Wall clock time and date at job start Tue Mar 31 2020 23:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47069 * 2 1 4 4 C 1.53006 * 109.46874 * 240.00271 * 2 1 3 5 5 O 1.45192 * 109.46714 * 120.00394 * 2 1 3 6 6 C 1.34232 * 117.00554 * 60.00221 * 5 2 1 7 7 O 1.20827 * 119.99487 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00271 * 179.97438 * 6 5 2 9 9 C 1.50701 * 112.85018 * 302.19311 * 8 6 5 10 10 O 1.21276 * 120.00130 * 115.12677 * 9 8 6 11 11 N 1.34776 * 119.99556 * 295.12435 * 9 8 6 12 12 C 1.47424 * 125.65275 * 354.81354 * 11 9 8 13 13 C 1.55383 * 104.87736 * 204.16503 * 12 11 9 14 14 C 1.55161 * 101.36808 * 323.01843 * 13 12 11 15 15 O 1.42901 * 110.71796 * 277.04413 * 14 13 12 16 16 C 1.50690 * 110.72160 * 153.94455 * 14 13 12 17 17 H 1.08008 * 120.00111 * 238.72530 * 16 14 13 18 18 C 1.37879 * 120.00498 * 58.72993 * 16 14 13 19 19 N 1.31509 * 119.99374 * 5.14628 * 18 16 14 20 20 Si 1.86792 * 120.00417 * 185.14753 * 18 16 14 21 21 H 1.48498 * 109.47287 * 94.99033 * 20 18 16 22 22 H 1.48496 * 109.47448 * 214.99317 * 20 18 16 23 23 H 1.48508 * 109.47046 * 334.99226 * 20 18 16 24 24 C 1.47022 * 125.64557 * 174.85377 * 11 9 8 25 25 C 1.53777 * 113.69104 * 73.45878 * 8 6 5 26 26 C 1.53778 * 87.08404 * 89.12499 * 25 8 6 27 27 C 1.53775 * 113.61394 * 170.99330 * 8 6 5 28 28 H 1.09000 * 109.46859 * 299.99668 * 1 2 3 29 29 H 1.08998 * 109.46830 * 59.99441 * 1 2 3 30 30 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47155 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47751 * 299.99995 * 3 2 1 33 33 H 1.09000 * 109.47009 * 60.00423 * 3 2 1 34 34 H 1.09005 * 109.46863 * 300.00256 * 4 2 1 35 35 H 1.08997 * 109.47078 * 59.99939 * 4 2 1 36 36 H 1.08999 * 109.46778 * 179.97438 * 4 2 1 37 37 H 1.09000 * 110.36439 * 323.00148 * 12 11 9 38 38 H 1.08996 * 110.36515 * 85.21335 * 12 11 9 39 39 H 1.08998 * 111.19624 * 204.97886 * 13 12 11 40 40 H 1.09007 * 111.02264 * 80.97902 * 13 12 11 41 41 H 0.96699 * 113.99358 * 296.15573 * 15 14 13 42 42 H 0.97002 * 120.00173 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.88280 * 59.48660 * 24 11 9 44 44 H 1.09005 * 109.88479 * 298.31949 * 24 11 9 45 45 H 1.08996 * 113.61728 * 203.68000 * 25 8 6 46 46 H 1.09007 * 113.61672 * 334.58021 * 25 8 6 47 47 H 1.08997 * 113.61718 * 270.88813 * 26 25 8 48 48 H 1.08996 * 113.61839 * 139.97858 * 26 25 8 49 49 H 1.08996 * 113.61565 * 25.35158 * 27 8 6 50 50 H 1.09007 * 113.61311 * 156.16749 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1182 -2.7439 2.5434 9 6 3.6194 -2.7867 2.6685 10 8 4.1650 -2.2517 3.6102 11 7 4.3556 -3.4198 1.7338 12 6 3.8216 -4.1997 0.6024 13 6 4.9591 -5.1900 0.2284 14 6 6.2172 -4.3111 0.4567 15 8 6.4738 -3.4896 -0.6841 16 6 7.4154 -5.1676 0.7750 17 1 7.9460 -5.0297 1.7056 18 6 7.8346 -6.1274 -0.1218 19 7 7.2530 -6.2279 -1.2970 20 14 9.2285 -7.2849 0.3325 21 1 8.6664 -8.5468 0.8775 22 1 10.0370 -7.5847 -0.8764 23 1 10.0903 -6.6435 1.3579 24 6 5.8243 -3.4476 1.6740 25 6 1.4027 -2.3484 3.8459 26 6 0.3506 -3.4152 3.4994 27 6 1.4486 -4.1208 2.6861 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.9285 -4.7457 0.9061 38 1 3.5967 -3.5433 -0.2381 39 1 4.8838 -5.5013 -0.8135 40 1 4.9600 -6.0537 0.8935 41 1 6.6884 -3.9860 -1.4858 42 1 7.5476 -6.9033 -1.9278 43 1 6.2242 -3.8896 2.5866 44 1 6.2096 -2.4354 1.5502 45 1 1.9753 -2.5757 4.7450 46 1 1.0117 -1.3309 3.8378 47 1 -0.4699 -3.0373 2.8895 48 1 0.0094 -3.9882 4.3615 49 1 1.0948 -4.5342 1.7416 50 1 2.0345 -4.8332 3.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597802115.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:16 Heat of formation + Delta-G solvation = -165.122522 kcal Electronic energy + Delta-G solvation = -32598.944698 eV Core-core repulsion = 28398.415006 eV Total energy + Delta-G solvation = -4200.529692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.73506 -41.12989 -39.69845 -38.65674 -37.50023 -36.18726 -35.12999 -34.24626 -31.69345 -30.30617 -28.90161 -28.41828 -28.35632 -27.12906 -26.52678 -24.55738 -23.84326 -21.85612 -21.42621 -20.98965 -19.93108 -19.25738 -18.79816 -17.74044 -17.45492 -17.24966 -16.98565 -16.90169 -16.47006 -16.18129 -16.02765 -15.33729 -15.20535 -14.95906 -14.87315 -14.65387 -13.99858 -13.92465 -13.69090 -13.62006 -13.39286 -13.32293 -13.22753 -13.21349 -13.06768 -12.98647 -12.92839 -12.67567 -12.58110 -12.53980 -12.48175 -12.29747 -12.26283 -12.05017 -11.87230 -11.53148 -11.46495 -11.33226 -11.11418 -10.84827 -10.61660 -10.19522 -9.77280 -8.26964 -6.41647 0.85018 1.23260 1.40882 1.44370 1.53366 1.60699 1.85114 2.38519 2.98352 3.18489 3.23162 3.38664 3.45226 3.67696 3.68306 3.74437 3.78414 3.88986 3.89739 4.17516 4.21277 4.30698 4.48213 4.51922 4.53978 4.57546 4.59391 4.71051 4.71616 4.73883 4.81111 4.82032 4.82938 4.87599 4.91005 4.99229 5.05955 5.08045 5.12443 5.22058 5.23944 5.28389 5.40200 5.42306 5.45183 5.72751 6.03717 6.39396 6.61530 6.62640 6.89149 7.27320 7.37861 8.79442 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003784 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.706824 B = 7396.871888 C = 8229.139603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.503 3.497 7 O -0.493 6.493 8 C -0.119 4.119 9 C 0.542 3.458 10 O -0.567 6.567 11 N -0.605 5.605 12 C 0.106 3.894 13 C -0.121 4.121 14 C 0.238 3.762 15 O -0.595 6.595 16 C -0.564 4.564 17 H 0.053 0.947 18 C 0.040 3.960 19 N -0.905 5.905 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.129 3.871 25 C -0.099 4.099 26 C -0.121 4.121 27 C -0.112 4.112 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.380 0.620 42 H 0.272 0.728 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.108 0.892 49 H 0.094 0.906 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 7.693 2.737 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.276 6.276 6 C 0.345 3.655 7 O -0.381 6.381 8 C -0.123 4.123 9 C 0.330 3.670 10 O -0.447 6.447 11 N -0.337 5.337 12 C -0.016 4.016 13 C -0.159 4.159 14 C 0.198 3.802 15 O -0.404 6.404 16 C -0.603 4.603 17 H 0.072 0.928 18 C -0.162 4.162 19 N -0.543 5.543 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.201 1.201 24 C 0.006 3.994 25 C -0.136 4.136 26 C -0.158 4.158 27 C -0.150 4.150 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.126 0.874 49 H 0.112 0.888 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.316 8.282 3.253 19.469 hybrid contribution 1.545 -1.015 -0.612 1.948 sum -15.771 7.266 2.641 17.564 Atomic orbital electron populations 1.22432 0.92245 1.04125 1.04286 1.22626 0.95740 0.93065 0.81749 1.21892 1.01695 0.91286 1.04637 1.22474 1.00890 1.02467 0.97999 1.86586 1.69786 1.24862 1.46405 1.22180 0.76956 0.80823 0.85534 1.90556 1.35481 1.70041 1.42027 1.22176 0.91372 1.01821 0.96970 1.19941 0.88456 0.77498 0.81056 1.90643 1.73565 1.47550 1.32926 1.48648 1.07437 1.50663 1.26942 1.22588 0.98152 0.93339 0.87561 1.23143 0.94084 0.96794 1.01927 1.19594 0.92450 0.85953 0.82235 1.86115 1.92599 1.39278 1.22358 1.21697 1.14514 1.18937 1.05103 0.92848 1.25579 0.98417 0.97752 0.94424 1.69753 1.42608 1.35215 1.06738 0.85523 0.79121 0.79010 0.77841 1.19766 1.20466 1.20113 1.21870 0.79281 0.99303 0.98912 1.22907 0.96176 1.01427 0.93137 1.22864 0.95675 0.96345 1.00892 1.23071 0.97187 0.91673 1.03022 0.91156 0.88622 0.91346 0.92812 0.87489 0.90731 0.91569 0.88338 0.93773 0.88804 0.92930 0.90279 0.91791 0.76980 0.91809 0.91472 0.93821 0.87863 0.89590 0.88996 0.87389 0.88758 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 8.37 71.99 0.60 -2.70 16 2 C 0.10 2.47 1.13 -10.79 -0.01 2.46 16 3 C -0.14 -2.63 8.85 71.98 0.64 -1.99 16 4 C -0.18 -4.64 8.37 71.98 0.60 -4.04 16 5 O -0.36 -11.00 9.85 -51.44 -0.51 -11.51 16 6 C 0.50 15.14 5.28 71.23 0.38 15.51 16 7 O -0.49 -14.77 11.39 21.96 0.25 -14.52 16 8 C -0.12 -3.50 0.73 -53.15 -0.04 -3.54 16 9 C 0.54 20.89 6.77 87.66 0.59 21.48 16 10 O -0.57 -24.98 16.47 -3.02 -0.05 -25.03 16 11 N -0.61 -24.80 3.33 -810.84 -2.70 -27.50 16 12 C 0.11 4.02 6.07 87.02 0.53 4.55 16 13 C -0.12 -5.30 5.48 32.15 0.18 -5.13 16 14 C 0.24 11.71 0.85 -10.35 -0.01 11.70 16 15 O -0.59 -30.68 13.08 -148.98 -1.95 -32.63 16 16 C -0.56 -29.88 8.21 25.60 0.21 -29.67 16 17 H 0.05 2.87 7.61 -2.91 -0.02 2.85 16 18 C 0.04 2.04 5.24 84.66 0.44 2.49 16 19 N -0.90 -45.95 10.68 21.45 0.23 -45.72 16 20 Si 0.96 41.04 29.54 68.60 2.03 43.06 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.13 6.06 6.22 86.73 0.54 6.60 16 25 C -0.10 -2.29 6.89 31.12 0.21 -2.07 16 26 C -0.12 -2.14 7.81 31.12 0.24 -1.90 16 27 C -0.11 -2.61 5.47 31.12 0.17 -2.44 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.54 5.89 -2.39 -0.01 1.52 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.93 5.89 -2.38 -0.01 1.92 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 3.04 5.66 -2.39 -0.01 3.03 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 3.62 7.53 -2.39 -0.02 3.60 16 40 H 0.06 2.83 8.04 -2.38 -0.02 2.81 16 41 H 0.38 19.59 7.46 -74.06 -0.55 19.04 16 42 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 43 H 0.07 3.21 7.68 -2.39 -0.02 3.19 16 44 H 0.04 2.16 8.07 -2.38 -0.02 2.14 16 45 H 0.10 2.49 7.70 -2.39 -0.02 2.47 16 46 H 0.09 1.85 8.10 -2.38 -0.02 1.83 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.09 2.20 6.66 -2.39 -0.02 2.18 16 50 H 0.10 2.34 8.09 -2.38 -0.02 2.32 16 Total: -1.00 -62.55 391.50 2.97 -59.58 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: 0.39 Total: 42.95 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.28 Total: 11.31 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.47 Total: -73.22 kcal Atomic # 8 Polarization: -81.43 SS G_CDS: -2.26 Total: -83.68 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -62.55 2.97 -59.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597802115.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.542 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds