Wall clock time and date at job start Tue Mar 31 2020 23:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.47033 * 2 1 4 4 C 1.53000 * 109.47345 * 240.00035 * 2 1 3 5 5 O 1.45203 * 109.47124 * 119.99916 * 2 1 3 6 6 C 1.34630 * 116.99952 * 60.00144 * 5 2 1 7 7 O 1.21508 * 120.00061 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99579 * 180.02562 * 6 5 2 9 9 C 1.48141 * 127.84231 * 359.97438 * 8 6 5 10 10 C 1.54387 * 104.62167 * 219.58762 * 9 8 6 11 11 H 1.09002 * 117.61390 * 115.21385 * 10 9 8 12 12 C 1.52996 * 118.12446 * 272.81518 * 10 9 8 13 13 H 1.09006 * 117.44403 * 343.88327 * 12 10 9 14 14 C 1.50701 * 117.44203 * 199.19347 * 12 10 9 15 15 O 1.20826 * 120.00161 * 359.97438 * 14 12 10 16 16 O 1.34231 * 120.00213 * 179.97438 * 14 12 10 17 17 C 1.45192 * 117.00394 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47583 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47582 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47449 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99848 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00374 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99706 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47448 * 59.99434 * 24 22 20 26 26 H 1.48504 * 109.47108 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46734 * 299.99387 * 24 22 20 28 28 C 1.53138 * 60.65947 * 91.57587 * 12 10 9 29 29 H 1.08996 * 120.42148 * 111.48705 * 28 12 10 30 30 C 1.48151 * 127.83369 * 180.02562 * 8 6 5 31 31 H 1.08996 * 109.47178 * 300.00307 * 1 2 3 32 32 H 1.08997 * 109.47062 * 60.00219 * 1 2 3 33 33 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47190 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46538 * 299.99799 * 3 2 1 36 36 H 1.09002 * 109.46774 * 60.00132 * 3 2 1 37 37 H 1.09001 * 109.46953 * 299.99978 * 4 2 1 38 38 H 1.08997 * 109.47248 * 59.99859 * 4 2 1 39 39 H 1.08997 * 109.47059 * 179.97438 * 4 2 1 40 40 H 1.09001 * 110.41010 * 338.37809 * 9 8 6 41 41 H 1.09004 * 110.40547 * 100.80247 * 9 8 6 42 42 H 1.09003 * 109.47525 * 300.00250 * 17 16 14 43 43 H 1.09008 * 109.46964 * 60.00024 * 17 16 14 44 44 H 1.09003 * 109.47001 * 300.00701 * 18 17 16 45 45 H 1.08998 * 109.46905 * 60.00036 * 18 17 16 46 46 H 1.09005 * 109.46469 * 299.99974 * 19 18 17 47 47 H 1.08998 * 109.46795 * 59.99767 * 19 18 17 48 48 H 0.97007 * 120.00224 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.40666 * 259.19717 * 30 8 6 50 50 H 1.09002 * 110.40751 * 21.51159 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5096 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 2.9185 -2.1879 3.5318 10 6 3.8547 -3.3753 3.8434 11 1 4.9216 -3.2370 3.6680 12 6 3.3667 -4.4393 4.8285 13 1 2.5170 -4.1852 5.4623 14 6 4.4060 -5.3275 5.4626 15 8 5.5734 -5.1842 5.1859 16 8 4.0349 -6.2780 6.3348 17 6 5.0892 -7.0967 6.9059 18 6 4.4783 -8.1157 7.8698 19 6 5.5894 -8.9780 8.4721 20 6 4.9876 -9.9821 9.4211 21 1 3.9193 -10.0028 9.5792 22 6 5.8006 -10.8735 10.0883 23 7 7.1014 -10.8479 9.8961 24 14 5.0545 -12.1186 11.2640 25 1 4.1003 -12.9856 10.5270 26 1 6.1331 -12.9547 11.8496 27 1 4.3369 -11.4049 12.3508 28 6 3.1006 -4.6241 3.3318 29 1 3.6050 -5.4137 2.7749 30 6 1.7766 -4.0777 2.7570 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6768 -0.2075 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 3.4978 -1.3181 3.2221 41 1 2.3066 -1.9480 4.4014 42 1 5.6150 -7.6208 6.1077 43 1 5.7905 -6.4608 7.4464 44 1 3.9528 -7.5912 8.6679 45 1 3.7768 -8.7515 7.3297 46 1 6.1151 -9.5025 7.6741 47 1 6.2906 -8.3418 9.0123 48 1 7.6734 -11.4754 10.3653 49 1 0.9860 -4.1336 3.5054 50 1 1.4926 -4.6330 1.8630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796078789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:03 Heat of formation + Delta-G solvation = -158.292734 kcal Electronic energy + Delta-G solvation = -28694.536179 eV Core-core repulsion = 24494.302649 eV Total energy + Delta-G solvation = -4200.233530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21712 -41.60820 -40.35228 -38.07181 -37.64625 -35.93323 -35.40102 -34.40624 -33.65987 -29.73112 -29.35995 -28.35535 -28.28020 -28.03268 -25.64238 -24.26276 -22.74788 -22.16896 -21.43313 -21.31828 -20.45039 -19.10467 -18.90201 -18.53230 -17.77053 -17.66578 -17.57044 -17.28031 -16.49517 -16.12293 -15.88440 -15.53412 -15.26732 -15.10221 -14.98290 -14.41648 -14.30993 -13.98124 -13.91258 -13.75040 -13.58651 -13.44560 -13.32090 -13.09614 -12.88886 -12.85592 -12.79968 -12.68132 -12.52839 -12.48256 -12.39560 -12.32887 -12.07736 -11.83723 -11.48772 -11.45963 -11.41698 -11.39985 -11.35501 -11.24676 -11.02358 -10.56021 -9.99276 -8.21055 -6.32696 0.85009 0.99428 1.41634 1.45463 1.46062 1.53751 1.71785 2.32682 2.42132 2.82649 3.12956 3.28160 3.37194 3.47782 3.75592 3.80702 3.83145 3.83654 3.95571 3.99996 4.05386 4.06952 4.31769 4.41188 4.48757 4.60189 4.62724 4.65595 4.69282 4.74079 4.77937 4.80286 4.85453 4.88868 4.89252 4.92292 4.94249 5.04679 5.08455 5.16091 5.28854 5.33808 5.40237 5.44206 5.51614 5.64378 5.80644 6.19620 6.34901 6.63862 6.83141 7.18749 7.36968 8.90787 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.001452 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.866184 B =19272.622911 C =19560.833920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.364 6.364 6 C 0.671 3.329 7 O -0.591 6.591 8 N -0.613 5.613 9 C 0.137 3.863 10 C -0.136 4.136 11 H 0.129 0.871 12 C -0.113 4.113 13 H 0.169 0.831 14 C 0.487 3.513 15 O -0.538 6.538 16 O -0.350 6.350 17 C 0.078 3.922 18 C -0.094 4.094 19 C 0.025 3.975 20 C -0.545 4.545 21 H 0.066 0.934 22 C 0.000 4.000 23 N -0.933 5.933 24 Si 0.968 3.032 25 H -0.266 1.266 26 H -0.284 1.284 27 H -0.265 1.265 28 C -0.143 4.143 29 H 0.128 0.872 30 C 0.154 3.846 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.067 0.933 46 H -0.004 1.004 47 H -0.003 1.003 48 H 0.264 0.736 49 H 0.108 0.892 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 26.627 -20.314 36.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.427 3.573 7 O -0.482 6.482 8 N -0.354 5.354 9 C 0.015 3.985 10 C -0.155 4.155 11 H 0.147 0.853 12 C -0.132 4.132 13 H 0.186 0.814 14 C 0.332 3.668 15 O -0.428 6.428 16 O -0.266 6.266 17 C 0.005 3.995 18 C -0.132 4.132 19 C -0.012 4.012 20 C -0.583 4.583 21 H 0.084 0.916 22 C -0.198 4.198 23 N -0.573 5.573 24 Si 0.792 3.208 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.190 1.190 28 C -0.162 4.162 29 H 0.146 0.854 30 C 0.034 3.966 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.015 0.985 47 H 0.016 0.984 48 H 0.073 0.927 49 H 0.126 0.874 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.844 26.556 -20.755 36.437 hybrid contribution 0.590 -1.180 0.611 1.454 sum -13.254 25.376 -20.143 35.005 Atomic orbital electron populations 1.22469 0.93801 1.03673 1.03695 1.22433 0.94695 0.92646 0.81330 1.21887 1.02390 0.90605 1.04404 1.22481 1.01549 1.02197 0.97553 1.86315 1.71447 1.22713 1.47393 1.17511 0.78441 0.80831 0.80510 1.90911 1.42651 1.71126 1.43482 1.47996 1.53140 1.13115 1.21127 1.22004 0.91803 0.95232 0.89442 1.23778 1.00873 0.90488 1.00395 0.85317 1.21828 0.99662 0.98536 0.93140 0.81360 1.23064 0.88770 0.78762 0.76232 1.90668 1.21640 1.69498 1.61004 1.86463 1.41391 1.44035 1.54748 1.23158 0.88354 0.91714 0.96300 1.21460 0.99177 0.95506 0.97033 1.18940 0.93678 0.93855 0.94748 1.21610 0.94243 1.17047 1.25411 0.91607 1.25992 0.95201 0.99767 0.98825 1.70093 1.04806 1.38409 1.43994 0.85455 0.77971 0.78483 0.78869 1.19082 1.20987 1.19022 1.23739 0.98942 1.01240 0.92312 0.85384 1.21818 0.94698 0.78599 1.01522 0.91761 0.89161 0.91972 0.91329 0.88021 0.91021 0.92040 0.89093 0.92160 0.87858 0.87478 0.91947 0.91755 0.91300 0.91425 0.98539 0.98439 0.92716 0.87373 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.37 71.98 0.60 -1.78 16 2 C 0.13 1.71 1.13 -10.79 -0.01 1.70 16 3 C -0.14 -1.06 8.85 71.99 0.64 -0.42 16 4 C -0.18 -2.57 8.37 71.98 0.60 -1.96 16 5 O -0.36 -6.41 9.41 -55.39 -0.52 -6.93 16 6 C 0.67 13.59 8.01 129.79 1.04 14.63 16 7 O -0.59 -14.77 12.15 19.82 0.24 -14.53 16 8 N -0.61 -9.71 3.32 -938.34 -3.11 -12.83 16 9 C 0.14 1.54 6.87 86.53 0.59 2.14 16 10 C -0.14 -1.99 6.56 -9.78 -0.06 -2.06 16 11 H 0.13 2.23 7.84 -2.39 -0.02 2.21 16 12 C -0.11 -1.86 5.84 -11.49 -0.07 -1.92 16 13 H 0.17 1.82 8.14 -2.38 -0.02 1.80 16 14 C 0.49 13.16 7.74 71.24 0.55 13.71 16 15 O -0.54 -17.94 16.11 21.96 0.35 -17.59 16 16 O -0.35 -10.72 10.22 -51.43 -0.53 -11.25 16 17 C 0.08 2.80 5.47 71.98 0.39 3.19 16 18 C -0.09 -3.81 5.53 30.59 0.17 -3.64 16 19 C 0.02 1.30 4.97 29.85 0.15 1.45 16 20 C -0.55 -30.57 9.11 25.60 0.23 -30.33 16 21 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 22 C 0.00 0.01 5.46 84.65 0.46 0.47 16 23 N -0.93 -56.43 13.29 21.44 0.28 -56.15 16 24 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 C -0.14 -2.14 6.86 -9.75 -0.07 -2.21 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 C 0.15 2.07 6.84 86.52 0.59 2.66 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.18 5.88 -2.39 -0.01 1.17 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 1.23 5.88 -2.39 -0.01 1.21 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 43 H 0.06 2.34 8.13 -2.38 -0.02 2.32 16 44 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 47 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 48 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 49 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.09 1.40 7.88 -2.39 -0.02 1.38 16 Total: -1.00 -72.37 411.14 5.48 -66.89 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.91 Total: 11.12 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.82 Total: -4.38 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -2.83 Total: -68.97 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.45 Total: -50.30 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.37 5.48 -66.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796078789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.398 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds