 * 180.02562 * 8 7 5 36 36 H 1.00891 * 111.00094 * 321.96730 * 13 3 2 37 37 H 1.08994 * 109.46864 * 294.67155 * 14 13 3 38 38 H 1.08994 * 109.47486 * 54.67842 * 14 13 3 39 39 H 0.96702 * 113.99922 * 59.99758 * 17 15 14 40 40 H 1.09008 * 109.47321 * 294.99649 * 18 15 14 41 41 H 1.09001 * 109.47656 * 54.99761 * 18 15 14 42 42 H 1.08998 * 109.47066 * 299.99339 * 23 22 21 43 43 H 1.08998 * 109.47602 * 59.99796 * 23 22 21 44 44 H 1.09007 * 109.47017 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.95025 * 180.25839 * 24 21 20 46 46 H 1.07991 * 119.91243 * 179.74589 * 25 24 21 47 47 H 1.07999 * 119.95501 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.47633 * 180.02562 * 29 28 27 49 49 H 1.09003 * 109.47053 * 300.00313 * 29 28 27 50 50 H 1.08999 * 109.47212 * 59.99622 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4359 2.1889 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6915 -2.6675 9 14 0.9128 2.6816 -3.8910 10 1 1.8550 3.7359 -4.3450 11 1 0.6534 1.7359 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6546 2.0981 1.2569 14 6 2.6435 1.8370 2.3115 15 6 2.2798 2.6404 3.5618 16 1 2.1894 3.6952 3.3023 17 8 1.0360 2.1703 4.0850 18 6 3.3749 2.4667 4.6160 19 8 3.0945 3.3072 5.7371 20 6 3.9777 3.2720 6.7720 21 6 3.7956 2.3693 7.8130 22 8 2.7344 1.5190 7.7991 23 6 2.6105 0.6182 8.9014 24 6 4.7011 2.3328 8.8626 25 6 5.7771 3.2002 8.8803 26 6 5.9586 4.1033 7.8496 27 6 5.0606 4.1428 6.7937 28 8 5.2403 5.0313 5.7799 29 6 6.3755 5.8949 5.8677 30 1 -0.3633 0.5916 -0.8402 31 1 -0.3633 0.4318 0.9325 32 1 -0.3634 -1.0235 -0.0922 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 2.5610 0.3872 -3.5748 36 1 0.7322 1.8102 1.5469 37 1 2.6468 0.7737 2.5511 38 1 3.6328 2.1342 1.9636 39 1 1.0432 1.2369 4.3378 40 1 3.4052 1.4264 4.9404 41 1 4.3387 2.7418 4.1876 42 1 3.4944 -0.0175 8.9523 43 1 2.5181 1.1868 9.8267 44 1 1.7241 -0.0017 8.7662 45 1 4.5626 1.6288 9.6699 46 1 6.4782 3.1720 9.7012 47 1 6.8004 4.7797 7.8673 48 1 6.4004 6.5519 4.9984 49 1 6.3059 6.4954 6.7747 50 1 7.2859 5.2963 5.8974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576596150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:05 Heat of formation + Delta-G solvation = -156.701906 kcal Electronic energy + Delta-G solvation = -30088.174561 eV Core-core repulsion = 25888.010014 eV Total energy + Delta-G solvation = -4200.164547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75960 -39.99070 -39.68020 -38.46818 -37.43884 -37.07774 -34.38047 -32.74172 -31.58032 -30.60241 -30.24631 -28.68983 -28.32052 -27.50146 -25.83801 -24.89140 -23.34881 -22.87791 -22.62283 -21.20342 -19.84643 -18.60160 -18.15867 -18.13026 -17.70383 -17.45857 -17.09849 -16.91455 -16.74869 -16.43890 -15.99055 -15.80589 -15.73346 -15.64464 -15.00251 -14.95645 -14.54870 -14.34000 -14.07285 -13.88559 -13.61723 -13.58405 -13.28312 -13.11183 -12.96346 -12.82064 -12.66376 -12.45128 -12.43892 -12.39799 -12.06163 -11.96734 -11.79016 -11.71112 -11.67113 -11.43075 -11.15789 -10.92840 -10.78711 -10.42495 -9.30016 -9.18873 -8.92911 -8.05367 -6.13347 0.13380 0.32667 1.43119 1.44267 1.54730 1.90355 2.31258 2.46835 2.72576 2.78658 3.23282 3.46690 3.60782 3.88542 3.97307 4.03306 4.06307 4.11035 4.16013 4.24106 4.34944 4.37814 4.38845 4.39861 4.41086 4.41598 4.54331 4.55851 4.61547 4.69225 4.72908 4.75270 4.79826 5.07478 5.11731 5.16178 5.16395 5.36963 5.37340 5.43055 5.45164 5.71374 5.74876 5.83937 6.08067 6.32288 6.32403 6.67342 6.71176 6.81519 6.87197 6.99410 7.54265 9.00113 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002399 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.424861 B =11669.124991 C =12909.760947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.686 5.686 14 C 0.042 3.958 15 C 0.131 3.869 16 H 0.091 0.909 17 O -0.561 6.561 18 C 0.050 3.950 19 O -0.323 6.323 20 C -0.015 4.015 21 C 0.136 3.864 22 O -0.328 6.328 23 C 0.017 3.983 24 C -0.235 4.235 25 C -0.037 4.037 26 C -0.236 4.236 27 C 0.132 3.868 28 O -0.332 6.332 29 C 0.017 3.983 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.259 0.741 36 H 0.337 0.663 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.381 0.619 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.160 0.840 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 1.688 28.223 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.318 5.318 14 C -0.088 4.088 15 C 0.071 3.929 16 H 0.109 0.891 17 O -0.367 6.367 18 C -0.026 4.026 19 O -0.240 6.240 20 C -0.060 4.060 21 C 0.089 3.911 22 O -0.241 6.241 23 C -0.077 4.077 24 C -0.254 4.254 25 C -0.055 4.055 26 C -0.254 4.254 27 C 0.085 3.915 28 O -0.246 6.246 29 C -0.077 4.077 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.157 0.843 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.229 0.771 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.179 0.821 46 H 0.187 0.813 47 H 0.178 0.822 48 H 0.129 0.871 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.146 2.928 27.450 29.081 hybrid contribution 0.217 -1.225 -0.688 1.422 sum 9.363 1.703 26.761 28.403 Atomic orbital electron populations 1.21485 0.95983 0.99633 1.00826 1.21943 0.96484 0.99822 0.99459 1.19000 0.93643 0.89581 0.86549 0.98355 1.21284 1.30399 1.11333 0.90962 0.93230 1.25581 0.95958 0.95902 1.00955 1.70007 1.40014 1.25016 1.21053 0.85656 0.78935 0.78406 0.79228 1.20575 1.20915 1.19553 1.60554 1.04923 1.63163 1.03133 1.22397 0.97093 0.97194 0.92155 1.21698 0.82816 0.99225 0.89141 0.89063 1.86596 1.33759 1.31670 1.84644 1.23327 0.98609 0.94058 0.86609 1.86196 1.46798 1.64717 1.26256 1.17591 0.95215 1.01380 0.91841 1.19267 0.88192 0.89324 0.94329 1.86167 1.42854 1.47625 1.47447 1.23417 1.04343 0.91999 0.87977 1.21442 0.97651 1.06127 1.00161 1.21218 0.95790 0.91198 0.97287 1.21438 1.02323 1.05919 0.95753 1.19340 0.92898 0.90191 0.89060 1.86167 1.48452 1.46961 1.42990 1.23410 0.86421 0.92992 1.04876 0.93705 0.93381 0.93752 0.95462 0.91883 0.93160 0.84320 0.94842 0.91526 0.77079 0.92208 0.92496 0.91063 0.91130 0.86798 0.82099 0.81302 0.82247 0.87106 0.90882 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.40 71.98 0.68 -4.55 16 2 C -0.14 -6.53 5.51 30.59 0.17 -6.36 16 3 C 0.22 11.31 2.33 44.17 0.10 11.41 16 4 H 0.00 -0.09 7.70 -2.39 -0.02 -0.10 16 5 C -0.50 -28.16 7.25 25.60 0.19 -27.97 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.79 5.28 84.65 0.45 1.24 16 8 N -0.92 -53.24 11.38 21.45 0.24 -52.99 16 9 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.69 -30.40 6.21 -495.42 -3.08 -33.48 16 14 C 0.04 1.55 5.18 86.30 0.45 1.99 16 15 C 0.13 4.44 3.49 30.60 0.11 4.55 16 16 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 17 O -0.56 -18.75 12.92 -144.34 -1.86 -20.61 16 18 C 0.05 1.53 5.70 71.98 0.41 1.94 16 19 O -0.32 -11.02 9.59 -67.72 -0.65 -11.67 16 20 C -0.02 -0.44 5.75 22.62 0.13 -0.31 16 21 C 0.14 3.23 6.70 22.55 0.15 3.38 16 22 O -0.33 -7.72 10.28 -79.54 -0.82 -8.53 16 23 C 0.02 0.20 9.81 113.37 1.11 1.32 16 24 C -0.24 -3.73 9.04 22.37 0.20 -3.53 16 25 C -0.04 -0.49 10.04 22.27 0.22 -0.26 16 26 C -0.24 -3.90 9.04 22.37 0.20 -3.69 16 27 C 0.13 3.27 6.70 22.55 0.15 3.42 16 28 O -0.33 -8.55 10.28 -79.56 -0.82 -9.37 16 29 C 0.02 0.25 9.81 113.37 1.11 1.36 16 30 H 0.04 2.13 6.85 -2.39 -0.02 2.12 16 31 H 0.05 1.86 6.63 -2.39 -0.02 1.84 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16 34 H 0.06 3.39 6.22 -2.39 -0.01 3.37 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.34 14.47 6.33 -89.70 -0.57 13.91 16 37 H 0.03 1.15 7.54 -2.39 -0.02 1.13 16 38 H 0.07 2.54 7.92 -2.39 -0.02 2.52 16 39 H 0.38 9.91 9.05 -74.06 -0.67 9.24 16 40 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 0.63 7.65 -2.39 -0.02 0.61 16 43 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 44 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.16 1.52 6.29 -2.91 -0.02 1.50 16 46 H 0.17 0.87 8.06 -2.92 -0.02 0.85 16 47 H 0.16 1.66 6.29 -2.91 -0.02 1.64 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 50 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 Total: -1.00 -73.63 404.55 0.59 -73.04 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.28 Total: 32.83 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 5.83 Total: -16.08 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.83 Total: -86.47 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -4.15 Total: -50.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.63 0.59 -73.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576596150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.665 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds