Wall clock time and date at job start Tue Mar 31 2020 22:22:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86797 * 120.00530 * 2 1
4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1
5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1
6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1
7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9
13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10
14 14 O 1.20825 * 120.00411 * 359.97438 * 13 12 11
15 15 O 1.34230 * 120.00046 * 180.02562 * 13 12 11
16 16 C 1.45199 * 117.00265 * 179.97438 * 15 13 12
17 17 H 1.09006 * 110.43199 * 27.45655 * 16 15 13
18 18 C 1.54630 * 110.48934 * 149.99710 * 16 15 13
19 19 C 1.54482 * 101.76688 * 93.87855 * 18 16 15
20 20 N 1.46768 * 105.47002 * 25.41779 * 19 18 16
21 21 C 1.46495 * 124.34887 * 162.98270 * 20 19 18
22 22 C 1.53182 * 109.54408 * 239.55698 * 21 20 19
23 23 C 1.53093 * 109.16532 * 183.15481 * 22 21 20
24 24 O 1.42906 * 109.41680 * 57.60451 * 23 22 21
25 25 C 1.42900 * 114.09588 * 298.84625 * 24 23 22
26 26 C 1.53093 * 109.41848 * 61.15674 * 25 24 23
27 27 C 1.34423 * 111.30276 * 342.98157 * 20 19 18
28 28 O 1.21276 * 124.94492 * 180.44048 * 27 20 19
29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3
30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7
33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7
34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
36 36 H 1.09002 * 109.47153 * 300.00216 * 12 11 10
37 37 H 1.09001 * 109.47289 * 60.00300 * 12 11 10
38 38 H 1.08994 * 110.97138 * 212.00286 * 18 16 15
39 39 H 1.09004 * 110.96654 * 335.72694 * 18 16 15
40 40 H 1.08995 * 110.24520 * 144.41044 * 19 18 16
41 41 H 1.08996 * 110.24914 * 266.33534 * 19 18 16
42 42 H 1.08994 * 109.54551 * 359.82138 * 21 20 19
43 43 H 1.09005 * 109.51975 * 303.05912 * 22 21 20
44 44 H 1.08994 * 109.52385 * 63.24590 * 22 21 20
45 45 H 1.09002 * 109.47863 * 297.62446 * 23 22 21
46 46 H 1.08993 * 109.49183 * 177.59353 * 23 22 21
47 47 H 1.08997 * 109.48602 * 301.17315 * 25 24 23
48 48 H 1.09007 * 109.49001 * 181.14479 * 25 24 23
49 49 H 1.08998 * 109.52488 * 182.48017 * 26 25 24
50 50 H 1.09003 * 109.51882 * 62.29259 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1941 -0.0005
8 1 1.4644 -2.1294 -0.0005
9 6 3.5114 -1.1942 0.0000
10 6 4.0214 -2.6367 -0.0001
11 6 5.5513 -2.6368 -0.0001
12 6 6.0613 -4.0793 0.0004
13 6 7.5683 -4.0794 0.0010
14 8 8.1725 -3.0331 0.0005
15 8 8.2394 -5.2419 0.0010
16 6 9.6894 -5.1660 0.0010
17 1 10.0220 -4.2409 0.4720
18 6 10.2954 -6.3904 0.7253
19 6 10.5524 -7.3573 -0.4518
20 7 10.7063 -6.5021 -1.6346
21 6 11.3073 -6.9382 -2.8973
22 6 12.5242 -6.0635 -3.2147
23 6 13.0981 -6.4747 -4.5731
24 8 12.0856 -6.3505 -5.5739
25 6 10.9436 -7.1811 -5.3546
26 6 10.2831 -6.7983 -4.0276
27 6 10.2248 -5.2673 -1.4103
28 8 10.2199 -4.3657 -2.2214
29 1 -0.4850 0.8401 -0.0004
30 1 3.8751 -0.6798 -0.8895
31 1 3.8745 -0.6810 0.8905
32 1 3.6577 -3.1507 0.8897
33 1 3.6584 -3.1504 -0.8902
34 1 5.9147 -2.1229 -0.8901
35 1 5.9147 -2.1231 0.8899
36 1 5.6979 -4.5928 0.8906
37 1 5.6979 -4.5935 -0.8894
38 1 11.2279 -6.1264 1.2240
39 1 9.5841 -6.8166 1.4327
40 1 11.4643 -7.9287 -0.2783
41 1 9.7046 -8.0303 -0.5791
42 1 11.6174 -7.9797 -2.8131
43 1 12.2215 -5.0169 -3.2489
44 1 13.2818 -6.1995 -2.4430
45 1 13.4378 -7.5094 -4.5261
46 1 13.9384 -5.8273 -4.8239
47 1 11.2550 -8.2250 -5.3178
48 1 10.2316 -7.0427 -6.1683
49 1 9.4379 -7.4598 -3.8373
50 1 9.9352 -5.7666 -4.0783
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000805697465.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:46
Heat of formation + Delta-G solvation = -179.055686 kcal
Electronic energy + Delta-G solvation = -29681.373361 eV
Core-core repulsion = 25480.239482 eV
Total energy + Delta-G solvation = -4201.133879 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.54575 -40.29132 -39.14770 -37.04973 -36.50962 -35.11663 -34.34738 -32.63422
-31.59578 -30.76167 -30.17738 -27.90490 -26.19236 -25.24706 -24.05702 -23.06054
-22.19558 -21.45732 -20.70761 -20.08210 -19.53410 -18.01540 -17.61940 -16.94597
-16.64702 -16.54746 -16.39905 -15.97422 -15.66392 -15.55277 -15.08330 -14.97166
-14.36049 -14.23836 -14.17008 -14.09222 -13.68882 -13.34675 -13.09685 -12.83920
-12.68531 -12.64646 -12.39612 -12.22266 -12.13920 -11.79241 -11.75562 -11.67481
-11.57645 -11.42966 -11.16039 -10.83991 -10.79807 -10.58695 -10.51915 -10.18869
-9.87248 -9.76979 -9.67422 -9.53664 -9.18461 -9.13173 -8.49216 -6.00390
-3.98017 1.74949 2.16265 2.37885 2.80440 3.36092 3.43029 3.44447
3.48624 3.73133 3.83364 4.16596 4.21542 4.33414 4.40490 4.49409
4.50327 4.53897 4.67419 4.72261 4.83124 4.90983 4.95451 5.00508
5.09610 5.12163 5.17778 5.21232 5.22100 5.32505 5.34342 5.37227
5.50577 5.63401 5.69144 5.74491 5.94714 6.03726 6.13064 6.23478
6.33727 6.59652 6.61718 6.74291 6.75878 6.95839 7.36181 7.48844
7.67579 7.71668 7.84375 8.57952 9.04432 9.62807 11.13008
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.017003 B = 0.001961 C = 0.001864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1646.384127 B =14275.054081 C =15018.831558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.064 3.936
3 Si 0.880 3.120
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.265 1.265
7 C -0.520 4.520
8 H 0.071 0.929
9 C -0.016 4.016
10 C -0.102 4.102
11 C -0.112 4.112
12 C -0.108 4.108
13 C 0.457 3.543
14 O -0.490 6.490
15 O -0.339 6.339
16 C 0.052 3.948
17 H 0.119 0.881
18 C -0.130 4.130
19 C 0.103 3.897
20 N -0.613 5.613
21 C 0.162 3.838
22 C -0.174 4.174
23 C 0.067 3.933
24 O -0.379 6.379
25 C 0.067 3.933
26 C -0.175 4.175
27 C 0.508 3.492
28 O -0.498 6.498
29 H 0.262 0.738
30 H 0.012 0.988
31 H 0.016 0.984
32 H 0.056 0.944
33 H 0.055 0.945
34 H 0.067 0.933
35 H 0.067 0.933
36 H 0.106 0.894
37 H 0.105 0.895
38 H 0.101 0.899
39 H 0.108 0.892
40 H 0.083 0.917
41 H 0.079 0.921
42 H 0.091 0.909
43 H 0.090 0.910
44 H 0.075 0.925
45 H 0.051 0.949
46 H 0.098 0.902
47 H 0.051 0.949
48 H 0.099 0.901
49 H 0.077 0.923
50 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.675 -23.164 -2.411 37.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.136 4.136
3 Si 0.707 3.293
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.189 1.189
7 C -0.558 4.558
8 H 0.089 0.911
9 C -0.053 4.053
10 C -0.139 4.139
11 C -0.150 4.150
12 C -0.146 4.146
13 C 0.299 3.701
14 O -0.375 6.375
15 O -0.257 6.257
16 C -0.007 4.007
17 H 0.137 0.863
18 C -0.167 4.167
19 C -0.020 4.020
20 N -0.348 5.348
21 C 0.059 3.941
22 C -0.212 4.212
23 C -0.011 4.011
24 O -0.298 6.298
25 C -0.010 4.010
26 C -0.213 4.213
27 C 0.293 3.707
28 O -0.372 6.372
29 H 0.072 0.928
30 H 0.030 0.970
31 H 0.034 0.966
32 H 0.075 0.925
33 H 0.074 0.926
34 H 0.086 0.914
35 H 0.085 0.915
36 H 0.124 0.876
37 H 0.123 0.877
38 H 0.119 0.881
39 H 0.126 0.874
40 H 0.102 0.898
41 H 0.097 0.903
42 H 0.109 0.891
43 H 0.109 0.891
44 H 0.094 0.906
45 H 0.069 0.931
46 H 0.116 0.884
47 H 0.070 0.930
48 H 0.117 0.883
49 H 0.096 0.904
50 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 29.768 -22.131 -3.059 37.219
hybrid contribution 0.404 0.711 0.348 0.889
sum 30.171 -21.419 -2.711 37.100
Atomic orbital electron populations
1.69920 1.06290 1.26831 1.51389 1.25044 0.94750 0.99232 0.94605
0.86774 0.80394 0.83548 0.78575 1.20292 1.21446 1.18930 1.21165
0.89576 0.94415 1.50607 0.91050 1.19580 0.97006 0.92307 0.96411
1.21468 0.90989 1.00200 1.01261 1.21625 0.97853 0.92179 1.03326
1.21592 0.85017 1.02202 1.05739 1.24369 0.92318 0.81387 0.72024
1.90699 1.70118 1.32603 1.44060 1.86660 1.18512 1.35950 1.84552
1.23322 0.79780 1.02468 0.95086 0.86298 1.22785 1.02372 0.94034
0.97510 1.22163 1.02635 0.93484 0.83718 1.48359 1.60649 1.12223
1.13596 1.20986 0.92718 0.98320 0.82040 1.22655 0.97427 1.02835
0.98321 1.22530 0.90818 1.00762 0.86941 1.87985 1.28818 1.65468
1.47516 1.22548 0.87959 0.93576 0.96964 1.22654 0.98816 1.05095
0.94742 1.20932 0.77937 0.82280 0.89519 1.90775 1.54967 1.41179
1.50237 0.92806 0.96970 0.96558 0.92540 0.92590 0.91419 0.91451
0.87564 0.87701 0.88060 0.87373 0.89833 0.90266 0.89101 0.89149
0.90598 0.93072 0.88428 0.93040 0.88291 0.90403 0.89152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16
2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16
4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16
7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16
8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16
9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16
10 C -0.10 -1.98 5.15 -26.74 -0.14 -2.12 16
11 C -0.11 -1.87 4.50 -26.74 -0.12 -1.99 16
12 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16
13 C 0.46 6.51 7.96 36.01 0.29 6.79 16
14 O -0.49 -8.64 15.19 -18.75 -0.28 -8.92 16
15 O -0.34 -4.01 9.95 -39.26 -0.39 -4.40 16
16 C 0.05 0.53 3.29 -26.74 -0.09 0.45 16
17 H 0.12 1.34 7.14 -51.93 -0.37 0.97 16
18 C -0.13 -0.65 6.92 -25.10 -0.17 -0.82 16
19 C 0.10 0.47 7.30 -3.12 -0.02 0.45 16
20 N -0.61 -4.96 2.84 -164.64 -0.47 -5.42 16
21 C 0.16 1.16 2.84 -67.75 -0.19 0.97 16
22 C -0.17 -1.32 5.46 -26.59 -0.15 -1.47 16
23 C 0.07 0.45 6.84 37.21 0.25 0.70 16
24 O -0.38 -3.59 10.77 -35.23 -0.38 -3.97 16
25 C 0.07 0.48 6.84 37.21 0.25 0.74 16
26 C -0.17 -1.47 5.46 -26.59 -0.15 -1.62 16
27 C 0.51 6.07 7.09 -10.86 -0.08 5.99 16
28 O -0.50 -8.15 15.04 5.56 0.08 -8.06 16
29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
30 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16
31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16
32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16
35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16
36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16
38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16
39 H 0.11 0.42 8.11 -51.93 -0.42 -0.01 16
40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16
41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
42 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16
43 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16
44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16
46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
47 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
48 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16
49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
50 H 0.09 1.10 6.69 -51.93 -0.35 0.76 16
LS Contribution 400.41 15.07 6.03 6.03
Total: -1.00 -37.36 400.41 -8.91 -46.27
By element:
Atomic # 1 Polarization: 4.49 SS G_CDS: -8.60 Total: -4.10 kcal
Atomic # 6 Polarization: -6.58 SS G_CDS: -1.01 Total: -7.59 kcal
Atomic # 7 Polarization: -33.36 SS G_CDS: 0.31 Total: -33.06 kcal
Atomic # 8 Polarization: -24.38 SS G_CDS: -0.97 Total: -25.35 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -37.36 -8.91 -46.27 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805697465.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.785 kcal
(2) G-P(sol) polarization free energy of solvation -37.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds