Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33638 * 122.75458 * 2 1 4 4 S 1.76193 * 107.92748 * 180.02562 * 3 2 1 5 5 C 1.70970 * 90.28330 * 359.97438 * 4 3 2 6 6 C 1.50702 * 124.91591 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46878 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47180 * 299.97696 * 6 5 4 9 9 C 1.50703 * 109.46967 * 59.97544 * 6 5 4 10 10 O 1.21276 * 120.00366 * 325.92422 * 9 6 5 11 11 N 1.34779 * 119.99466 * 145.92401 * 9 6 5 12 12 C 1.46489 * 120.00653 * 4.64976 * 11 9 6 13 13 C 1.50696 * 109.47348 * 85.63928 * 12 11 9 14 14 H 1.07999 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00203 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47305 * 90.00143 * 17 15 13 19 19 H 1.48505 * 109.46962 * 210.00031 * 17 15 13 20 20 H 1.48501 * 109.47214 * 329.99844 * 17 15 13 21 21 C 1.46510 * 119.99640 * 184.64555 * 11 9 6 22 22 C 1.53003 * 109.46939 * 90.00054 * 21 11 9 23 23 C 1.53002 * 109.47001 * 179.97438 * 22 21 11 24 24 N 1.46899 * 109.47089 * 180.02562 * 23 22 21 25 25 C 1.46902 * 111.00140 * 66.04395 * 24 23 22 26 26 C 1.46891 * 110.99903 * 190.00185 * 24 23 22 27 27 N 1.29026 * 110.16913 * 359.73624 * 5 4 3 28 28 H 1.09007 * 109.46777 * 90.02344 * 1 2 3 29 29 H 1.08993 * 109.47715 * 210.02647 * 1 2 3 30 30 H 1.09000 * 109.47166 * 330.02972 * 1 2 3 31 31 H 1.08006 * 126.03397 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 181.97701 * 8 6 5 33 33 H 1.09003 * 109.46957 * 301.97663 * 8 6 5 34 34 H 1.09004 * 109.47330 * 61.97993 * 8 6 5 35 35 H 1.09002 * 109.47525 * 205.64693 * 12 11 9 36 36 H 1.09005 * 109.47010 * 325.64703 * 12 11 9 37 37 H 0.96999 * 120.00237 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46953 * 210.00205 * 21 11 9 39 39 H 1.08997 * 109.46893 * 330.00301 * 21 11 9 40 40 H 1.08999 * 109.47060 * 300.00257 * 22 21 11 41 41 H 1.09000 * 109.46676 * 60.00161 * 22 21 11 42 42 H 1.09001 * 109.46922 * 300.00170 * 23 22 21 43 43 H 1.08997 * 109.46861 * 60.00227 * 23 22 21 44 44 H 1.08996 * 109.46704 * 60.00065 * 25 24 23 45 45 H 1.08996 * 109.47468 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47291 * 300.00097 * 25 24 23 47 47 H 1.08997 * 109.47460 * 59.99756 * 26 24 23 48 48 H 1.09005 * 109.47509 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46986 * 299.99479 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9332 0.6730 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4834 -2.1272 0.0001 7 1 3.9386 -3.0712 0.0008 8 6 5.3626 -2.0467 -1.2495 9 6 5.3503 -2.0464 1.2302 10 8 5.6635 -0.9652 1.6815 11 7 5.7775 -3.1759 1.8287 12 6 5.4853 -4.4793 1.2273 13 6 6.5424 -4.8093 0.2053 14 1 7.3513 -4.1174 0.0223 15 6 6.4770 -5.9944 -0.4963 16 7 5.4918 -6.8367 -0.2739 17 14 7.7878 -6.4037 -1.7627 18 1 8.8969 -7.1414 -1.1064 19 1 7.1965 -7.2476 -2.8321 20 1 8.3119 -5.1475 -2.3565 21 6 6.5342 -3.1001 3.0810 22 6 5.5663 -3.1429 4.2652 23 6 6.3566 -3.0644 5.5729 24 7 5.4273 -3.1061 6.7099 25 6 4.7497 -4.4071 6.7885 26 6 6.1201 -2.7964 7.9676 27 7 2.2199 -1.1084 0.0060 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.8392 2.1308 -0.0004 32 1 6.0474 -2.8945 -1.2672 33 1 4.7328 -2.0697 -2.1389 34 1 5.9339 -1.1185 -1.2327 35 1 5.4790 -5.2445 2.0036 36 1 4.5096 -4.4453 0.7427 37 1 5.4455 -7.6703 -0.7677 38 1 7.2209 -3.9444 3.1422 39 1 7.1001 -2.1689 3.1077 40 1 4.8796 -2.2986 4.2038 41 1 5.0005 -4.0741 4.2383 42 1 7.0429 -3.9090 5.6339 43 1 6.9227 -2.1334 5.5999 44 1 5.4913 -5.1959 6.9142 45 1 4.0674 -4.4107 7.6385 46 1 4.1873 -4.5800 5.8710 47 1 6.5540 -1.7983 7.9072 48 1 5.4092 -2.8346 8.7930 49 1 6.9114 -3.5270 8.1360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596925494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = 5.720421 kcal Electronic energy + Delta-G solvation = -27990.318903 eV Core-core repulsion = 24272.243139 eV Total energy + Delta-G solvation = -3718.075764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89149 -39.07475 -37.60997 -35.27963 -33.99887 -32.82964 -31.54543 -30.60972 -27.62849 -27.43931 -27.39778 -26.13961 -24.94264 -23.25293 -23.04644 -21.55900 -20.59698 -19.44241 -18.52350 -17.13793 -16.54617 -16.47289 -15.88989 -15.45491 -15.25876 -14.94780 -14.68813 -14.54620 -14.42276 -14.01627 -13.80583 -13.37784 -13.13263 -12.75363 -12.65344 -12.45145 -12.40153 -12.26763 -12.13421 -11.84279 -11.70818 -11.67610 -11.58755 -11.40021 -11.22699 -11.17205 -11.04578 -10.97620 -10.89268 -10.63673 -10.29845 -10.07995 -9.77234 -9.34621 -9.28953 -8.80083 -8.57324 -8.36379 -8.34773 -7.78733 -6.22798 -4.30295 1.00872 1.74360 2.17760 3.01355 3.19550 3.25841 3.28046 3.32100 3.71214 4.03512 4.28097 4.42778 5.07109 5.09840 5.11351 5.14731 5.20742 5.29689 5.33263 5.39402 5.42061 5.54679 5.59562 5.64078 5.64992 5.68660 5.74428 5.77526 5.78680 5.84758 5.89129 5.99815 6.04330 6.13531 6.22350 6.33493 6.43887 6.48942 6.59624 6.71590 6.79050 7.03324 7.06363 7.16501 7.46408 7.71535 7.99796 8.07302 8.22686 8.72320 8.89892 9.36958 10.83843 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005869 B = 0.005121 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4770.078223 B = 5466.203570 C = 8991.128312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.064 3.936 3 C -0.296 4.296 4 S 0.177 5.823 5 C 0.073 3.927 6 C -0.034 4.034 7 H 0.129 0.871 8 C -0.141 4.141 9 C 0.527 3.473 10 O -0.564 6.564 11 N -0.587 5.587 12 C 0.234 3.766 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.122 3.878 22 C -0.129 4.129 23 C 0.060 3.940 24 N -0.549 5.549 25 C 0.021 3.979 26 C 0.025 3.975 27 N -0.478 5.478 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 9.778 6.044 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.436 4.436 4 S 0.434 5.566 5 C -0.204 4.204 6 C -0.059 4.059 7 H 0.146 0.854 8 C -0.199 4.199 9 C 0.313 3.687 10 O -0.444 6.444 11 N -0.316 5.316 12 C 0.114 3.886 13 C -0.577 4.577 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.002 4.002 22 C -0.168 4.168 23 C -0.069 4.069 24 N -0.273 5.273 25 C -0.127 4.127 26 C -0.123 4.123 27 N -0.193 5.193 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.187 0.813 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.994 10.508 6.165 12.545 hybrid contribution 0.297 -1.182 -0.525 1.327 sum -2.697 9.325 5.640 11.227 Atomic orbital electron populations 1.20305 0.87668 1.02975 1.02540 1.20197 0.97961 0.86728 1.02096 1.26936 0.97229 1.03565 1.15879 1.84091 1.04685 1.02486 1.65325 1.26604 0.93500 0.98208 1.02108 1.19869 0.93795 0.96215 0.96007 0.85375 1.21876 0.99765 1.04166 0.94112 1.19971 0.80464 0.84135 0.84134 1.90607 1.59428 1.28118 1.66278 1.48100 1.52868 1.08083 1.22561 1.19535 0.97117 0.78077 0.93841 1.21443 1.10507 1.04286 1.21453 0.91834 1.24924 0.95731 0.95907 0.97019 1.69916 1.30825 1.10263 1.41494 0.86567 0.81628 0.78662 0.81087 1.20556 1.21027 1.19601 1.21232 0.93643 1.02671 0.82663 1.21949 0.99155 1.02895 0.92803 1.22067 0.93667 1.00952 0.90179 1.61962 1.30804 1.31061 1.03427 1.22441 0.98476 0.88935 1.02862 1.22363 0.97458 1.00720 0.91766 1.66145 1.04471 1.31613 1.17071 0.90982 0.90743 0.91147 0.81292 0.87860 0.91859 0.92780 0.94397 0.94180 0.92424 0.90491 0.90731 0.91199 0.91651 0.94668 0.90762 0.95636 0.91759 0.90740 0.91459 0.91635 0.95846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.31 36.00 0.37 -0.50 16 2 C 0.06 0.99 6.74 -84.23 -0.57 0.42 16 3 C -0.30 -4.21 11.13 29.12 0.32 -3.88 16 4 S 0.18 2.86 21.40 -107.50 -2.30 0.56 16 5 C 0.07 1.36 5.92 -13.46 -0.08 1.28 16 6 C -0.03 -0.67 2.61 -92.92 -0.24 -0.91 16 7 H 0.13 2.66 5.82 -51.93 -0.30 2.35 16 8 C -0.14 -2.51 9.05 37.16 0.34 -2.18 16 9 C 0.53 10.83 6.64 -10.98 -0.07 10.76 16 10 O -0.56 -12.14 14.70 5.56 0.08 -12.06 16 11 N -0.59 -11.95 2.47 -175.06 -0.43 -12.38 16 12 C 0.23 5.31 4.98 -5.20 -0.03 5.29 16 13 C -0.54 -13.11 7.64 -34.44 -0.26 -13.37 16 14 H 0.06 1.56 7.56 -52.49 -0.40 1.17 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 17 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.12 2.16 5.42 -4.03 -0.02 2.14 16 22 C -0.13 -2.07 5.46 -26.73 -0.15 -2.21 16 23 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 24 N -0.55 -7.19 5.02 -251.27 -1.26 -8.45 16 25 C 0.02 0.25 9.32 60.07 0.56 0.81 16 26 C 0.03 0.27 9.57 60.06 0.57 0.84 16 27 N -0.48 -8.86 10.53 -8.06 -0.08 -8.95 16 28 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 31 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 32 H 0.10 2.03 6.01 -51.93 -0.31 1.71 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 35 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.04 0.96 5.85 -51.93 -0.30 0.66 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.07 1.33 7.36 -51.93 -0.38 0.94 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 42 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.07 0.97 8.06 -51.93 -0.42 0.56 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 46 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 47 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 48 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 407.09 15.07 6.13 6.13 Total: -1.00 -28.51 407.09 -9.76 -38.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.25 Total: 4.14 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.63 Total: 0.89 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -1.04 Total: -52.65 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.30 Total: 0.56 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.51 -9.76 -38.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.996 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds