Wall clock time and date at job start Tue Mar 31 2020 22:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00411 * 359.97438 * 13 12 11 15 15 O 1.34230 * 120.00046 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00265 * 179.97438 * 15 13 12 17 17 H 1.09006 * 110.43199 * 27.45655 * 16 15 13 18 18 C 1.54630 * 110.48934 * 149.99710 * 16 15 13 19 19 C 1.54482 * 101.76688 * 93.87855 * 18 16 15 20 20 N 1.46768 * 105.47002 * 25.41779 * 19 18 16 21 21 C 1.46495 * 124.34887 * 162.98270 * 20 19 18 22 22 C 1.53182 * 109.54408 * 239.55698 * 21 20 19 23 23 C 1.53093 * 109.16532 * 183.15481 * 22 21 20 24 24 O 1.42906 * 109.41680 * 57.60451 * 23 22 21 25 25 C 1.42900 * 114.09588 * 298.84625 * 24 23 22 26 26 C 1.53093 * 109.41848 * 61.15674 * 25 24 23 27 27 C 1.34423 * 111.30276 * 342.98157 * 20 19 18 28 28 O 1.21276 * 124.94492 * 180.44048 * 27 20 19 29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 37 37 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 38 38 H 1.08994 * 110.97138 * 212.00286 * 18 16 15 39 39 H 1.09004 * 110.96654 * 335.72694 * 18 16 15 40 40 H 1.08995 * 110.24520 * 144.41044 * 19 18 16 41 41 H 1.08996 * 110.24914 * 266.33534 * 19 18 16 42 42 H 1.08994 * 109.54551 * 359.82138 * 21 20 19 43 43 H 1.09005 * 109.51975 * 303.05912 * 22 21 20 44 44 H 1.08994 * 109.52385 * 63.24590 * 22 21 20 45 45 H 1.09002 * 109.47863 * 297.62446 * 23 22 21 46 46 H 1.08993 * 109.49183 * 177.59353 * 23 22 21 47 47 H 1.08997 * 109.48602 * 301.17315 * 25 24 23 48 48 H 1.09007 * 109.49001 * 181.14479 * 25 24 23 49 49 H 1.08998 * 109.52488 * 182.48017 * 26 25 24 50 50 H 1.09003 * 109.51882 * 62.29259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 6 7.5683 -4.0794 0.0010 14 8 8.1725 -3.0331 0.0005 15 8 8.2394 -5.2419 0.0010 16 6 9.6894 -5.1660 0.0010 17 1 10.0220 -4.2409 0.4720 18 6 10.2954 -6.3904 0.7253 19 6 10.5524 -7.3573 -0.4518 20 7 10.7063 -6.5021 -1.6346 21 6 11.3073 -6.9382 -2.8973 22 6 12.5242 -6.0635 -3.2147 23 6 13.0981 -6.4747 -4.5731 24 8 12.0856 -6.3505 -5.5739 25 6 10.9436 -7.1811 -5.3546 26 6 10.2831 -6.7983 -4.0276 27 6 10.2248 -5.2673 -1.4103 28 8 10.2199 -4.3657 -2.2214 29 1 -0.4850 0.8401 -0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6810 0.8905 32 1 3.6577 -3.1507 0.8897 33 1 3.6584 -3.1504 -0.8902 34 1 5.9147 -2.1229 -0.8901 35 1 5.9147 -2.1231 0.8899 36 1 5.6979 -4.5928 0.8906 37 1 5.6979 -4.5935 -0.8894 38 1 11.2279 -6.1264 1.2240 39 1 9.5841 -6.8166 1.4327 40 1 11.4643 -7.9287 -0.2783 41 1 9.7046 -8.0303 -0.5791 42 1 11.6174 -7.9797 -2.8131 43 1 12.2215 -5.0169 -3.2489 44 1 13.2818 -6.1995 -2.4430 45 1 13.4378 -7.5094 -4.5261 46 1 13.9384 -5.8273 -4.8239 47 1 11.2550 -8.2250 -5.3178 48 1 10.2316 -7.0427 -6.1683 49 1 9.4379 -7.4598 -3.8373 50 1 9.9352 -5.7666 -4.0783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:45 Heat of formation + Delta-G solvation = -204.020092 kcal Electronic energy + Delta-G solvation = -29682.455899 eV Core-core repulsion = 25480.239482 eV Total energy + Delta-G solvation = -4202.216417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.35817 -41.21054 -39.84465 -38.02865 -37.40039 -36.69651 -34.98968 -34.65792 -32.15810 -32.15039 -31.14082 -28.71248 -27.73435 -25.85343 -24.64329 -24.46302 -22.97085 -22.18709 -21.96410 -21.61085 -20.29057 -19.07365 -18.79450 -18.35601 -17.76624 -17.51010 -17.15279 -16.67571 -16.45828 -16.30246 -16.23545 -16.06153 -15.65696 -15.24332 -15.02904 -14.87462 -14.76818 -14.46473 -14.14638 -14.08187 -13.86714 -13.65471 -13.49908 -13.38678 -13.06367 -12.89162 -12.75454 -12.50731 -12.42213 -12.35839 -12.27979 -12.17166 -11.94974 -11.78049 -11.74699 -11.42143 -11.41456 -11.35203 -11.25892 -10.85290 -10.77074 -10.54165 -9.82505 -8.30551 -6.33390 0.84805 1.09530 1.34004 1.34862 1.47572 1.71385 1.93457 2.34652 2.92051 3.04804 3.06922 3.29149 3.52568 3.67104 3.68517 3.80730 3.89259 3.91726 3.99777 4.04113 4.05764 4.21753 4.30435 4.34035 4.44154 4.51487 4.55254 4.56677 4.67654 4.68399 4.69336 4.75798 4.77187 4.87734 4.96502 4.99315 5.05343 5.05538 5.10153 5.15207 5.16581 5.29324 5.53551 5.56552 5.62176 5.66870 5.93458 6.21924 6.28410 6.60059 6.74493 6.92174 7.31214 8.85887 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.001961 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.384127 B =14275.054081 C =15018.831558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.103 4.103 12 C -0.101 4.101 13 C 0.459 3.541 14 O -0.533 6.533 15 O -0.331 6.331 16 C 0.041 3.959 17 H 0.100 0.900 18 C -0.115 4.115 19 C 0.097 3.903 20 N -0.602 5.602 21 C 0.157 3.843 22 C -0.170 4.170 23 C 0.064 3.936 24 O -0.411 6.411 25 C 0.066 3.934 26 C -0.172 4.172 27 C 0.494 3.506 28 O -0.560 6.560 29 H 0.266 0.734 30 H 0.010 0.990 31 H 0.017 0.983 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.164 -26.239 -1.325 41.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.055 4.055 10 C -0.130 4.130 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.303 3.697 14 O -0.421 6.421 15 O -0.247 6.247 16 C -0.018 4.018 17 H 0.118 0.882 18 C -0.152 4.152 19 C -0.024 4.024 20 N -0.335 5.335 21 C 0.055 3.945 22 C -0.208 4.208 23 C -0.012 4.012 24 O -0.331 6.331 25 C -0.010 4.010 26 C -0.211 4.211 27 C 0.280 3.720 28 O -0.438 6.438 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 32.276 -25.288 -1.951 41.049 hybrid contribution -0.377 1.564 -0.008 1.608 sum 31.898 -23.725 -1.959 39.802 Atomic orbital electron populations 1.70056 1.08053 1.28052 1.52838 1.25981 0.95632 1.03335 0.94366 0.85715 0.79456 0.78776 0.79060 1.19532 1.20625 1.17531 1.21526 0.92013 0.93266 1.49929 0.94268 1.19583 0.94014 0.95770 0.96183 1.21316 0.92866 0.96982 1.01858 1.21404 0.95616 0.94771 1.02320 1.21519 0.84250 0.99942 1.08118 1.24562 0.92855 0.81364 0.70893 1.90691 1.71072 1.34152 1.46170 1.86629 1.19739 1.34417 1.83901 1.23646 0.78644 1.04534 0.94941 0.88166 1.22933 1.03304 0.91296 0.97702 1.22548 1.05230 0.92979 0.81601 1.48522 1.58715 1.11318 1.14959 1.21223 0.91869 1.00278 0.81120 1.22593 0.98253 1.00204 0.99764 1.22695 0.90149 1.02728 0.85664 1.87942 1.29881 1.66569 1.48679 1.22652 0.87437 0.94887 0.96074 1.22599 0.99797 1.02231 0.96465 1.21347 0.78025 0.82941 0.89727 1.90742 1.57577 1.43417 1.52067 0.92517 0.97125 0.96468 0.91605 0.92365 0.93107 0.91941 0.84391 0.85968 0.85734 0.85439 0.85906 0.88893 0.84683 0.93858 0.88599 0.89763 0.88242 0.89719 0.88590 0.89390 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.00 0.22 5.47 84.66 0.46 0.68 16 3 Si 0.95 46.48 27.47 68.60 1.88 48.36 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 8 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 9 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 10 C -0.09 -3.55 5.15 30.59 0.16 -3.39 16 11 C -0.10 -3.38 4.50 30.59 0.14 -3.24 16 12 C -0.10 -2.46 5.81 29.85 0.17 -2.29 16 13 C 0.46 12.95 7.96 71.24 0.57 13.52 16 14 O -0.53 -19.40 15.19 21.97 0.33 -19.07 16 15 O -0.33 -7.46 9.95 -51.41 -0.51 -7.97 16 16 C 0.04 0.81 3.29 30.59 0.10 0.91 16 17 H 0.10 2.34 7.14 -2.38 -0.02 2.33 16 18 C -0.12 -0.75 6.92 31.65 0.22 -0.53 16 19 C 0.10 0.46 7.30 86.83 0.63 1.09 16 20 N -0.60 -8.57 2.84 -793.39 -2.25 -10.83 16 21 C 0.16 1.91 2.84 45.11 0.13 2.04 16 22 C -0.17 -2.45 5.46 30.69 0.17 -2.28 16 23 C 0.06 0.77 6.84 72.01 0.49 1.26 16 24 O -0.41 -7.68 10.77 -148.98 -1.60 -9.28 16 25 C 0.07 0.89 6.84 72.01 0.49 1.38 16 26 C -0.17 -2.85 5.46 30.68 0.17 -2.68 16 27 C 0.49 12.02 7.09 87.90 0.62 12.64 16 28 O -0.56 -19.98 15.04 -3.02 -0.05 -20.02 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 31 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.13 0.41 8.11 -2.38 -0.02 0.39 16 40 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.14 0.53 8.07 -2.39 -0.02 0.51 16 43 H 0.04 1.06 6.69 -2.38 -0.02 1.04 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.04 1.10 6.69 -2.39 -0.02 1.08 16 Total: -1.00 -88.30 400.41 3.85 -84.45 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.86 Total: 7.48 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 4.89 Total: -12.68 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.95 Total: -71.26 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -1.83 Total: -56.35 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.36 kcal Total: -88.30 3.85 -84.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.575 kcal (2) G-P(sol) polarization free energy of solvation -88.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds