Wall clock time and date at job start Tue Mar 31 2020 23:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 C 1.52995 * 109.47249 * 120.00315 * 2 1 3 5 5 N 1.46893 * 109.47264 * 64.95560 * 4 2 1 6 6 C 1.46903 * 111.00095 * 74.28921 * 5 4 2 7 7 C 1.50700 * 109.46933 * 199.87554 * 6 5 4 8 8 H 1.07996 * 120.00537 * 3.77374 * 7 6 5 9 9 C 1.37882 * 119.99583 * 183.77336 * 7 6 5 10 10 N 1.31512 * 120.00037 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99762 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47022 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46832 * 120.00133 * 11 9 7 14 14 H 1.48493 * 109.47348 * 240.00110 * 11 9 7 15 15 C 1.46898 * 111.00084 * 198.24422 * 5 4 2 16 16 C 1.50704 * 109.47380 * 66.04345 * 15 5 4 17 17 C 1.33326 * 125.94883 * 89.68594 * 16 15 5 18 18 N 1.32123 * 114.57689 * 179.83286 * 17 16 15 19 19 C 1.29677 * 116.86710 * 0.47624 * 18 17 16 20 20 N 1.38615 * 124.95053 * 179.73768 * 19 18 17 21 21 C 1.47010 * 110.99657 * 123.63935 * 20 19 18 22 22 C 1.53102 * 109.25573 * 177.61101 * 21 20 19 23 23 O 1.43009 * 109.26304 * 56.84431 * 22 21 20 24 24 C 1.43018 * 113.74099 * 301.33598 * 23 22 21 25 25 C 1.47012 * 110.99782 * 0.02562 * 20 19 18 26 26 S 1.70969 * 110.10295 * 359.74319 * 19 18 17 27 27 H 1.08999 * 109.46928 * 59.99662 * 1 2 3 28 28 H 1.08993 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46863 * 299.99345 * 1 2 3 30 30 H 1.08996 * 109.46863 * 240.00655 * 2 1 3 31 31 H 1.09001 * 109.47263 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47912 * 300.00376 * 3 2 1 33 33 H 1.09006 * 109.46934 * 60.00546 * 3 2 1 34 34 H 1.09005 * 109.47198 * 304.94979 * 4 2 1 35 35 H 1.09007 * 109.47106 * 184.95724 * 4 2 1 36 36 H 1.08995 * 109.47045 * 319.87477 * 6 5 4 37 37 H 1.08998 * 109.46779 * 79.87643 * 6 5 4 38 38 H 0.97003 * 119.99738 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47598 * 186.04428 * 15 5 4 40 40 H 1.09005 * 109.47127 * 306.04376 * 15 5 4 41 41 H 1.08006 * 122.71092 * 0.02810 * 17 16 15 42 42 H 1.09000 * 109.50981 * 297.53860 * 21 20 19 43 43 H 1.08995 * 109.51267 * 57.67751 * 21 20 19 44 44 H 1.09005 * 109.50294 * 296.91292 * 22 21 20 45 45 H 1.09002 * 109.54377 * 176.80775 * 22 21 20 46 46 H 1.08998 * 109.50356 * 298.73487 * 24 23 22 47 47 H 1.08999 * 109.54469 * 178.62006 * 24 23 22 48 48 H 1.08992 * 109.50763 * 302.32416 * 25 20 19 49 49 H 1.08995 * 109.50587 * 62.45794 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6506 -2.1364 1.1908 6 6 2.4725 -2.8690 0.2183 7 6 1.7673 -4.1403 -0.1788 8 1 0.7785 -4.3507 0.2011 9 6 2.3846 -5.0348 -1.0273 10 7 3.5889 -4.7788 -1.4896 11 14 1.5108 -6.6109 -1.5191 12 1 0.1772 -6.6614 -0.8678 13 1 1.3424 -6.6439 -2.9941 14 1 2.3179 -7.7799 -1.0867 15 6 1.7269 -2.7587 2.5193 16 6 0.6932 -2.1393 3.4243 17 6 -0.5621 -2.5600 3.5817 18 7 -1.2761 -1.8506 4.4377 19 6 -0.6839 -0.8448 5.0027 20 7 -1.2740 0.0116 5.9191 21 6 -0.5088 0.0488 7.1738 22 6 -1.1600 1.0489 8.1329 23 8 -2.5259 0.6808 8.3424 24 6 -3.3007 0.6352 7.1411 25 6 -2.6711 -0.3694 6.1724 26 16 0.9307 -0.7288 4.4525 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6061 -0.2612 2.1370 35 1 3.1265 -0.6450 1.2946 36 1 2.6294 -2.2495 -0.6646 37 1 3.4355 -3.1127 0.6670 38 1 4.0233 -5.4084 -2.0862 39 1 1.5381 -3.8286 2.4309 40 1 2.7201 -2.5985 2.9390 41 1 -0.9621 -3.4137 3.0547 42 1 -0.5061 -0.9421 7.6280 43 1 0.5157 0.3576 6.9665 44 1 -1.1146 2.0490 7.7018 45 1 -0.6300 1.0387 9.0854 46 1 -3.3175 1.6233 6.6812 47 1 -4.3191 0.3255 7.3756 48 1 -3.2252 -0.3659 5.2339 49 1 -2.7026 -1.3668 6.6107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:51 Heat of formation + Delta-G solvation = 8.603732 kcal Electronic energy + Delta-G solvation = -27903.491554 eV Core-core repulsion = 24185.540820 eV Total energy + Delta-G solvation = -3717.950734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49110 -39.07035 -37.56689 -35.92147 -34.16884 -32.58455 -31.66403 -30.41381 -28.19943 -27.20486 -26.66114 -25.57057 -24.56720 -24.12567 -23.07718 -21.33259 -20.95727 -19.61663 -18.94313 -18.12391 -16.76557 -16.47528 -16.40613 -15.60811 -15.45480 -15.24286 -15.09810 -14.92907 -14.60630 -14.41006 -14.09091 -13.76507 -13.69930 -13.22331 -12.81343 -12.69045 -12.54150 -12.10086 -11.96729 -11.87577 -11.78888 -11.67635 -11.46333 -11.24572 -11.09741 -10.84893 -10.80439 -10.62832 -10.46260 -10.38283 -10.22478 -10.10678 -9.81833 -9.73376 -9.53106 -9.26782 -8.93122 -8.45355 -8.04947 -7.30823 -6.05069 -4.06505 0.90301 1.25034 1.89926 2.94328 3.29239 3.34118 3.37426 3.41904 3.49087 4.32753 4.40492 4.52999 4.66248 4.73912 4.85799 4.89974 4.94250 5.11235 5.25589 5.29578 5.29751 5.37334 5.37988 5.44278 5.53798 5.59784 5.64387 5.75742 5.90950 6.04393 6.08711 6.12155 6.18548 6.22584 6.26091 6.31618 6.36820 6.48213 6.55853 6.69694 6.72000 6.86830 6.96048 7.17228 7.29138 7.79814 7.88435 8.05937 8.11997 8.48812 9.02266 9.58280 11.05209 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002952 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.370565 B = 9481.705115 C =10431.222300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.055 3.945 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.138 3.862 16 C -0.195 4.195 17 C 0.061 3.939 18 N -0.507 5.507 19 C 0.198 3.802 20 N -0.447 5.447 21 C 0.016 3.984 22 C 0.066 3.934 23 O -0.384 6.384 24 C 0.062 3.938 25 C 0.032 3.968 26 S 0.123 5.877 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.033 0.967 37 H -0.005 1.005 38 H 0.260 0.740 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.178 0.822 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 12.812 16.519 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.251 5.251 6 C 0.068 3.932 7 C -0.543 4.543 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.007 3.993 16 C -0.317 4.317 17 C -0.089 4.089 18 N -0.227 5.227 19 C -0.171 4.171 20 N -0.169 5.169 21 C -0.112 4.112 22 C -0.011 4.011 23 O -0.302 6.302 24 C -0.016 4.016 25 C -0.097 4.097 26 S 0.375 5.625 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.013 0.987 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.050 0.950 41 H 0.195 0.805 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.648 13.733 16.610 22.869 hybrid contribution 0.245 -2.175 -0.727 2.306 sum -7.403 11.558 15.884 20.992 Atomic orbital electron populations 1.21630 0.95050 1.02687 0.99374 1.21059 0.96414 0.94462 0.98940 1.21822 1.00563 0.96773 1.01050 1.22227 0.96890 0.90585 0.97714 1.62135 1.56937 1.00654 1.05348 1.19801 0.90541 0.93148 0.89712 1.21197 1.02482 1.02992 1.27619 0.91731 1.24986 0.94902 0.98428 0.96265 1.69964 1.13676 1.36671 1.33525 0.86484 0.79766 0.83132 0.78307 1.19612 1.21095 1.21183 1.20407 0.92093 0.99500 0.87262 1.25954 1.01031 0.99464 1.05247 1.21423 0.89621 1.00884 0.96995 1.66770 1.37511 1.05268 1.13125 1.24833 0.96246 0.94172 1.01806 1.59378 1.03812 1.44210 1.09497 1.23102 0.98337 1.01065 0.88653 1.22678 0.82463 0.96856 0.99108 1.88005 1.21139 1.90133 1.30936 1.22796 0.95146 0.98784 0.84843 1.22749 0.86926 0.98654 1.01387 1.83754 1.10504 1.29607 1.38628 0.94216 0.91000 0.94295 0.90483 0.93160 0.92999 0.93284 0.92193 0.95926 0.94870 0.98674 0.93002 0.87618 0.94972 0.80493 0.92238 0.88807 0.91761 0.87638 0.91988 0.87731 0.88325 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.08 37.16 0.34 -1.81 16 2 C -0.09 -1.52 2.95 -90.62 -0.27 -1.79 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C 0.05 0.98 4.22 -3.83 -0.02 0.96 16 5 N -0.53 -10.65 3.81 -237.52 -0.90 -11.55 16 6 C 0.19 4.74 4.58 -4.97 -0.02 4.72 16 7 C -0.50 -13.50 8.57 -34.44 -0.30 -13.80 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 11 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.14 2.52 5.32 -4.98 -0.03 2.49 16 16 C -0.20 -3.13 5.36 -36.02 -0.19 -3.33 16 17 C 0.06 0.98 11.24 -19.14 -0.22 0.76 16 18 N -0.51 -7.90 9.52 -15.21 -0.14 -8.04 16 19 C 0.20 2.76 6.73 -87.68 -0.59 2.17 16 20 N -0.45 -5.20 4.80 -175.08 -0.84 -6.04 16 21 C 0.02 0.15 5.48 -3.71 -0.02 0.13 16 22 C 0.07 0.51 7.01 37.21 0.26 0.77 16 23 O -0.38 -3.68 10.83 -35.23 -0.38 -4.06 16 24 C 0.06 0.51 7.01 37.21 0.26 0.78 16 25 C 0.03 0.34 4.96 -3.71 -0.02 0.32 16 26 S 0.12 1.68 20.54 -107.50 -2.21 -0.53 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.36 7.75 -51.93 -0.40 0.95 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.49 6.56 -51.93 -0.34 1.15 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.99 5.23 -51.93 -0.27 0.72 16 35 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 36 H 0.03 0.88 6.34 -51.93 -0.33 0.55 16 37 H 0.00 -0.12 8.00 -51.93 -0.42 -0.54 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.11 2.05 7.45 -51.93 -0.39 1.67 16 40 H 0.03 0.58 8.12 -51.93 -0.42 0.15 16 41 H 0.18 2.76 8.06 -52.48 -0.42 2.34 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.78 7.48 -51.93 -0.39 0.39 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 1.11 8.01 -51.93 -0.42 0.69 16 49 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -29.83 397.47 -11.74 -41.57 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.41 Total: -0.37 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.56 Total: -7.86 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -1.15 Total: -50.92 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.38 Total: -4.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.21 Total: -0.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.83 -11.74 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.175 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds