Wall clock time and date at job start Tue Mar 31 2020 23:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.47033 * 2 1 4 4 C 1.53000 * 109.47345 * 240.00035 * 2 1 3 5 5 O 1.45203 * 109.47124 * 119.99916 * 2 1 3 6 6 C 1.34630 * 116.99952 * 60.00144 * 5 2 1 7 7 O 1.21508 * 120.00061 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99579 * 180.02562 * 6 5 2 9 9 C 1.48141 * 127.84231 * 359.97438 * 8 6 5 10 10 C 1.54387 * 104.62167 * 219.58762 * 9 8 6 11 11 H 1.09002 * 117.61390 * 115.21385 * 10 9 8 12 12 C 1.52996 * 118.12446 * 272.81518 * 10 9 8 13 13 H 1.09006 * 117.44403 * 343.88327 * 12 10 9 14 14 C 1.50701 * 117.44203 * 199.19347 * 12 10 9 15 15 O 1.20826 * 120.00161 * 359.97438 * 14 12 10 16 16 O 1.34231 * 120.00213 * 179.97438 * 14 12 10 17 17 C 1.45192 * 117.00394 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47583 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47582 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47449 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99848 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00374 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99706 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47448 * 59.99434 * 24 22 20 26 26 H 1.48504 * 109.47108 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46734 * 299.99387 * 24 22 20 28 28 C 1.53138 * 60.65947 * 91.57587 * 12 10 9 29 29 H 1.08996 * 120.42148 * 111.48705 * 28 12 10 30 30 C 1.48151 * 127.83369 * 180.02562 * 8 6 5 31 31 H 1.08996 * 109.47178 * 300.00307 * 1 2 3 32 32 H 1.08997 * 109.47062 * 60.00219 * 1 2 3 33 33 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47190 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46538 * 299.99799 * 3 2 1 36 36 H 1.09002 * 109.46774 * 60.00132 * 3 2 1 37 37 H 1.09001 * 109.46953 * 299.99978 * 4 2 1 38 38 H 1.08997 * 109.47248 * 59.99859 * 4 2 1 39 39 H 1.08997 * 109.47059 * 179.97438 * 4 2 1 40 40 H 1.09001 * 110.41010 * 338.37809 * 9 8 6 41 41 H 1.09004 * 110.40547 * 100.80247 * 9 8 6 42 42 H 1.09003 * 109.47525 * 300.00250 * 17 16 14 43 43 H 1.09008 * 109.46964 * 60.00024 * 17 16 14 44 44 H 1.09003 * 109.47001 * 300.00701 * 18 17 16 45 45 H 1.08998 * 109.46905 * 60.00036 * 18 17 16 46 46 H 1.09005 * 109.46469 * 299.99974 * 19 18 17 47 47 H 1.08998 * 109.46795 * 59.99767 * 19 18 17 48 48 H 0.97007 * 120.00224 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.40666 * 259.19717 * 30 8 6 50 50 H 1.09002 * 110.40751 * 21.51159 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5096 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 2.9185 -2.1879 3.5318 10 6 3.8547 -3.3753 3.8434 11 1 4.9216 -3.2370 3.6680 12 6 3.3667 -4.4393 4.8285 13 1 2.5170 -4.1852 5.4623 14 6 4.4060 -5.3275 5.4626 15 8 5.5734 -5.1842 5.1859 16 8 4.0349 -6.2780 6.3348 17 6 5.0892 -7.0967 6.9059 18 6 4.4783 -8.1157 7.8698 19 6 5.5894 -8.9780 8.4721 20 6 4.9876 -9.9821 9.4211 21 1 3.9193 -10.0028 9.5792 22 6 5.8006 -10.8735 10.0883 23 7 7.1014 -10.8479 9.8961 24 14 5.0545 -12.1186 11.2640 25 1 4.1003 -12.9856 10.5270 26 1 6.1331 -12.9547 11.8496 27 1 4.3369 -11.4049 12.3508 28 6 3.1006 -4.6241 3.3318 29 1 3.6050 -5.4137 2.7749 30 6 1.7766 -4.0777 2.7570 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6768 -0.2075 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 3.4978 -1.3181 3.2221 41 1 2.3066 -1.9480 4.4014 42 1 5.6150 -7.6208 6.1077 43 1 5.7905 -6.4608 7.4464 44 1 3.9528 -7.5912 8.6679 45 1 3.7768 -8.7515 7.3297 46 1 6.1151 -9.5025 7.6741 47 1 6.2906 -8.3418 9.0123 48 1 7.6734 -11.4754 10.3653 49 1 0.9860 -4.1336 3.5054 50 1 1.4926 -4.6330 1.8630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796078789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:04 Heat of formation + Delta-G solvation = -140.791657 kcal Electronic energy + Delta-G solvation = -28693.777275 eV Core-core repulsion = 24494.302649 eV Total energy + Delta-G solvation = -4199.474627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43966 -40.67503 -39.46513 -37.23831 -36.46567 -34.71565 -34.02515 -33.72308 -31.72588 -29.13324 -27.94279 -27.82747 -27.79279 -26.80204 -24.28806 -22.88785 -22.03772 -20.76349 -20.54754 -20.20213 -19.80747 -18.38194 -17.78436 -17.00008 -16.90067 -16.65124 -16.30089 -16.09923 -15.46237 -15.14794 -14.58684 -14.53411 -14.47393 -14.04827 -14.00032 -13.82630 -13.23708 -12.95191 -12.86089 -12.79060 -12.59557 -12.33471 -12.32754 -12.20164 -12.19072 -12.01884 -11.88458 -11.87111 -11.73019 -10.97353 -10.82986 -10.79023 -10.72145 -10.69613 -10.65777 -10.48808 -10.43580 -10.30757 -9.75680 -9.53096 -9.33394 -9.19768 -8.40090 -6.04988 -4.08301 1.56973 1.97721 2.38525 2.63245 3.09539 3.31562 3.36015 3.38452 3.43839 4.04673 4.11391 4.19197 4.27755 4.32745 4.42447 4.46087 4.47627 4.68046 4.83480 4.88551 5.03807 5.05949 5.11124 5.17777 5.25922 5.28223 5.28785 5.30966 5.35056 5.42811 5.52015 5.52866 5.56844 5.57373 5.60316 5.67938 5.86544 5.90244 5.96504 6.05581 6.42939 6.50371 6.78334 6.94951 7.04156 7.57651 7.68549 7.82615 7.91465 7.92898 8.33843 8.97635 9.56134 11.06343 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.001452 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.866184 B =19272.622911 C =19560.833920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.677 3.323 7 O -0.565 6.565 8 N -0.611 5.611 9 C 0.132 3.868 10 C -0.143 4.143 11 H 0.140 0.860 12 C -0.116 4.116 13 H 0.139 0.861 14 C 0.489 3.511 15 O -0.507 6.507 16 O -0.351 6.351 17 C 0.068 3.932 18 C -0.109 4.109 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.148 4.148 29 H 0.135 0.865 30 C 0.152 3.848 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.019 0.981 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.087 0.913 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 25.267 -20.430 34.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.433 3.567 7 O -0.454 6.454 8 N -0.352 5.352 9 C 0.009 3.991 10 C -0.162 4.162 11 H 0.157 0.843 12 C -0.136 4.136 13 H 0.157 0.843 14 C 0.331 3.669 15 O -0.395 6.395 16 O -0.267 6.267 17 C -0.004 4.004 18 C -0.147 4.147 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.168 4.168 29 H 0.153 0.847 30 C 0.031 3.969 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.954 25.175 -20.870 34.817 hybrid contribution -0.034 -0.805 0.725 1.084 sum -11.989 24.370 -20.146 33.815 Atomic orbital electron populations 1.22521 0.93902 1.05086 1.02584 1.22117 0.94428 0.91540 0.81987 1.21868 1.02354 0.92372 1.03205 1.22524 1.01670 1.03484 0.96455 1.86307 1.71445 1.23254 1.46535 1.17318 0.78482 0.80471 0.80441 1.90920 1.41430 1.70538 1.42510 1.47895 1.53307 1.12774 1.21223 1.21900 0.91920 0.95944 0.89313 1.23791 1.01017 0.89929 1.01447 0.84262 1.21791 1.00138 0.99065 0.92570 0.84282 1.22186 0.88073 0.79345 0.77254 1.90676 1.19911 1.68791 1.60169 1.86478 1.42472 1.43624 1.54096 1.23564 0.88221 0.91838 0.96812 1.21776 1.00993 0.95494 0.96418 1.19051 0.92687 0.93842 0.95727 1.21133 0.93630 1.16430 1.24961 0.92454 1.25021 0.94828 0.97576 0.96968 1.69955 1.03264 1.37344 1.42761 0.86602 0.78714 0.81206 0.81151 1.20170 1.21252 1.20178 1.23767 0.98402 1.01277 0.93309 0.84748 1.21755 0.94751 0.79136 1.01269 0.92113 0.91039 0.89397 0.91384 0.90036 0.91406 0.89395 0.91041 0.92084 0.88516 0.89803 0.91410 0.91367 0.92073 0.92064 0.96226 0.96213 0.92827 0.89515 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.37 37.16 0.31 -1.01 16 2 C 0.14 1.01 1.13 -90.61 -0.10 0.91 16 3 C -0.14 -0.70 8.85 37.16 0.33 -0.37 16 4 C -0.18 -1.37 8.37 37.16 0.31 -1.06 16 5 O -0.36 -3.36 9.41 -40.30 -0.38 -3.73 16 6 C 0.68 7.07 8.01 54.06 0.43 7.50 16 7 O -0.56 -7.00 12.15 -19.28 -0.23 -7.23 16 8 N -0.61 -5.30 3.32 -175.11 -0.58 -5.88 16 9 C 0.13 0.90 6.87 -2.41 -0.02 0.88 16 10 C -0.14 -1.16 6.56 -89.06 -0.58 -1.75 16 11 H 0.14 1.26 7.84 -51.93 -0.41 0.85 16 12 C -0.12 -1.08 5.84 -91.70 -0.54 -1.61 16 13 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 14 C 0.49 6.82 7.74 36.01 0.28 7.10 16 15 O -0.51 -8.45 16.11 -18.75 -0.30 -8.75 16 16 O -0.35 -5.54 10.22 -39.26 -0.40 -5.94 16 17 C 0.07 1.22 5.47 37.16 0.20 1.42 16 18 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 21 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 24 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C -0.15 -1.22 6.86 -89.01 -0.61 -1.83 16 29 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 30 C 0.15 1.15 6.84 -2.43 -0.02 1.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.83 5.88 -51.93 -0.31 0.53 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.86 5.88 -51.93 -0.31 0.55 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.61 7.87 -51.93 -0.41 0.20 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 43 H 0.07 1.22 8.13 -51.92 -0.42 0.80 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.79 7.88 -51.93 -0.41 0.38 16 LS Contribution 411.14 15.07 6.20 6.20 Total: -1.00 -32.99 411.14 -9.25 -42.24 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.56 Total: -3.44 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.70 Total: -3.95 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.16 Total: -31.75 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.32 Total: -25.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.99 -9.25 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796078789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.553 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds