Wall clock time and date at job start Tue Mar 31 2020 23:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47069 * 2 1 4 4 C 1.53006 * 109.46874 * 240.00271 * 2 1 3 5 5 O 1.45192 * 109.46714 * 120.00394 * 2 1 3 6 6 C 1.34232 * 117.00554 * 60.00221 * 5 2 1 7 7 O 1.20827 * 119.99487 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00271 * 179.97438 * 6 5 2 9 9 C 1.50701 * 112.85018 * 302.19311 * 8 6 5 10 10 O 1.21276 * 120.00130 * 115.12677 * 9 8 6 11 11 N 1.34776 * 119.99556 * 295.12435 * 9 8 6 12 12 C 1.47424 * 125.65275 * 354.81354 * 11 9 8 13 13 C 1.55383 * 104.87736 * 204.16503 * 12 11 9 14 14 C 1.55161 * 101.36808 * 323.01843 * 13 12 11 15 15 O 1.42901 * 110.71796 * 277.04413 * 14 13 12 16 16 C 1.50690 * 110.72160 * 153.94455 * 14 13 12 17 17 H 1.08008 * 120.00111 * 238.72530 * 16 14 13 18 18 C 1.37879 * 120.00498 * 58.72993 * 16 14 13 19 19 N 1.31509 * 119.99374 * 5.14628 * 18 16 14 20 20 Si 1.86792 * 120.00417 * 185.14753 * 18 16 14 21 21 H 1.48498 * 109.47287 * 94.99033 * 20 18 16 22 22 H 1.48496 * 109.47448 * 214.99317 * 20 18 16 23 23 H 1.48508 * 109.47046 * 334.99226 * 20 18 16 24 24 C 1.47022 * 125.64557 * 174.85377 * 11 9 8 25 25 C 1.53777 * 113.69104 * 73.45878 * 8 6 5 26 26 C 1.53778 * 87.08404 * 89.12499 * 25 8 6 27 27 C 1.53775 * 113.61394 * 170.99330 * 8 6 5 28 28 H 1.09000 * 109.46859 * 299.99668 * 1 2 3 29 29 H 1.08998 * 109.46830 * 59.99441 * 1 2 3 30 30 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47155 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47751 * 299.99995 * 3 2 1 33 33 H 1.09000 * 109.47009 * 60.00423 * 3 2 1 34 34 H 1.09005 * 109.46863 * 300.00256 * 4 2 1 35 35 H 1.08997 * 109.47078 * 59.99939 * 4 2 1 36 36 H 1.08999 * 109.46778 * 179.97438 * 4 2 1 37 37 H 1.09000 * 110.36439 * 323.00148 * 12 11 9 38 38 H 1.08996 * 110.36515 * 85.21335 * 12 11 9 39 39 H 1.08998 * 111.19624 * 204.97886 * 13 12 11 40 40 H 1.09007 * 111.02264 * 80.97902 * 13 12 11 41 41 H 0.96699 * 113.99358 * 296.15573 * 15 14 13 42 42 H 0.97002 * 120.00173 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.88280 * 59.48660 * 24 11 9 44 44 H 1.09005 * 109.88479 * 298.31949 * 24 11 9 45 45 H 1.08996 * 113.61728 * 203.68000 * 25 8 6 46 46 H 1.09007 * 113.61672 * 334.58021 * 25 8 6 47 47 H 1.08997 * 113.61718 * 270.88813 * 26 25 8 48 48 H 1.08996 * 113.61839 * 139.97858 * 26 25 8 49 49 H 1.08996 * 113.61565 * 25.35158 * 27 8 6 50 50 H 1.09007 * 113.61311 * 156.16749 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1182 -2.7439 2.5434 9 6 3.6194 -2.7867 2.6685 10 8 4.1650 -2.2517 3.6102 11 7 4.3556 -3.4198 1.7338 12 6 3.8216 -4.1997 0.6024 13 6 4.9591 -5.1900 0.2284 14 6 6.2172 -4.3111 0.4567 15 8 6.4738 -3.4896 -0.6841 16 6 7.4154 -5.1676 0.7750 17 1 7.9460 -5.0297 1.7056 18 6 7.8346 -6.1274 -0.1218 19 7 7.2530 -6.2279 -1.2970 20 14 9.2285 -7.2849 0.3325 21 1 8.6664 -8.5468 0.8775 22 1 10.0370 -7.5847 -0.8764 23 1 10.0903 -6.6435 1.3579 24 6 5.8243 -3.4476 1.6740 25 6 1.4027 -2.3484 3.8459 26 6 0.3506 -3.4152 3.4994 27 6 1.4486 -4.1208 2.6861 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.9285 -4.7457 0.9061 38 1 3.5967 -3.5433 -0.2381 39 1 4.8838 -5.5013 -0.8135 40 1 4.9600 -6.0537 0.8935 41 1 6.6884 -3.9860 -1.4858 42 1 7.5476 -6.9033 -1.9278 43 1 6.2242 -3.8896 2.5866 44 1 6.2096 -2.4354 1.5502 45 1 1.9753 -2.5757 4.7450 46 1 1.0117 -1.3309 3.8378 47 1 -0.4699 -3.0373 2.8895 48 1 0.0094 -3.9882 4.3615 49 1 1.0948 -4.5342 1.7416 50 1 2.0345 -4.8332 3.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597802115.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:17 Heat of formation + Delta-G solvation = -148.090838 kcal Electronic energy + Delta-G solvation = -32598.206148 eV Core-core repulsion = 28398.415006 eV Total energy + Delta-G solvation = -4199.791143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54693 -39.76490 -38.25393 -37.14913 -36.32141 -34.35750 -34.11640 -32.25112 -29.96327 -28.60780 -27.56127 -27.51535 -27.43957 -25.90843 -24.92805 -23.23502 -22.40636 -20.42522 -20.20712 -19.38694 -18.72731 -17.59539 -17.08613 -16.66631 -16.29236 -15.82011 -15.43822 -15.24683 -15.02360 -14.94714 -14.30234 -14.20099 -13.88853 -13.72230 -13.57518 -13.07608 -12.69035 -12.55503 -12.39168 -12.34230 -12.20192 -12.06990 -12.05447 -11.96666 -11.73376 -11.52444 -11.44242 -11.42446 -11.35142 -11.19148 -10.96978 -10.91328 -10.71920 -10.50464 -10.46714 -10.42752 -10.13594 -10.01734 -9.48892 -9.29680 -8.67713 -8.24851 -8.07901 -6.31751 -4.39054 2.07022 2.44296 2.93992 3.18027 3.26204 3.29632 3.39146 4.24603 4.28810 4.34592 4.49040 4.59957 4.61777 4.66389 4.73142 4.81022 4.96888 5.18177 5.34919 5.45456 5.50212 5.54629 5.54813 5.62526 5.65136 5.69728 5.73566 5.77338 5.77769 5.81479 5.86106 5.89099 5.91826 6.00941 6.10650 6.16036 6.21253 6.28518 6.41233 6.47635 6.64180 6.87395 6.91306 7.26623 7.33149 7.70488 7.75471 7.98493 8.00641 8.46715 8.64105 9.27087 9.38265 10.75907 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003784 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.706824 B = 7396.871888 C = 8229.139603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.116 3.884 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.340 6.340 6 C 0.504 3.496 7 O -0.491 6.491 8 C -0.109 4.109 9 C 0.545 3.455 10 O -0.538 6.538 11 N -0.601 5.601 12 C 0.091 3.909 13 C -0.132 4.132 14 C 0.248 3.752 15 O -0.586 6.586 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.123 3.877 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.171 7.799 2.623 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.080 3.920 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.257 6.257 6 C 0.346 3.654 7 O -0.379 6.379 8 C -0.113 4.113 9 C 0.331 3.669 10 O -0.416 6.416 11 N -0.333 5.333 12 C -0.032 4.032 13 C -0.170 4.170 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.002 3.998 25 C -0.138 4.138 26 C -0.180 4.180 27 C -0.149 4.149 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.112 0.888 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.235 8.384 3.145 17.672 hybrid contribution 0.859 -1.116 -0.538 1.507 sum -14.377 7.268 2.607 16.319 Atomic orbital electron populations 1.22490 0.94085 1.04651 1.02622 1.22246 0.94215 0.92435 0.83112 1.21847 1.02701 0.92430 1.02818 1.22502 1.02491 1.02960 0.96197 1.86592 1.69375 1.24722 1.44996 1.22194 0.76901 0.80687 0.85641 1.90559 1.35225 1.69931 1.42150 1.21934 0.94674 0.99481 0.95248 1.19181 0.86719 0.78876 0.82154 1.90670 1.72385 1.46665 1.31849 1.48605 1.08533 1.49934 1.26236 1.22715 0.98293 0.94147 0.88037 1.23355 0.94163 0.96824 1.02688 1.19468 0.91851 0.85604 0.82341 1.86124 1.92461 1.38812 1.22143 1.21517 1.13309 1.17634 1.05017 0.91695 1.24980 0.96563 0.96855 0.94534 1.69694 1.42099 1.35069 1.06482 0.86408 0.81681 0.80752 0.78202 1.20488 1.21023 1.19637 1.22123 0.77302 1.00730 0.99688 1.22835 0.95942 1.00112 0.94862 1.22937 0.96795 0.97798 1.00471 1.22969 0.96579 0.92927 1.02382 0.92106 0.91001 0.89806 0.91182 0.90312 0.91556 0.89758 0.91057 0.91397 0.91617 0.92275 0.89291 0.91369 0.76665 0.92181 0.90712 0.92025 0.87484 0.90324 0.89743 0.90119 0.88812 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.12 1.45 1.13 -90.61 -0.10 1.35 16 3 C -0.14 -1.45 8.85 37.15 0.33 -1.12 16 4 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 5 O -0.34 -5.28 9.85 -39.26 -0.39 -5.67 16 6 C 0.50 7.79 5.28 36.00 0.19 7.98 16 7 O -0.49 -7.63 11.39 -18.75 -0.21 -7.84 16 8 C -0.11 -1.65 0.73 -156.01 -0.11 -1.77 16 9 C 0.54 10.43 6.77 -10.98 -0.07 10.35 16 10 O -0.54 -11.64 16.47 5.56 0.09 -11.55 16 11 N -0.60 -12.12 3.33 -170.22 -0.57 -12.69 16 12 C 0.09 1.72 6.07 -2.27 -0.01 1.71 16 13 C -0.13 -2.86 5.48 -24.32 -0.13 -2.99 16 14 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16 15 O -0.59 -14.67 13.08 -35.23 -0.46 -15.13 16 16 C -0.54 -13.90 8.21 -34.44 -0.28 -14.18 16 17 H 0.06 1.69 7.61 -52.48 -0.40 1.29 16 18 C 0.07 1.86 5.24 -17.82 -0.09 1.77 16 19 N -0.89 -22.70 10.68 55.43 0.59 -22.11 16 20 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.12 2.78 6.22 -3.06 -0.02 2.77 16 25 C -0.10 -1.24 6.89 -25.92 -0.18 -1.42 16 26 C -0.14 -1.48 7.81 -25.92 -0.20 -1.68 16 27 C -0.11 -1.41 5.47 -25.92 -0.14 -1.55 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.02 5.89 -51.93 -0.31 0.72 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.24 5.89 -51.93 -0.31 0.94 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.10 5.66 -51.93 -0.29 0.81 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 2.01 7.53 -51.93 -0.39 1.62 16 40 H 0.07 1.50 8.04 -51.92 -0.42 1.08 16 41 H 0.38 9.59 7.46 45.56 0.34 9.93 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.07 1.71 7.68 -51.93 -0.40 1.31 16 44 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 45 H 0.11 1.36 7.70 -51.93 -0.40 0.96 16 46 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 1.20 6.66 -51.93 -0.35 0.85 16 50 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -28.62 391.50 -7.90 -36.51 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -7.54 Total: 14.19 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.29 Total: 3.35 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.03 Total: -34.80 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.97 Total: -40.19 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.62 -7.90 -36.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597802115.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.577 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds