Wall clock time and date at job start Tue Mar 31 2020 23:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 C 1.52995 * 109.47249 * 120.00315 * 2 1 3 5 5 N 1.46893 * 109.47264 * 64.95560 * 4 2 1 6 6 C 1.46903 * 111.00095 * 74.28921 * 5 4 2 7 7 C 1.50700 * 109.46933 * 199.87554 * 6 5 4 8 8 H 1.07996 * 120.00537 * 3.77374 * 7 6 5 9 9 C 1.37882 * 119.99583 * 183.77336 * 7 6 5 10 10 N 1.31512 * 120.00037 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99762 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47022 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46832 * 120.00133 * 11 9 7 14 14 H 1.48493 * 109.47348 * 240.00110 * 11 9 7 15 15 C 1.46898 * 111.00084 * 198.24422 * 5 4 2 16 16 C 1.50704 * 109.47380 * 66.04345 * 15 5 4 17 17 C 1.33326 * 125.94883 * 89.68594 * 16 15 5 18 18 N 1.32123 * 114.57689 * 179.83286 * 17 16 15 19 19 C 1.29677 * 116.86710 * 0.47624 * 18 17 16 20 20 N 1.38615 * 124.95053 * 179.73768 * 19 18 17 21 21 C 1.47010 * 110.99657 * 123.63935 * 20 19 18 22 22 C 1.53102 * 109.25573 * 177.61101 * 21 20 19 23 23 O 1.43009 * 109.26304 * 56.84431 * 22 21 20 24 24 C 1.43018 * 113.74099 * 301.33598 * 23 22 21 25 25 C 1.47012 * 110.99782 * 0.02562 * 20 19 18 26 26 S 1.70969 * 110.10295 * 359.74319 * 19 18 17 27 27 H 1.08999 * 109.46928 * 59.99662 * 1 2 3 28 28 H 1.08993 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46863 * 299.99345 * 1 2 3 30 30 H 1.08996 * 109.46863 * 240.00655 * 2 1 3 31 31 H 1.09001 * 109.47263 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47912 * 300.00376 * 3 2 1 33 33 H 1.09006 * 109.46934 * 60.00546 * 3 2 1 34 34 H 1.09005 * 109.47198 * 304.94979 * 4 2 1 35 35 H 1.09007 * 109.47106 * 184.95724 * 4 2 1 36 36 H 1.08995 * 109.47045 * 319.87477 * 6 5 4 37 37 H 1.08998 * 109.46779 * 79.87643 * 6 5 4 38 38 H 0.97003 * 119.99738 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47598 * 186.04428 * 15 5 4 40 40 H 1.09005 * 109.47127 * 306.04376 * 15 5 4 41 41 H 1.08006 * 122.71092 * 0.02810 * 17 16 15 42 42 H 1.09000 * 109.50981 * 297.53860 * 21 20 19 43 43 H 1.08995 * 109.51267 * 57.67751 * 21 20 19 44 44 H 1.09005 * 109.50294 * 296.91292 * 22 21 20 45 45 H 1.09002 * 109.54377 * 176.80775 * 22 21 20 46 46 H 1.08998 * 109.50356 * 298.73487 * 24 23 22 47 47 H 1.08999 * 109.54469 * 178.62006 * 24 23 22 48 48 H 1.08992 * 109.50763 * 302.32416 * 25 20 19 49 49 H 1.08995 * 109.50587 * 62.45794 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6506 -2.1364 1.1908 6 6 2.4725 -2.8690 0.2183 7 6 1.7673 -4.1403 -0.1788 8 1 0.7785 -4.3507 0.2011 9 6 2.3846 -5.0348 -1.0273 10 7 3.5889 -4.7788 -1.4896 11 14 1.5108 -6.6109 -1.5191 12 1 0.1772 -6.6614 -0.8678 13 1 1.3424 -6.6439 -2.9941 14 1 2.3179 -7.7799 -1.0867 15 6 1.7269 -2.7587 2.5193 16 6 0.6932 -2.1393 3.4243 17 6 -0.5621 -2.5600 3.5817 18 7 -1.2761 -1.8506 4.4377 19 6 -0.6839 -0.8448 5.0027 20 7 -1.2740 0.0116 5.9191 21 6 -0.5088 0.0488 7.1738 22 6 -1.1600 1.0489 8.1329 23 8 -2.5259 0.6808 8.3424 24 6 -3.3007 0.6352 7.1411 25 6 -2.6711 -0.3694 6.1724 26 16 0.9307 -0.7288 4.4525 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6061 -0.2612 2.1370 35 1 3.1265 -0.6450 1.2946 36 1 2.6294 -2.2495 -0.6646 37 1 3.4355 -3.1127 0.6670 38 1 4.0233 -5.4084 -2.0862 39 1 1.5381 -3.8286 2.4309 40 1 2.7201 -2.5985 2.9390 41 1 -0.9621 -3.4137 3.0547 42 1 -0.5061 -0.9421 7.6280 43 1 0.5157 0.3576 6.9665 44 1 -1.1146 2.0490 7.7018 45 1 -0.6300 1.0387 9.0854 46 1 -3.3175 1.6233 6.6812 47 1 -4.3191 0.3255 7.3756 48 1 -3.2252 -0.3659 5.2339 49 1 -2.7026 -1.3668 6.6107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:51 Heat of formation + Delta-G solvation = -9.724983 kcal Electronic energy + Delta-G solvation = -27904.286347 eV Core-core repulsion = 24185.540820 eV Total energy + Delta-G solvation = -3718.745527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44982 -40.10658 -39.04496 -36.83278 -35.67618 -34.54663 -32.37995 -31.77923 -29.41621 -28.83395 -27.91577 -26.84672 -25.62965 -25.34242 -24.52329 -22.73441 -22.00559 -20.85348 -20.22737 -19.24960 -18.58152 -17.70815 -17.13679 -16.84250 -16.62676 -16.32533 -16.19528 -16.08645 -15.94593 -15.76850 -15.32095 -15.15377 -14.94842 -14.51169 -14.19180 -14.09906 -13.81894 -13.43582 -13.36968 -13.11509 -13.06598 -12.77867 -12.65981 -12.56607 -12.45734 -12.43549 -12.19179 -12.02082 -11.77980 -11.76580 -11.67831 -11.37144 -11.29479 -11.17411 -10.71609 -10.60544 -10.56713 -10.12367 -9.19136 -8.99313 -8.17485 -6.26423 -0.27578 0.10554 0.69465 1.40551 1.42343 1.54858 1.76069 2.38044 2.41548 2.85978 3.15165 3.32722 3.44426 3.76133 3.87040 3.89297 3.96941 4.03548 4.10210 4.14387 4.21784 4.24597 4.38561 4.41063 4.60855 4.65973 4.67231 4.73448 4.76979 4.79475 4.82859 4.86830 4.90395 4.92437 5.03619 5.05468 5.10149 5.19706 5.23468 5.32865 5.37429 5.50591 5.57869 5.63066 5.70829 6.08176 6.10661 6.32806 6.60742 6.71424 6.89826 7.43087 8.92796 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002952 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.370565 B = 9481.705115 C =10431.222300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.137 4.137 4 C 0.057 3.943 5 N -0.529 5.529 6 C 0.211 3.789 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.280 1.280 15 C 0.145 3.855 16 C -0.221 4.221 17 C 0.062 3.938 18 N -0.528 5.528 19 C 0.204 3.796 20 N -0.449 5.449 21 C 0.014 3.986 22 C 0.067 3.933 23 O -0.398 6.398 24 C 0.067 3.933 25 C 0.034 3.966 26 S 0.168 5.832 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.016 0.984 36 H 0.010 0.990 37 H -0.033 1.033 38 H 0.263 0.737 39 H 0.086 0.914 40 H 0.034 0.966 41 H 0.174 0.826 42 H 0.053 0.947 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.130 0.870 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 14.488 18.175 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.110 4.110 3 C -0.195 4.195 4 C -0.072 4.072 5 N -0.254 5.254 6 C 0.085 3.915 7 C -0.552 4.552 8 H 0.080 0.920 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.206 1.206 15 C 0.014 3.986 16 C -0.343 4.343 17 C -0.088 4.088 18 N -0.249 5.249 19 C -0.164 4.164 20 N -0.171 5.171 21 C -0.113 4.113 22 C -0.010 4.010 23 O -0.317 6.317 24 C -0.010 4.010 25 C -0.095 4.095 26 S 0.421 5.579 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.028 0.972 37 H -0.016 1.016 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.191 0.809 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.148 0.852 46 H 0.089 0.911 47 H 0.141 0.859 48 H 0.108 0.892 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.829 15.431 18.296 25.511 hybrid contribution 0.582 -2.597 -1.138 2.895 sum -8.247 12.834 17.158 22.959 Atomic orbital electron populations 1.21524 0.94542 1.01119 1.00641 1.21065 0.96805 0.96215 0.96964 1.21755 1.00723 0.94418 1.02554 1.22296 0.96641 0.89172 0.99051 1.62054 1.55747 1.01703 1.05861 1.19399 0.89649 0.92633 0.89798 1.21467 1.02399 1.03860 1.27432 0.91986 1.25817 0.95556 1.01750 0.96255 1.70083 1.15153 1.37978 1.34301 0.85436 0.78865 0.79067 0.77871 1.18815 1.20769 1.20589 1.20200 0.93014 0.98661 0.86698 1.25617 1.00545 1.01606 1.06527 1.21447 0.89720 1.00844 0.96822 1.66818 1.37891 1.06233 1.13919 1.25229 0.96376 0.93458 1.01386 1.59482 1.04563 1.42786 1.10227 1.23266 0.98893 1.01473 0.87710 1.22857 0.81694 0.96538 0.99904 1.87997 1.22040 1.90210 1.31423 1.22856 0.95647 0.98471 0.84051 1.22774 0.86390 0.98846 1.01529 1.83483 1.09674 1.27506 1.37284 0.92652 0.93948 0.93218 0.93649 0.92931 0.91624 0.91617 0.90435 0.96579 0.97198 1.01556 0.92846 0.89560 0.94837 0.80927 0.92899 0.87640 0.90745 0.85218 0.91070 0.85929 0.89193 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 9.08 71.98 0.65 -3.27 16 2 C -0.09 -3.09 2.95 -10.79 -0.03 -3.13 16 3 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 4 C 0.06 2.04 4.22 86.30 0.36 2.40 16 5 N -0.53 -22.20 3.81 -905.37 -3.45 -25.64 16 6 C 0.21 10.93 4.58 85.56 0.39 11.32 16 7 C -0.51 -28.42 8.57 25.60 0.22 -28.20 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.00 0.23 5.46 84.66 0.46 0.69 16 10 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 11 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.14 5.45 5.32 85.56 0.45 5.90 16 16 C -0.22 -7.10 5.36 24.58 0.13 -6.97 16 17 C 0.06 2.02 11.24 83.54 0.94 2.96 16 18 N -0.53 -16.17 9.52 -202.02 -1.92 -18.09 16 19 C 0.20 5.40 6.73 179.32 1.21 6.61 16 20 N -0.45 -9.54 4.80 -707.82 -3.39 -12.93 16 21 C 0.01 0.22 5.48 86.32 0.47 0.69 16 22 C 0.07 0.81 7.01 72.02 0.50 1.32 16 23 O -0.40 -6.56 10.83 -148.98 -1.61 -8.17 16 24 C 0.07 0.96 7.01 72.02 0.50 1.46 16 25 C 0.03 0.67 4.96 86.32 0.43 1.09 16 26 S 0.17 4.31 20.54 -56.49 -1.16 3.15 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.61 7.75 -2.39 -0.02 1.59 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.82 6.56 -2.39 -0.02 1.80 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 2.49 5.23 -2.38 -0.01 2.48 16 35 H 0.02 0.60 8.02 -2.38 -0.02 0.58 16 36 H 0.01 0.56 6.34 -2.39 -0.02 0.54 16 37 H -0.03 -1.88 8.00 -2.39 -0.02 -1.90 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.09 3.53 7.45 -2.39 -0.02 3.51 16 40 H 0.03 1.23 8.12 -2.38 -0.02 1.22 16 41 H 0.17 5.57 8.06 -2.91 -0.02 5.54 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.11 1.44 7.48 -2.39 -0.02 1.42 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.09 1.92 8.01 -2.39 -0.02 1.90 16 49 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -65.49 397.47 -0.94 -66.44 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.92 Total: 14.38 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 7.36 Total: -10.00 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -8.48 Total: -111.98 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.61 Total: -8.17 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.16 Total: 3.15 kcal Total: -65.49 -0.94 -66.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.712 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds