Wall clock time and date at job start Tue Mar 31 2020 23:33:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47231 * 2 1
4 4 H 1.09000 * 109.47557 * 185.15990 * 3 2 1
5 5 C 1.50703 * 109.47055 * 305.16578 * 3 2 1
6 6 H 1.07992 * 120.00167 * 120.00136 * 5 3 2
7 7 C 1.37873 * 119.99759 * 299.99586 * 5 3 2
8 8 N 1.31520 * 120.00161 * 0.02562 * 7 5 3
9 9 Si 1.86808 * 120.00105 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.46920 * 89.99877 * 9 7 5
11 11 H 1.48501 * 109.46895 * 209.99939 * 9 7 5
12 12 H 1.48496 * 109.46623 * 330.00113 * 9 7 5
13 13 N 1.46909 * 109.46943 * 65.15967 * 3 2 1
14 14 C 1.46903 * 110.99429 * 85.92107 * 13 3 2
15 15 C 1.53007 * 109.46578 * 174.67825 * 14 13 3
16 16 H 1.08996 * 109.47084 * 304.99521 * 15 14 13
17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13
18 18 C 1.52997 * 109.46799 * 185.00008 * 15 14 13
19 19 O 1.42901 * 109.47200 * 175.00231 * 18 15 14
20 20 C 1.36099 * 117.00167 * 179.97438 * 19 18 15
21 21 C 1.38977 * 120.08703 * 269.72082 * 20 19 18
22 22 O 1.35994 * 120.04631 * 0.02562 * 21 20 19
23 23 C 1.42894 * 116.99965 * 179.97438 * 22 21 20
24 24 C 1.38669 * 119.90388 * 179.72259 * 21 20 19
25 25 C 1.38224 * 120.09271 * 0.55343 * 24 21 20
26 26 C 1.38233 * 120.17901 * 359.72264 * 25 24 21
27 27 C 1.38672 * 120.08686 * 0.02562 * 26 25 24
28 28 O 1.35996 * 120.04151 * 180.02562 * 27 26 25
29 29 C 1.42898 * 117.00281 * 359.97438 * 28 27 26
30 30 H 1.08996 * 109.47195 * 54.84933 * 1 2 3
31 31 H 1.08998 * 109.47195 * 294.84762 * 1 2 3
32 32 H 1.09003 * 109.47166 * 174.85120 * 1 2 3
33 33 H 1.09002 * 109.47260 * 120.00008 * 2 1 3
34 34 H 1.08997 * 109.47448 * 240.00365 * 2 1 3
35 35 H 0.97001 * 119.99982 * 180.02562 * 8 7 5
36 36 H 1.00891 * 111.00094 * 321.96730 * 13 3 2
37 37 H 1.08994 * 109.46864 * 294.67155 * 14 13 3
38 38 H 1.08994 * 109.47486 * 54.67842 * 14 13 3
39 39 H 0.96702 * 113.99922 * 59.99758 * 17 15 14
40 40 H 1.09008 * 109.47321 * 294.99649 * 18 15 14
41 41 H 1.09001 * 109.47656 * 54.99761 * 18 15 14
42 42 H 1.08998 * 109.47066 * 299.99339 * 23 22 21
43 43 H 1.08998 * 109.47602 * 59.99796 * 23 22 21
44 44 H 1.09007 * 109.47017 * 179.97438 * 23 22 21
45 45 H 1.08001 * 119.95025 * 180.25839 * 24 21 20
46 46 H 1.07991 * 119.91243 * 179.74589 * 25 24 21
47 47 H 1.07999 * 119.95501 * 179.97438 * 26 25 24
48 48 H 1.08997 * 109.47633 * 180.02562 * 29 28 27
49 49 H 1.09003 * 109.47053 * 300.00313 * 29 28 27
50 50 H 1.08999 * 109.47212 * 59.99622 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1261 1.4439 -0.0924
5 6 1.4359 2.1889 -1.1615
6 1 0.8269 3.0628 -0.9838
7 6 1.6610 1.7560 -2.4511
8 7 2.4024 0.6915 -2.6675
9 14 0.9128 2.6816 -3.8910
10 1 1.8550 3.7359 -4.3450
11 1 0.6534 1.7359 -5.0061
12 1 -0.3645 3.3087 -3.4662
13 7 1.6546 2.0981 1.2569
14 6 2.6435 1.8370 2.3115
15 6 2.2798 2.6404 3.5618
16 1 2.1894 3.6952 3.3023
17 8 1.0360 2.1703 4.0850
18 6 3.3749 2.4667 4.6160
19 8 3.0945 3.3072 5.7371
20 6 3.9777 3.2720 6.7720
21 6 3.7956 2.3693 7.8130
22 8 2.7344 1.5190 7.7991
23 6 2.6105 0.6182 8.9014
24 6 4.7011 2.3328 8.8626
25 6 5.7771 3.2002 8.8803
26 6 5.9586 4.1033 7.8496
27 6 5.0606 4.1428 6.7937
28 8 5.2403 5.0313 5.7799
29 6 6.3755 5.8949 5.8677
30 1 -0.3633 0.5916 -0.8402
31 1 -0.3633 0.4318 0.9325
32 1 -0.3634 -1.0235 -0.0922
33 1 1.8933 -0.5138 0.8900
34 1 1.8933 -0.5137 -0.8900
35 1 2.5610 0.3872 -3.5748
36 1 0.7322 1.8102 1.5469
37 1 2.6468 0.7737 2.5511
38 1 3.6328 2.1342 1.9636
39 1 1.0432 1.2369 4.3378
40 1 3.4052 1.4264 4.9404
41 1 4.3387 2.7418 4.1876
42 1 3.4944 -0.0175 8.9523
43 1 2.5181 1.1868 9.8267
44 1 1.7241 -0.0017 8.7662
45 1 4.5626 1.6288 9.6699
46 1 6.4782 3.1720 9.7012
47 1 6.8004 4.7797 7.8673
48 1 6.4004 6.5519 4.9984
49 1 6.3059 6.4954 6.7747
50 1 7.2859 5.2963 5.8974
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000576596150.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:33:05
Heat of formation + Delta-G solvation = -156.701906 kcal
Electronic energy + Delta-G solvation = -30088.174561 eV
Core-core repulsion = 25888.010014 eV
Total energy + Delta-G solvation = -4200.164547 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.75960 -39.99070 -39.68020 -38.46818 -37.43884 -37.07774 -34.38047 -32.74172
-31.58032 -30.60241 -30.24631 -28.68983 -28.32052 -27.50146 -25.83801 -24.89140
-23.34881 -22.87791 -22.62283 -21.20342 -19.84643 -18.60160 -18.15867 -18.13026
-17.70383 -17.45857 -17.09849 -16.91455 -16.74869 -16.43890 -15.99055 -15.80589
-15.73346 -15.64464 -15.00251 -14.95645 -14.54870 -14.34000 -14.07285 -13.88559
-13.61723 -13.58405 -13.28312 -13.11183 -12.96346 -12.82064 -12.66376 -12.45128
-12.43892 -12.39799 -12.06163 -11.96734 -11.79016 -11.71112 -11.67113 -11.43075
-11.15789 -10.92840 -10.78711 -10.42495 -9.30016 -9.18873 -8.92911 -8.05367
-6.13347 0.13380 0.32667 1.43119 1.44267 1.54730 1.90355 2.31258
2.46835 2.72576 2.78658 3.23282 3.46690 3.60782 3.88542 3.97307
4.03306 4.06307 4.11035 4.16013 4.24106 4.34944 4.37814 4.38845
4.39861 4.41086 4.41598 4.54331 4.55851 4.61547 4.69225 4.72908
4.75270 4.79826 5.07478 5.11731 5.16178 5.16395 5.36963 5.37340
5.43055 5.45164 5.71374 5.74876 5.83937 6.08067 6.32288 6.32403
6.67342 6.71176 6.81519 6.87197 6.99410 7.54265 9.00113
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.015714 B = 0.002399 C = 0.002168
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1781.424861 B =11669.124991 C =12909.760947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.137 4.137
3 C 0.221 3.779
4 H -0.001 1.001
5 C -0.501 4.501
6 H 0.049 0.951
7 C 0.014 3.986
8 N -0.920 5.920
9 Si 0.951 3.049
10 H -0.280 1.280
11 H -0.283 1.283
12 H -0.271 1.271
13 N -0.686 5.686
14 C 0.042 3.958
15 C 0.131 3.869
16 H 0.091 0.909
17 O -0.561 6.561
18 C 0.050 3.950
19 O -0.323 6.323
20 C -0.015 4.015
21 C 0.136 3.864
22 O -0.328 6.328
23 C 0.017 3.983
24 C -0.235 4.235
25 C -0.037 4.037
26 C -0.236 4.236
27 C 0.132 3.868
28 O -0.332 6.332
29 C 0.017 3.983
30 H 0.044 0.956
31 H 0.047 0.953
32 H 0.043 0.957
33 H 0.027 0.973
34 H 0.063 0.937
35 H 0.259 0.741
36 H 0.337 0.663
37 H 0.034 0.966
38 H 0.066 0.934
39 H 0.381 0.619
40 H 0.060 0.940
41 H 0.057 0.943
42 H 0.071 0.929
43 H 0.070 0.930
44 H 0.114 0.886
45 H 0.162 0.838
46 H 0.170 0.830
47 H 0.160 0.840
48 H 0.111 0.889
49 H 0.073 0.927
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.424 1.688 28.223 29.802
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.177 4.177
3 C 0.112 3.888
4 H 0.016 0.984
5 C -0.540 4.540
6 H 0.068 0.932
7 C -0.184 4.184
8 N -0.561 5.561
9 Si 0.778 3.222
10 H -0.206 1.206
11 H -0.209 1.209
12 H -0.196 1.196
13 N -0.318 5.318
14 C -0.088 4.088
15 C 0.071 3.929
16 H 0.109 0.891
17 O -0.367 6.367
18 C -0.026 4.026
19 O -0.240 6.240
20 C -0.060 4.060
21 C 0.089 3.911
22 O -0.241 6.241
23 C -0.077 4.077
24 C -0.254 4.254
25 C -0.055 4.055
26 C -0.254 4.254
27 C 0.085 3.915
28 O -0.246 6.246
29 C -0.077 4.077
30 H 0.063 0.937
31 H 0.066 0.934
32 H 0.062 0.938
33 H 0.045 0.955
34 H 0.081 0.919
35 H 0.068 0.932
36 H 0.157 0.843
37 H 0.052 0.948
38 H 0.085 0.915
39 H 0.229 0.771
40 H 0.078 0.922
41 H 0.075 0.925
42 H 0.089 0.911
43 H 0.089 0.911
44 H 0.132 0.868
45 H 0.179 0.821
46 H 0.187 0.813
47 H 0.178 0.822
48 H 0.129 0.871
49 H 0.091 0.909
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 9.146 2.928 27.450 29.081
hybrid contribution 0.217 -1.225 -0.688 1.422
sum 9.363 1.703 26.761 28.403
Atomic orbital electron populations
1.21485 0.95983 0.99633 1.00826 1.21943 0.96484 0.99822 0.99459
1.19000 0.93643 0.89581 0.86549 0.98355 1.21284 1.30399 1.11333
0.90962 0.93230 1.25581 0.95958 0.95902 1.00955 1.70007 1.40014
1.25016 1.21053 0.85656 0.78935 0.78406 0.79228 1.20575 1.20915
1.19553 1.60554 1.04923 1.63163 1.03133 1.22397 0.97093 0.97194
0.92155 1.21698 0.82816 0.99225 0.89141 0.89063 1.86596 1.33759
1.31670 1.84644 1.23327 0.98609 0.94058 0.86609 1.86196 1.46798
1.64717 1.26256 1.17591 0.95215 1.01380 0.91841 1.19267 0.88192
0.89324 0.94329 1.86167 1.42854 1.47625 1.47447 1.23417 1.04343
0.91999 0.87977 1.21442 0.97651 1.06127 1.00161 1.21218 0.95790
0.91198 0.97287 1.21438 1.02323 1.05919 0.95753 1.19340 0.92898
0.90191 0.89060 1.86167 1.48452 1.46961 1.42990 1.23410 0.86421
0.92992 1.04876 0.93705 0.93381 0.93752 0.95462 0.91883 0.93160
0.84320 0.94842 0.91526 0.77079 0.92208 0.92496 0.91063 0.91130
0.86798 0.82099 0.81302 0.82247 0.87106 0.90882 0.91004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.23 9.40 71.98 0.68 -4.55 16
2 C -0.14 -6.53 5.51 30.59 0.17 -6.36 16
3 C 0.22 11.31 2.33 44.17 0.10 11.41 16
4 H 0.00 -0.09 7.70 -2.39 -0.02 -0.10 16
5 C -0.50 -28.16 7.25 25.60 0.19 -27.97 16
6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16
7 C 0.01 0.79 5.28 84.65 0.45 1.24 16
8 N -0.92 -53.24 11.38 21.45 0.24 -52.99 16
9 Si 0.95 44.84 29.54 68.60 2.03 46.86 16
10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
13 N -0.69 -30.40 6.21 -495.42 -3.08 -33.48 16
14 C 0.04 1.55 5.18 86.30 0.45 1.99 16
15 C 0.13 4.44 3.49 30.60 0.11 4.55 16
16 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16
17 O -0.56 -18.75 12.92 -144.34 -1.86 -20.61 16
18 C 0.05 1.53 5.70 71.98 0.41 1.94 16
19 O -0.32 -11.02 9.59 -67.72 -0.65 -11.67 16
20 C -0.02 -0.44 5.75 22.62 0.13 -0.31 16
21 C 0.14 3.23 6.70 22.55 0.15 3.38 16
22 O -0.33 -7.72 10.28 -79.54 -0.82 -8.53 16
23 C 0.02 0.20 9.81 113.37 1.11 1.32 16
24 C -0.24 -3.73 9.04 22.37 0.20 -3.53 16
25 C -0.04 -0.49 10.04 22.27 0.22 -0.26 16
26 C -0.24 -3.90 9.04 22.37 0.20 -3.69 16
27 C 0.13 3.27 6.70 22.55 0.15 3.42 16
28 O -0.33 -8.55 10.28 -79.56 -0.82 -9.37 16
29 C 0.02 0.25 9.81 113.37 1.11 1.36 16
30 H 0.04 2.13 6.85 -2.39 -0.02 2.12 16
31 H 0.05 1.86 6.63 -2.39 -0.02 1.84 16
32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16
34 H 0.06 3.39 6.22 -2.39 -0.01 3.37 16
35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16
36 H 0.34 14.47 6.33 -89.70 -0.57 13.91 16
37 H 0.03 1.15 7.54 -2.39 -0.02 1.13 16
38 H 0.07 2.54 7.92 -2.39 -0.02 2.52 16
39 H 0.38 9.91 9.05 -74.06 -0.67 9.24 16
40 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
42 H 0.07 0.63 7.65 -2.39 -0.02 0.61 16
43 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16
44 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16
45 H 0.16 1.52 6.29 -2.91 -0.02 1.50 16
46 H 0.17 0.87 8.06 -2.92 -0.02 0.85 16
47 H 0.16 1.66 6.29 -2.91 -0.02 1.64 16
48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16
50 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16
Total: -1.00 -73.63 404.55 0.59 -73.04
By element:
Atomic # 1 Polarization: 33.11 SS G_CDS: -0.28 Total: 32.83 kcal
Atomic # 6 Polarization: -21.91 SS G_CDS: 5.83 Total: -16.08 kcal
Atomic # 7 Polarization: -83.64 SS G_CDS: -2.83 Total: -86.47 kcal
Atomic # 8 Polarization: -46.03 SS G_CDS: -4.15 Total: -50.18 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -73.63 0.59 -73.04 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000576596150.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.665 kcal
(2) G-P(sol) polarization free energy of solvation -73.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.297 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds