Wall clock time and date at job start Tue Mar 31 2020 22:22:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86797 * 120.00530 * 2 1
4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1
5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1
6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1
7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9
13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10
14 14 O 1.20825 * 120.00411 * 359.97438 * 13 12 11
15 15 O 1.34230 * 120.00046 * 180.02562 * 13 12 11
16 16 C 1.45199 * 117.00265 * 179.97438 * 15 13 12
17 17 H 1.09006 * 110.43199 * 27.45655 * 16 15 13
18 18 C 1.54630 * 110.48934 * 149.99710 * 16 15 13
19 19 C 1.54482 * 101.76688 * 93.87855 * 18 16 15
20 20 N 1.46768 * 105.47002 * 25.41779 * 19 18 16
21 21 C 1.46495 * 124.34887 * 162.98270 * 20 19 18
22 22 C 1.53182 * 109.54408 * 239.55698 * 21 20 19
23 23 C 1.53093 * 109.16532 * 183.15481 * 22 21 20
24 24 O 1.42906 * 109.41680 * 57.60451 * 23 22 21
25 25 C 1.42900 * 114.09588 * 298.84625 * 24 23 22
26 26 C 1.53093 * 109.41848 * 61.15674 * 25 24 23
27 27 C 1.34423 * 111.30276 * 342.98157 * 20 19 18
28 28 O 1.21276 * 124.94492 * 180.44048 * 27 20 19
29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3
30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7
33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7
34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
36 36 H 1.09002 * 109.47153 * 300.00216 * 12 11 10
37 37 H 1.09001 * 109.47289 * 60.00300 * 12 11 10
38 38 H 1.08994 * 110.97138 * 212.00286 * 18 16 15
39 39 H 1.09004 * 110.96654 * 335.72694 * 18 16 15
40 40 H 1.08995 * 110.24520 * 144.41044 * 19 18 16
41 41 H 1.08996 * 110.24914 * 266.33534 * 19 18 16
42 42 H 1.08994 * 109.54551 * 359.82138 * 21 20 19
43 43 H 1.09005 * 109.51975 * 303.05912 * 22 21 20
44 44 H 1.08994 * 109.52385 * 63.24590 * 22 21 20
45 45 H 1.09002 * 109.47863 * 297.62446 * 23 22 21
46 46 H 1.08993 * 109.49183 * 177.59353 * 23 22 21
47 47 H 1.08997 * 109.48602 * 301.17315 * 25 24 23
48 48 H 1.09007 * 109.49001 * 181.14479 * 25 24 23
49 49 H 1.08998 * 109.52488 * 182.48017 * 26 25 24
50 50 H 1.09003 * 109.51882 * 62.29259 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1941 -0.0005
8 1 1.4644 -2.1294 -0.0005
9 6 3.5114 -1.1942 0.0000
10 6 4.0214 -2.6367 -0.0001
11 6 5.5513 -2.6368 -0.0001
12 6 6.0613 -4.0793 0.0004
13 6 7.5683 -4.0794 0.0010
14 8 8.1725 -3.0331 0.0005
15 8 8.2394 -5.2419 0.0010
16 6 9.6894 -5.1660 0.0010
17 1 10.0220 -4.2409 0.4720
18 6 10.2954 -6.3904 0.7253
19 6 10.5524 -7.3573 -0.4518
20 7 10.7063 -6.5021 -1.6346
21 6 11.3073 -6.9382 -2.8973
22 6 12.5242 -6.0635 -3.2147
23 6 13.0981 -6.4747 -4.5731
24 8 12.0856 -6.3505 -5.5739
25 6 10.9436 -7.1811 -5.3546
26 6 10.2831 -6.7983 -4.0276
27 6 10.2248 -5.2673 -1.4103
28 8 10.2199 -4.3657 -2.2214
29 1 -0.4850 0.8401 -0.0004
30 1 3.8751 -0.6798 -0.8895
31 1 3.8745 -0.6810 0.8905
32 1 3.6577 -3.1507 0.8897
33 1 3.6584 -3.1504 -0.8902
34 1 5.9147 -2.1229 -0.8901
35 1 5.9147 -2.1231 0.8899
36 1 5.6979 -4.5928 0.8906
37 1 5.6979 -4.5935 -0.8894
38 1 11.2279 -6.1264 1.2240
39 1 9.5841 -6.8166 1.4327
40 1 11.4643 -7.9287 -0.2783
41 1 9.7046 -8.0303 -0.5791
42 1 11.6174 -7.9797 -2.8131
43 1 12.2215 -5.0169 -3.2489
44 1 13.2818 -6.1995 -2.4430
45 1 13.4378 -7.5094 -4.5261
46 1 13.9384 -5.8273 -4.8239
47 1 11.2550 -8.2250 -5.3178
48 1 10.2316 -7.0427 -6.1683
49 1 9.4379 -7.4598 -3.8373
50 1 9.9352 -5.7666 -4.0783
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000805697465.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:45
Heat of formation + Delta-G solvation = -204.020092 kcal
Electronic energy + Delta-G solvation = -29682.455899 eV
Core-core repulsion = 25480.239482 eV
Total energy + Delta-G solvation = -4202.216417 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.35817 -41.21054 -39.84465 -38.02865 -37.40039 -36.69651 -34.98968 -34.65792
-32.15810 -32.15039 -31.14082 -28.71248 -27.73435 -25.85343 -24.64329 -24.46302
-22.97085 -22.18709 -21.96410 -21.61085 -20.29057 -19.07365 -18.79450 -18.35601
-17.76624 -17.51010 -17.15279 -16.67571 -16.45828 -16.30246 -16.23545 -16.06153
-15.65696 -15.24332 -15.02904 -14.87462 -14.76818 -14.46473 -14.14638 -14.08187
-13.86714 -13.65471 -13.49908 -13.38678 -13.06367 -12.89162 -12.75454 -12.50731
-12.42213 -12.35839 -12.27979 -12.17166 -11.94974 -11.78049 -11.74699 -11.42143
-11.41456 -11.35203 -11.25892 -10.85290 -10.77074 -10.54165 -9.82505 -8.30551
-6.33390 0.84805 1.09530 1.34004 1.34862 1.47572 1.71385 1.93457
2.34652 2.92051 3.04804 3.06922 3.29149 3.52568 3.67104 3.68517
3.80730 3.89259 3.91726 3.99777 4.04113 4.05764 4.21753 4.30435
4.34035 4.44154 4.51487 4.55254 4.56677 4.67654 4.68399 4.69336
4.75798 4.77187 4.87734 4.96502 4.99315 5.05343 5.05538 5.10153
5.15207 5.16581 5.29324 5.53551 5.56552 5.62176 5.66870 5.93458
6.21924 6.28410 6.60059 6.74493 6.92174 7.31214 8.85887
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.017003 B = 0.001961 C = 0.001864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1646.384127 B =14275.054081 C =15018.831558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.004 3.996
3 Si 0.946 3.054
4 H -0.270 1.270
5 H -0.281 1.281
6 H -0.252 1.252
7 C -0.529 4.529
8 H 0.039 0.961
9 C -0.018 4.018
10 C -0.093 4.093
11 C -0.103 4.103
12 C -0.101 4.101
13 C 0.459 3.541
14 O -0.533 6.533
15 O -0.331 6.331
16 C 0.041 3.959
17 H 0.100 0.900
18 C -0.115 4.115
19 C 0.097 3.903
20 N -0.602 5.602
21 C 0.157 3.843
22 C -0.170 4.170
23 C 0.064 3.936
24 O -0.411 6.411
25 C 0.066 3.934
26 C -0.172 4.172
27 C 0.494 3.506
28 O -0.560 6.560
29 H 0.266 0.734
30 H 0.010 0.990
31 H 0.017 0.983
32 H 0.065 0.935
33 H 0.058 0.942
34 H 0.050 0.950
35 H 0.062 0.938
36 H 0.138 0.862
37 H 0.122 0.878
38 H 0.124 0.876
39 H 0.127 0.873
40 H 0.123 0.877
41 H 0.093 0.907
42 H 0.136 0.864
43 H 0.043 0.957
44 H 0.096 0.904
45 H 0.084 0.916
46 H 0.099 0.901
47 H 0.085 0.915
48 H 0.096 0.904
49 H 0.088 0.912
50 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.164 -26.239 -1.325 41.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.193 4.193
3 Si 0.770 3.230
4 H -0.195 1.195
5 H -0.206 1.206
6 H -0.175 1.175
7 C -0.567 4.567
8 H 0.057 0.943
9 C -0.055 4.055
10 C -0.130 4.130
11 C -0.141 4.141
12 C -0.138 4.138
13 C 0.303 3.697
14 O -0.421 6.421
15 O -0.247 6.247
16 C -0.018 4.018
17 H 0.118 0.882
18 C -0.152 4.152
19 C -0.024 4.024
20 N -0.335 5.335
21 C 0.055 3.945
22 C -0.208 4.208
23 C -0.012 4.012
24 O -0.331 6.331
25 C -0.010 4.010
26 C -0.211 4.211
27 C 0.280 3.720
28 O -0.438 6.438
29 H 0.075 0.925
30 H 0.029 0.971
31 H 0.035 0.965
32 H 0.084 0.916
33 H 0.076 0.924
34 H 0.069 0.931
35 H 0.081 0.919
36 H 0.156 0.844
37 H 0.140 0.860
38 H 0.143 0.857
39 H 0.146 0.854
40 H 0.141 0.859
41 H 0.111 0.889
42 H 0.153 0.847
43 H 0.061 0.939
44 H 0.114 0.886
45 H 0.102 0.898
46 H 0.118 0.882
47 H 0.103 0.897
48 H 0.114 0.886
49 H 0.106 0.894
50 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 32.276 -25.288 -1.951 41.049
hybrid contribution -0.377 1.564 -0.008 1.608
sum 31.898 -23.725 -1.959 39.802
Atomic orbital electron populations
1.70056 1.08053 1.28052 1.52838 1.25981 0.95632 1.03335 0.94366
0.85715 0.79456 0.78776 0.79060 1.19532 1.20625 1.17531 1.21526
0.92013 0.93266 1.49929 0.94268 1.19583 0.94014 0.95770 0.96183
1.21316 0.92866 0.96982 1.01858 1.21404 0.95616 0.94771 1.02320
1.21519 0.84250 0.99942 1.08118 1.24562 0.92855 0.81364 0.70893
1.90691 1.71072 1.34152 1.46170 1.86629 1.19739 1.34417 1.83901
1.23646 0.78644 1.04534 0.94941 0.88166 1.22933 1.03304 0.91296
0.97702 1.22548 1.05230 0.92979 0.81601 1.48522 1.58715 1.11318
1.14959 1.21223 0.91869 1.00278 0.81120 1.22593 0.98253 1.00204
0.99764 1.22695 0.90149 1.02728 0.85664 1.87942 1.29881 1.66569
1.48679 1.22652 0.87437 0.94887 0.96074 1.22599 0.99797 1.02231
0.96465 1.21347 0.78025 0.82941 0.89727 1.90742 1.57577 1.43417
1.52067 0.92517 0.97125 0.96468 0.91605 0.92365 0.93107 0.91941
0.84391 0.85968 0.85734 0.85439 0.85906 0.88893 0.84683 0.93858
0.88599 0.89763 0.88242 0.89719 0.88590 0.89390 0.94097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16
2 C 0.00 0.22 5.47 84.66 0.46 0.68 16
3 Si 0.95 46.48 27.47 68.60 1.88 48.36 16
4 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16
5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16
6 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16
7 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16
8 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16
9 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16
10 C -0.09 -3.55 5.15 30.59 0.16 -3.39 16
11 C -0.10 -3.38 4.50 30.59 0.14 -3.24 16
12 C -0.10 -2.46 5.81 29.85 0.17 -2.29 16
13 C 0.46 12.95 7.96 71.24 0.57 13.52 16
14 O -0.53 -19.40 15.19 21.97 0.33 -19.07 16
15 O -0.33 -7.46 9.95 -51.41 -0.51 -7.97 16
16 C 0.04 0.81 3.29 30.59 0.10 0.91 16
17 H 0.10 2.34 7.14 -2.38 -0.02 2.33 16
18 C -0.12 -0.75 6.92 31.65 0.22 -0.53 16
19 C 0.10 0.46 7.30 86.83 0.63 1.09 16
20 N -0.60 -8.57 2.84 -793.39 -2.25 -10.83 16
21 C 0.16 1.91 2.84 45.11 0.13 2.04 16
22 C -0.17 -2.45 5.46 30.69 0.17 -2.28 16
23 C 0.06 0.77 6.84 72.01 0.49 1.26 16
24 O -0.41 -7.68 10.77 -148.98 -1.60 -9.28 16
25 C 0.07 0.89 6.84 72.01 0.49 1.38 16
26 C -0.17 -2.85 5.46 30.68 0.17 -2.68 16
27 C 0.49 12.02 7.09 87.90 0.62 12.64 16
28 O -0.56 -19.98 15.04 -3.02 -0.05 -20.02 16
29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16
30 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16
31 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16
32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
34 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16
35 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16
36 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16
37 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16
38 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16
39 H 0.13 0.41 8.11 -2.38 -0.02 0.39 16
40 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16
41 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16
42 H 0.14 0.53 8.07 -2.39 -0.02 0.51 16
43 H 0.04 1.06 6.69 -2.38 -0.02 1.04 16
44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16
45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16
46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16
48 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16
49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
50 H 0.04 1.10 6.69 -2.39 -0.02 1.08 16
Total: -1.00 -88.30 400.41 3.85 -84.45
By element:
Atomic # 1 Polarization: 6.62 SS G_CDS: 0.86 Total: 7.48 kcal
Atomic # 6 Polarization: -17.57 SS G_CDS: 4.89 Total: -12.68 kcal
Atomic # 7 Polarization: -69.31 SS G_CDS: -1.95 Total: -71.26 kcal
Atomic # 8 Polarization: -54.52 SS G_CDS: -1.83 Total: -56.35 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.36 kcal
Total: -88.30 3.85 -84.45 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805697465.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -119.575 kcal
(2) G-P(sol) polarization free energy of solvation -88.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.873 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) -204.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds