Wall clock time and date at job start Tue Mar 31 2020 23:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 C 1.52996 * 109.47600 * 239.99859 * 2 1 3 5 5 O 1.45203 * 109.46814 * 119.99410 * 2 1 3 6 6 C 1.34634 * 116.99337 * 60.00678 * 5 2 1 7 7 O 1.21506 * 120.00630 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99359 * 179.97438 * 6 5 2 9 9 C 1.46935 * 120.62539 * 180.02562 * 8 6 5 10 10 C 1.53198 * 108.77104 * 233.62755 * 9 8 6 11 11 C 1.53044 * 109.31458 * 305.36763 * 10 9 8 12 12 C 1.52992 * 109.45949 * 181.38800 * 11 10 9 13 13 H 1.09007 * 115.56058 * 274.28062 * 12 11 10 14 14 C 1.53000 * 117.49985 * 128.59673 * 12 11 10 15 15 C 1.53000 * 117.50448 * 59.97136 * 12 11 10 16 16 H 1.09007 * 117.51045 * 0.02562 * 15 12 11 17 17 C 1.50694 * 117.49876 * 214.98198 * 15 12 11 18 18 O 1.21203 * 120.00203 * 359.97438 * 17 15 12 19 19 O 1.34312 * 119.99759 * 179.97438 * 17 15 12 20 20 C 1.34924 * 117.00282 * 180.02562 * 19 17 15 21 21 H 1.08002 * 119.99441 * 359.97438 * 20 19 17 22 22 C 1.38753 * 120.00042 * 180.27691 * 20 19 17 23 23 N 1.31444 * 120.00059 * 359.72295 * 22 20 19 24 24 Si 1.86801 * 119.99773 * 179.72216 * 22 20 19 25 25 H 1.48504 * 109.47306 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47021 * 119.99680 * 24 22 20 27 27 H 1.48501 * 109.47039 * 240.00097 * 24 22 20 28 28 C 1.53048 * 109.52552 * 61.36935 * 11 10 9 29 29 C 1.46922 * 120.63321 * 0.02562 * 8 6 5 30 30 H 1.08997 * 109.47545 * 300.00131 * 1 2 3 31 31 H 1.09008 * 109.46726 * 59.99953 * 1 2 3 32 32 H 1.08996 * 109.47171 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46721 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46845 * 299.99514 * 3 2 1 35 35 H 1.08997 * 109.47091 * 59.99591 * 3 2 1 36 36 H 1.08996 * 109.47055 * 300.00313 * 4 2 1 37 37 H 1.09003 * 109.46814 * 59.99837 * 4 2 1 38 38 H 1.08997 * 109.47283 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.58549 * 113.84480 * 9 8 6 40 40 H 1.08992 * 109.70832 * 353.48354 * 9 8 6 41 41 H 1.08990 * 109.49565 * 185.41556 * 10 9 8 42 42 H 1.08995 * 109.52334 * 65.33304 * 10 9 8 43 43 H 1.09006 * 109.45365 * 301.36217 * 11 10 9 44 44 H 1.09007 * 117.49997 * 145.02015 * 14 12 11 45 45 H 1.08995 * 117.51758 * 359.97438 * 14 12 11 46 46 H 0.97004 * 119.99524 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.49205 * 58.58287 * 28 11 10 48 48 H 1.08999 * 109.49211 * 178.67541 * 28 11 10 49 49 H 1.09001 * 109.58711 * 246.15703 * 29 8 6 50 50 H 1.08998 * 109.58666 * 6.43826 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0679 -2.6655 2.4168 9 6 1.6819 -4.0718 2.5971 10 6 1.0408 -4.2338 3.9790 11 6 1.9999 -3.7033 5.0472 12 6 1.3774 -3.8951 6.4315 13 1 0.7095 -3.0992 6.7613 14 6 2.2257 -4.5922 7.4971 15 6 1.0409 -5.3239 6.8631 16 1 1.2633 -6.1275 6.1610 17 6 -0.1886 -5.5232 7.7114 18 8 -0.8683 -4.5705 8.0267 19 8 -0.5312 -6.7565 8.1180 20 6 -1.6432 -6.8654 8.8742 21 1 -2.2131 -5.9834 9.1266 22 6 -2.0512 -8.1098 9.3330 23 7 -1.3573 -9.1832 9.0263 24 14 -3.5865 -8.2595 10.3865 25 1 -4.1820 -6.9140 10.5875 26 1 -4.5699 -9.1399 9.7060 27 1 -3.2278 -8.8433 11.7039 28 6 2.2602 -2.2143 4.8069 29 6 2.9157 -2.0296 3.4344 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2493 39 1 2.5662 -4.7052 2.5280 40 1 0.9662 -4.3581 1.8265 41 1 0.8374 -5.2883 4.1642 42 1 0.1080 -3.6712 4.0160 43 1 2.9415 -4.2498 4.9934 44 1 2.1158 -4.2551 8.5279 45 1 3.2271 -4.9147 7.2120 46 1 -1.6428 -10.0531 9.3467 47 1 1.3158 -1.6707 4.8357 48 1 2.9246 -1.8316 5.5817 49 1 3.9005 -2.4968 3.4335 50 1 3.0154 -0.9667 3.2147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811435832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:01 Heat of formation + Delta-G solvation = -167.814629 kcal Electronic energy + Delta-G solvation = -29994.102774 eV Core-core repulsion = 25793.456344 eV Total energy + Delta-G solvation = -4200.646431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95203 -41.25892 -39.97549 -38.46133 -37.43496 -36.64435 -35.08256 -34.32253 -33.24186 -32.08380 -28.35726 -28.27512 -28.18725 -26.98814 -25.36642 -24.34735 -23.46513 -22.05659 -21.46131 -20.74663 -20.21756 -19.90762 -19.07894 -18.51484 -17.67044 -17.24561 -16.93099 -16.55862 -16.29391 -16.24072 -15.68622 -15.50272 -15.46071 -15.04300 -14.89826 -14.77318 -14.37494 -14.21665 -13.79070 -13.61747 -13.53211 -13.23619 -13.20381 -13.11275 -13.07493 -12.86162 -12.84413 -12.47663 -12.43823 -12.30891 -12.24068 -12.17959 -12.04818 -11.95341 -11.87196 -11.69647 -11.37455 -11.21418 -11.07975 -10.97371 -10.84717 -10.72314 -9.75279 -8.56933 -6.36947 1.14854 1.24275 1.31536 1.50125 1.55439 1.76325 2.08332 2.62668 2.80267 2.85851 2.99993 3.64416 3.68682 3.76410 3.79790 3.81748 3.96468 3.98242 4.08150 4.15976 4.32050 4.32199 4.37509 4.52310 4.59430 4.61949 4.62653 4.70764 4.77388 4.77544 4.83547 4.85081 4.86411 4.88669 4.89617 4.94398 5.04789 5.09121 5.14496 5.18784 5.20435 5.26074 5.28994 5.34457 5.47230 5.51546 5.56225 5.80881 6.33160 6.64700 6.88180 7.28330 7.76540 8.64191 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002022 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.565656 B =13844.016155 C =14245.325447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.364 6.364 6 C 0.645 3.355 7 O -0.599 6.599 8 N -0.595 5.595 9 C 0.133 3.867 10 C -0.129 4.129 11 C -0.045 4.045 12 C -0.099 4.099 13 H 0.091 0.909 14 C -0.125 4.125 15 C -0.170 4.170 16 H 0.139 0.861 17 C 0.421 3.579 18 O -0.589 6.589 19 O -0.243 6.243 20 C -0.422 4.422 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.901 5.901 24 Si 1.018 2.982 25 H -0.267 1.267 26 H -0.259 1.259 27 H -0.257 1.257 28 C -0.121 4.121 29 C 0.114 3.886 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.279 0.721 47 H 0.050 0.950 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.043 18.135 -17.550 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.279 6.279 6 C 0.401 3.599 7 O -0.490 6.490 8 N -0.335 5.335 9 C 0.012 3.988 10 C -0.168 4.168 11 C -0.063 4.063 12 C -0.118 4.118 13 H 0.109 0.891 14 C -0.162 4.162 15 C -0.189 4.189 16 H 0.157 0.843 17 C 0.270 3.730 18 O -0.487 6.487 19 O -0.151 6.151 20 C -0.498 4.498 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.539 5.539 24 Si 0.836 3.164 25 H -0.191 1.191 26 H -0.183 1.183 27 H -0.181 1.181 28 C -0.160 4.160 29 C -0.007 4.007 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.165 0.835 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.664 18.046 -17.739 28.758 hybrid contribution -1.427 -0.456 0.641 1.629 sum 12.237 17.590 -17.098 27.414 Atomic orbital electron populations 1.22475 0.94580 1.03385 1.03356 1.22399 0.94171 0.92912 0.81744 1.21870 1.02587 0.90454 1.04195 1.22448 1.01727 1.02055 0.97230 1.86292 1.71463 1.22903 1.47203 1.18214 0.78510 0.80925 0.82289 1.90878 1.42576 1.71080 1.44504 1.47185 1.52818 1.12381 1.21140 1.21646 1.01122 0.79103 0.96977 1.21956 0.98524 1.02138 0.94143 1.20777 0.98777 0.97455 0.89335 1.22441 1.01061 0.91593 0.96693 0.89104 1.23277 0.95152 0.99594 0.98135 1.21677 0.93808 0.99902 1.03533 0.84282 1.23561 0.87425 0.81326 0.80709 1.90497 1.55764 1.43100 1.59385 1.83889 1.42089 1.30178 1.58927 1.21433 1.02268 0.95486 1.30622 0.90435 1.26551 1.02622 0.93025 0.98291 1.70082 1.40273 0.99355 1.44163 0.84576 0.75297 0.79006 0.77493 1.19082 1.18304 1.18145 1.21925 1.01647 0.95026 0.97352 1.21921 0.93631 0.99431 0.85747 0.92403 0.89138 0.92363 0.90809 0.88122 0.91406 0.92208 0.89260 0.91639 0.88338 0.90376 0.90234 0.93797 0.87404 0.89693 0.83525 0.91128 0.93163 0.87817 0.88451 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 8.37 71.98 0.60 -2.73 16 2 C 0.12 2.11 1.13 -10.79 -0.01 2.09 16 3 C -0.13 -1.37 8.85 71.98 0.64 -0.74 16 4 C -0.18 -2.91 8.37 71.98 0.60 -2.30 16 5 O -0.36 -7.64 8.52 -55.43 -0.47 -8.12 16 6 C 0.65 15.91 7.74 129.79 1.00 16.91 16 7 O -0.60 -17.94 11.30 19.82 0.22 -17.71 16 8 N -0.59 -12.13 2.97 -949.19 -2.82 -14.95 16 9 C 0.13 2.67 6.43 86.36 0.56 3.22 16 10 C -0.13 -2.93 5.22 30.68 0.16 -2.77 16 11 C -0.05 -0.86 2.30 -10.77 -0.02 -0.89 16 12 C -0.10 -2.73 4.66 -10.80 -0.05 -2.78 16 13 H 0.09 3.00 7.64 -2.38 -0.02 2.98 16 14 C -0.12 -3.31 9.88 30.59 0.30 -3.01 16 15 C -0.17 -6.11 5.49 -11.54 -0.06 -6.17 16 16 H 0.14 4.49 7.60 -2.38 -0.02 4.47 16 17 C 0.42 21.94 7.69 71.23 0.55 22.49 16 18 O -0.59 -33.63 15.49 20.80 0.32 -33.31 16 19 O -0.24 -14.82 9.75 14.82 0.14 -14.67 16 20 C -0.42 -26.50 9.65 67.94 0.66 -25.84 16 21 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 22 C 0.00 -0.27 5.49 84.87 0.47 0.19 16 23 N -0.90 -54.18 13.67 21.62 0.30 -53.89 16 24 Si 1.02 44.46 29.55 68.60 2.03 46.48 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 C -0.12 -1.93 5.34 30.68 0.16 -1.77 16 29 C 0.11 1.61 6.45 86.37 0.56 2.17 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.88 7.01 -2.39 -0.02 1.86 16 41 H 0.08 1.89 7.24 -2.39 -0.02 1.87 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 1.49 7.90 -2.38 -0.02 1.47 16 44 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.15 2.61 8.05 -2.39 -0.02 2.59 16 46 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.10 1.31 6.92 -2.39 -0.02 1.29 16 Total: -1.00 -82.11 400.78 6.75 -75.36 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.92 Total: 22.71 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.10 Total: -1.92 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.53 Total: -68.83 kcal Atomic # 8 Polarization: -74.03 SS G_CDS: 0.22 Total: -73.81 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -82.11 6.75 -75.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811435832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.452 kcal (2) G-P(sol) polarization free energy of solvation -82.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds