Wall clock time and date at job start Tue Mar 31 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33638 * 122.75458 * 2 1 4 4 S 1.76193 * 107.92748 * 180.02562 * 3 2 1 5 5 C 1.70970 * 90.28330 * 359.97438 * 4 3 2 6 6 C 1.50702 * 124.91591 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46878 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47180 * 299.97696 * 6 5 4 9 9 C 1.50703 * 109.46967 * 59.97544 * 6 5 4 10 10 O 1.21276 * 120.00366 * 325.92422 * 9 6 5 11 11 N 1.34779 * 119.99466 * 145.92401 * 9 6 5 12 12 C 1.46489 * 120.00653 * 4.64976 * 11 9 6 13 13 C 1.50696 * 109.47348 * 85.63928 * 12 11 9 14 14 H 1.07999 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00203 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47305 * 90.00143 * 17 15 13 19 19 H 1.48505 * 109.46962 * 210.00031 * 17 15 13 20 20 H 1.48501 * 109.47214 * 329.99844 * 17 15 13 21 21 C 1.46510 * 119.99640 * 184.64555 * 11 9 6 22 22 C 1.53003 * 109.46939 * 90.00054 * 21 11 9 23 23 C 1.53002 * 109.47001 * 179.97438 * 22 21 11 24 24 N 1.46899 * 109.47089 * 180.02562 * 23 22 21 25 25 C 1.46902 * 111.00140 * 66.04395 * 24 23 22 26 26 C 1.46891 * 110.99903 * 190.00185 * 24 23 22 27 27 N 1.29026 * 110.16913 * 359.73624 * 5 4 3 28 28 H 1.09007 * 109.46777 * 90.02344 * 1 2 3 29 29 H 1.08993 * 109.47715 * 210.02647 * 1 2 3 30 30 H 1.09000 * 109.47166 * 330.02972 * 1 2 3 31 31 H 1.08006 * 126.03397 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 181.97701 * 8 6 5 33 33 H 1.09003 * 109.46957 * 301.97663 * 8 6 5 34 34 H 1.09004 * 109.47330 * 61.97993 * 8 6 5 35 35 H 1.09002 * 109.47525 * 205.64693 * 12 11 9 36 36 H 1.09005 * 109.47010 * 325.64703 * 12 11 9 37 37 H 0.96999 * 120.00237 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46953 * 210.00205 * 21 11 9 39 39 H 1.08997 * 109.46893 * 330.00301 * 21 11 9 40 40 H 1.08999 * 109.47060 * 300.00257 * 22 21 11 41 41 H 1.09000 * 109.46676 * 60.00161 * 22 21 11 42 42 H 1.09001 * 109.46922 * 300.00170 * 23 22 21 43 43 H 1.08997 * 109.46861 * 60.00227 * 23 22 21 44 44 H 1.08996 * 109.46704 * 60.00065 * 25 24 23 45 45 H 1.08996 * 109.47468 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47291 * 300.00097 * 25 24 23 47 47 H 1.08997 * 109.47460 * 59.99756 * 26 24 23 48 48 H 1.09005 * 109.47509 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46986 * 299.99479 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9332 0.6730 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4834 -2.1272 0.0001 7 1 3.9386 -3.0712 0.0008 8 6 5.3626 -2.0467 -1.2495 9 6 5.3503 -2.0464 1.2302 10 8 5.6635 -0.9652 1.6815 11 7 5.7775 -3.1759 1.8287 12 6 5.4853 -4.4793 1.2273 13 6 6.5424 -4.8093 0.2053 14 1 7.3513 -4.1174 0.0223 15 6 6.4770 -5.9944 -0.4963 16 7 5.4918 -6.8367 -0.2739 17 14 7.7878 -6.4037 -1.7627 18 1 8.8969 -7.1414 -1.1064 19 1 7.1965 -7.2476 -2.8321 20 1 8.3119 -5.1475 -2.3565 21 6 6.5342 -3.1001 3.0810 22 6 5.5663 -3.1429 4.2652 23 6 6.3566 -3.0644 5.5729 24 7 5.4273 -3.1061 6.7099 25 6 4.7497 -4.4071 6.7885 26 6 6.1201 -2.7964 7.9676 27 7 2.2199 -1.1084 0.0060 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.8392 2.1308 -0.0004 32 1 6.0474 -2.8945 -1.2672 33 1 4.7328 -2.0697 -2.1389 34 1 5.9339 -1.1185 -1.2327 35 1 5.4790 -5.2445 2.0036 36 1 4.5096 -4.4453 0.7427 37 1 5.4455 -7.6703 -0.7677 38 1 7.2209 -3.9444 3.1422 39 1 7.1001 -2.1689 3.1077 40 1 4.8796 -2.2986 4.2038 41 1 5.0005 -4.0741 4.2383 42 1 7.0429 -3.9090 5.6339 43 1 6.9227 -2.1334 5.5999 44 1 5.4913 -5.1959 6.9142 45 1 4.0674 -4.4107 7.6385 46 1 4.1873 -4.5800 5.8710 47 1 6.5540 -1.7983 7.9072 48 1 5.4092 -2.8346 8.7930 49 1 6.9114 -3.5270 8.1360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596925494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:02 Heat of formation + Delta-G solvation = -10.848139 kcal Electronic energy + Delta-G solvation = -27991.037370 eV Core-core repulsion = 24272.243139 eV Total energy + Delta-G solvation = -3718.794231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36192 -40.48478 -38.69579 -36.91635 -35.46126 -34.62702 -32.94402 -31.84209 -29.25250 -28.50769 -28.48094 -27.50588 -26.29980 -25.00843 -24.42492 -22.86078 -21.78740 -20.71458 -20.07570 -18.62157 -18.33107 -18.05747 -17.38472 -16.58495 -16.41343 -16.35323 -16.28019 -15.90761 -15.57916 -15.38707 -15.04133 -14.64557 -14.57841 -14.36331 -14.03309 -13.64734 -13.53101 -13.36041 -13.29797 -13.25152 -13.21185 -13.06821 -12.78073 -12.73398 -12.69155 -12.62134 -12.46852 -12.36989 -12.23555 -12.09191 -11.98261 -11.66950 -11.51241 -10.87851 -10.62437 -10.53186 -10.16266 -9.60590 -9.48200 -9.33466 -8.17873 -6.31257 -0.25681 0.49179 0.93403 1.43585 1.46407 1.54663 1.61378 1.80409 2.19346 2.44449 2.98773 3.11873 3.13744 3.59430 3.90159 3.94800 4.10261 4.12359 4.21433 4.23808 4.31979 4.38696 4.41102 4.43795 4.49937 4.59260 4.64938 4.72691 4.77450 4.77727 4.79789 4.80506 4.87652 4.91550 4.98594 4.99257 4.99983 5.11483 5.21226 5.25123 5.29244 5.40475 5.66176 5.81802 6.02585 6.06448 6.10270 6.49115 6.80836 6.82302 7.20744 7.40413 8.88318 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005869 B = 0.005121 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4770.078223 B = 5466.203570 C = 8991.128312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.040 3.960 3 C -0.274 4.274 4 S 0.184 5.816 5 C 0.041 3.959 6 C -0.030 4.030 7 H 0.105 0.895 8 C -0.132 4.132 9 C 0.524 3.476 10 O -0.574 6.574 11 N -0.591 5.591 12 C 0.251 3.749 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.025 3.975 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.121 3.879 22 C -0.114 4.114 23 C 0.067 3.933 24 N -0.566 5.566 25 C 0.022 3.978 26 C 0.025 3.975 27 N -0.503 5.503 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.029 0.971 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 11.461 6.311 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.414 4.414 4 S 0.440 5.560 5 C -0.236 4.236 6 C -0.055 4.055 7 H 0.123 0.877 8 C -0.191 4.191 9 C 0.311 3.689 10 O -0.455 6.455 11 N -0.320 5.320 12 C 0.130 3.870 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.189 1.189 21 C -0.002 4.002 22 C -0.153 4.153 23 C -0.061 4.061 24 N -0.291 5.291 25 C -0.126 4.126 26 C -0.122 4.122 27 N -0.219 5.219 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.226 0.774 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.934 12.197 6.450 14.106 hybrid contribution 0.206 -1.616 -0.558 1.722 sum -2.728 10.581 5.892 12.415 Atomic orbital electron populations 1.20425 0.84990 1.03966 1.03780 1.20813 0.99734 0.86279 1.02444 1.27388 0.95612 1.05023 1.13335 1.83953 1.06475 1.00701 1.64896 1.26388 0.93571 0.99070 1.04556 1.19717 0.93876 0.95982 0.95922 0.87724 1.21787 0.99447 1.03688 0.94147 1.20212 0.80368 0.83883 0.84428 1.90582 1.59987 1.28253 1.66722 1.48110 1.53194 1.07274 1.23415 1.19162 0.96096 0.78732 0.93006 1.21574 1.10361 1.04069 1.21434 0.92132 1.25597 0.97400 0.95849 0.98680 1.70019 1.32478 1.10732 1.42672 0.85655 0.79290 0.78516 0.78896 1.20251 1.21022 1.18860 1.21362 0.93881 1.02808 0.82181 1.21760 0.98482 1.01312 0.93730 1.21950 0.93407 1.01594 0.89184 1.61946 1.31210 1.31611 1.04296 1.22435 0.98689 0.88772 1.02722 1.22421 0.97877 1.01176 0.90751 1.66149 1.04849 1.33720 1.17208 0.89556 0.91655 0.88268 0.77363 0.89842 0.90504 0.91733 0.95926 0.95818 0.92418 0.90153 0.90545 0.93355 0.92653 0.93994 0.90059 0.95204 0.90100 0.92424 0.90911 0.90301 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.31 71.23 0.73 -0.77 16 2 C 0.04 1.17 6.74 41.52 0.28 1.45 16 3 C -0.27 -7.06 11.13 66.78 0.74 -6.32 16 4 S 0.18 5.72 21.40 -56.49 -1.21 4.51 16 5 C 0.04 1.53 5.92 88.52 0.52 2.05 16 6 C -0.03 -1.22 2.61 -12.29 -0.03 -1.25 16 7 H 0.10 4.62 5.82 -2.39 -0.01 4.60 16 8 C -0.13 -4.80 9.05 71.98 0.65 -4.14 16 9 C 0.52 22.12 6.64 87.66 0.58 22.71 16 10 O -0.57 -24.97 14.70 -3.02 -0.04 -25.01 16 11 N -0.59 -24.86 2.47 -826.15 -2.04 -26.90 16 12 C 0.25 11.86 4.98 85.63 0.43 12.29 16 13 C -0.54 -26.62 7.64 25.60 0.20 -26.43 16 14 H 0.06 3.01 7.56 -2.91 -0.02 2.99 16 15 C 0.03 1.29 5.46 84.65 0.46 1.75 16 16 N -0.92 -49.96 13.29 21.45 0.28 -49.68 16 17 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 C 0.12 4.36 5.42 86.38 0.47 4.83 16 22 C -0.11 -3.73 5.46 30.60 0.17 -3.57 16 23 C 0.07 1.79 4.96 86.30 0.43 2.22 16 24 N -0.57 -14.29 5.02 -948.86 -4.76 -19.05 16 25 C 0.02 0.51 9.32 127.69 1.19 1.70 16 26 C 0.03 0.49 9.57 127.69 1.22 1.71 16 27 N -0.50 -18.70 10.53 -179.41 -1.89 -20.59 16 28 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.47 8.12 -2.39 -0.02 1.45 16 31 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.08 3.34 6.01 -2.39 -0.01 3.33 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.16 8.00 -2.38 -0.02 2.14 16 35 H 0.02 1.13 8.04 -2.39 -0.02 1.11 16 36 H 0.02 1.21 5.85 -2.38 -0.01 1.20 16 37 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 39 H 0.08 2.73 7.36 -2.39 -0.02 2.72 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.91 6.55 -2.39 -0.02 1.89 16 42 H 0.04 1.06 8.12 -2.39 -0.02 1.05 16 43 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 46 H 0.06 1.53 6.47 -2.39 -0.02 1.51 16 47 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 48 H 0.08 1.29 8.12 -2.38 -0.02 1.27 16 49 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -61.78 407.09 1.34 -60.44 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.92 Total: 25.48 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 8.04 Total: 8.23 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -8.40 Total: -116.22 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.21 Total: 4.51 kcal Total: -61.78 1.34 -60.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.594 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds