Wall clock time and date at job start Tue Mar 31 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00411 * 359.97438 * 13 12 11 15 15 O 1.34230 * 120.00046 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00265 * 179.97438 * 15 13 12 17 17 H 1.09006 * 110.43199 * 27.45655 * 16 15 13 18 18 C 1.54630 * 110.48934 * 149.99710 * 16 15 13 19 19 C 1.54482 * 101.76688 * 93.87855 * 18 16 15 20 20 N 1.46768 * 105.47002 * 25.41779 * 19 18 16 21 21 C 1.46495 * 124.34887 * 162.98270 * 20 19 18 22 22 C 1.53182 * 109.54408 * 239.55698 * 21 20 19 23 23 C 1.53093 * 109.16532 * 183.15481 * 22 21 20 24 24 O 1.42906 * 109.41680 * 57.60451 * 23 22 21 25 25 C 1.42900 * 114.09588 * 298.84625 * 24 23 22 26 26 C 1.53093 * 109.41848 * 61.15674 * 25 24 23 27 27 C 1.34423 * 111.30276 * 342.98157 * 20 19 18 28 28 O 1.21276 * 124.94492 * 180.44048 * 27 20 19 29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 37 37 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 38 38 H 1.08994 * 110.97138 * 212.00286 * 18 16 15 39 39 H 1.09004 * 110.96654 * 335.72694 * 18 16 15 40 40 H 1.08995 * 110.24520 * 144.41044 * 19 18 16 41 41 H 1.08996 * 110.24914 * 266.33534 * 19 18 16 42 42 H 1.08994 * 109.54551 * 359.82138 * 21 20 19 43 43 H 1.09005 * 109.51975 * 303.05912 * 22 21 20 44 44 H 1.08994 * 109.52385 * 63.24590 * 22 21 20 45 45 H 1.09002 * 109.47863 * 297.62446 * 23 22 21 46 46 H 1.08993 * 109.49183 * 177.59353 * 23 22 21 47 47 H 1.08997 * 109.48602 * 301.17315 * 25 24 23 48 48 H 1.09007 * 109.49001 * 181.14479 * 25 24 23 49 49 H 1.08998 * 109.52488 * 182.48017 * 26 25 24 50 50 H 1.09003 * 109.51882 * 62.29259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 6 7.5683 -4.0794 0.0010 14 8 8.1725 -3.0331 0.0005 15 8 8.2394 -5.2419 0.0010 16 6 9.6894 -5.1660 0.0010 17 1 10.0220 -4.2409 0.4720 18 6 10.2954 -6.3904 0.7253 19 6 10.5524 -7.3573 -0.4518 20 7 10.7063 -6.5021 -1.6346 21 6 11.3073 -6.9382 -2.8973 22 6 12.5242 -6.0635 -3.2147 23 6 13.0981 -6.4747 -4.5731 24 8 12.0856 -6.3505 -5.5739 25 6 10.9436 -7.1811 -5.3546 26 6 10.2831 -6.7983 -4.0276 27 6 10.2248 -5.2673 -1.4103 28 8 10.2199 -4.3657 -2.2214 29 1 -0.4850 0.8401 -0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6810 0.8905 32 1 3.6577 -3.1507 0.8897 33 1 3.6584 -3.1504 -0.8902 34 1 5.9147 -2.1229 -0.8901 35 1 5.9147 -2.1231 0.8899 36 1 5.6979 -4.5928 0.8906 37 1 5.6979 -4.5935 -0.8894 38 1 11.2279 -6.1264 1.2240 39 1 9.5841 -6.8166 1.4327 40 1 11.4643 -7.9287 -0.2783 41 1 9.7046 -8.0303 -0.5791 42 1 11.6174 -7.9797 -2.8131 43 1 12.2215 -5.0169 -3.2489 44 1 13.2818 -6.1995 -2.4430 45 1 13.4378 -7.5094 -4.5261 46 1 13.9384 -5.8273 -4.8239 47 1 11.2550 -8.2250 -5.3178 48 1 10.2316 -7.0427 -6.1683 49 1 9.4379 -7.4598 -3.8373 50 1 9.9352 -5.7666 -4.0783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:46 Heat of formation + Delta-G solvation = -179.055686 kcal Electronic energy + Delta-G solvation = -29681.373361 eV Core-core repulsion = 25480.239482 eV Total energy + Delta-G solvation = -4201.133879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54575 -40.29132 -39.14770 -37.04973 -36.50962 -35.11663 -34.34738 -32.63422 -31.59578 -30.76167 -30.17738 -27.90490 -26.19236 -25.24706 -24.05702 -23.06054 -22.19558 -21.45732 -20.70761 -20.08210 -19.53410 -18.01540 -17.61940 -16.94597 -16.64702 -16.54746 -16.39905 -15.97422 -15.66392 -15.55277 -15.08330 -14.97166 -14.36049 -14.23836 -14.17008 -14.09222 -13.68882 -13.34675 -13.09685 -12.83920 -12.68531 -12.64646 -12.39612 -12.22266 -12.13920 -11.79241 -11.75562 -11.67481 -11.57645 -11.42966 -11.16039 -10.83991 -10.79807 -10.58695 -10.51915 -10.18869 -9.87248 -9.76979 -9.67422 -9.53664 -9.18461 -9.13173 -8.49216 -6.00390 -3.98017 1.74949 2.16265 2.37885 2.80440 3.36092 3.43029 3.44447 3.48624 3.73133 3.83364 4.16596 4.21542 4.33414 4.40490 4.49409 4.50327 4.53897 4.67419 4.72261 4.83124 4.90983 4.95451 5.00508 5.09610 5.12163 5.17778 5.21232 5.22100 5.32505 5.34342 5.37227 5.50577 5.63401 5.69144 5.74491 5.94714 6.03726 6.13064 6.23478 6.33727 6.59652 6.61718 6.74291 6.75878 6.95839 7.36181 7.48844 7.67579 7.71668 7.84375 8.57952 9.04432 9.62807 11.13008 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.001961 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.384127 B =14275.054081 C =15018.831558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.108 4.108 13 C 0.457 3.543 14 O -0.490 6.490 15 O -0.339 6.339 16 C 0.052 3.948 17 H 0.119 0.881 18 C -0.130 4.130 19 C 0.103 3.897 20 N -0.613 5.613 21 C 0.162 3.838 22 C -0.174 4.174 23 C 0.067 3.933 24 O -0.379 6.379 25 C 0.067 3.933 26 C -0.175 4.175 27 C 0.508 3.492 28 O -0.498 6.498 29 H 0.262 0.738 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.051 0.949 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.675 -23.164 -2.411 37.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.150 4.150 12 C -0.146 4.146 13 C 0.299 3.701 14 O -0.375 6.375 15 O -0.257 6.257 16 C -0.007 4.007 17 H 0.137 0.863 18 C -0.167 4.167 19 C -0.020 4.020 20 N -0.348 5.348 21 C 0.059 3.941 22 C -0.212 4.212 23 C -0.011 4.011 24 O -0.298 6.298 25 C -0.010 4.010 26 C -0.213 4.213 27 C 0.293 3.707 28 O -0.372 6.372 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.096 0.904 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 29.768 -22.131 -3.059 37.219 hybrid contribution 0.404 0.711 0.348 0.889 sum 30.171 -21.419 -2.711 37.100 Atomic orbital electron populations 1.69920 1.06290 1.26831 1.51389 1.25044 0.94750 0.99232 0.94605 0.86774 0.80394 0.83548 0.78575 1.20292 1.21446 1.18930 1.21165 0.89576 0.94415 1.50607 0.91050 1.19580 0.97006 0.92307 0.96411 1.21468 0.90989 1.00200 1.01261 1.21625 0.97853 0.92179 1.03326 1.21592 0.85017 1.02202 1.05739 1.24369 0.92318 0.81387 0.72024 1.90699 1.70118 1.32603 1.44060 1.86660 1.18512 1.35950 1.84552 1.23322 0.79780 1.02468 0.95086 0.86298 1.22785 1.02372 0.94034 0.97510 1.22163 1.02635 0.93484 0.83718 1.48359 1.60649 1.12223 1.13596 1.20986 0.92718 0.98320 0.82040 1.22655 0.97427 1.02835 0.98321 1.22530 0.90818 1.00762 0.86941 1.87985 1.28818 1.65468 1.47516 1.22548 0.87959 0.93576 0.96964 1.22654 0.98816 1.05095 0.94742 1.20932 0.77937 0.82280 0.89519 1.90775 1.54967 1.41179 1.50237 0.92806 0.96970 0.96558 0.92540 0.92590 0.91419 0.91451 0.87564 0.87701 0.88060 0.87373 0.89833 0.90266 0.89101 0.89149 0.90598 0.93072 0.88428 0.93040 0.88291 0.90403 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -1.98 5.15 -26.74 -0.14 -2.12 16 11 C -0.11 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 13 C 0.46 6.51 7.96 36.01 0.29 6.79 16 14 O -0.49 -8.64 15.19 -18.75 -0.28 -8.92 16 15 O -0.34 -4.01 9.95 -39.26 -0.39 -4.40 16 16 C 0.05 0.53 3.29 -26.74 -0.09 0.45 16 17 H 0.12 1.34 7.14 -51.93 -0.37 0.97 16 18 C -0.13 -0.65 6.92 -25.10 -0.17 -0.82 16 19 C 0.10 0.47 7.30 -3.12 -0.02 0.45 16 20 N -0.61 -4.96 2.84 -164.64 -0.47 -5.42 16 21 C 0.16 1.16 2.84 -67.75 -0.19 0.97 16 22 C -0.17 -1.32 5.46 -26.59 -0.15 -1.47 16 23 C 0.07 0.45 6.84 37.21 0.25 0.70 16 24 O -0.38 -3.59 10.77 -35.23 -0.38 -3.97 16 25 C 0.07 0.48 6.84 37.21 0.25 0.74 16 26 C -0.17 -1.47 5.46 -26.59 -0.15 -1.62 16 27 C 0.51 6.07 7.09 -10.86 -0.08 5.99 16 28 O -0.50 -8.15 15.04 5.56 0.08 -8.06 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.42 8.11 -51.93 -0.42 -0.01 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 43 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.10 6.69 -51.93 -0.35 0.76 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -37.36 400.41 -8.91 -46.27 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -8.60 Total: -4.10 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.01 Total: -7.59 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.31 Total: -33.06 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.97 Total: -25.35 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.36 -8.91 -46.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.785 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds