Wall clock time and date at job start Tue Mar 31 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47171 * 299.99449 * 3 2 1 6 6 H 1.48497 * 109.47313 * 59.99825 * 3 2 1 7 7 C 1.37877 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00123 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47294 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47357 * 64.99641 * 12 11 10 14 14 C 1.34225 * 117.00187 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00188 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00000 * 179.97438 * 14 13 12 17 17 H 1.08994 * 110.88081 * 56.19202 * 16 14 13 18 18 C 1.54623 * 110.97021 * 292.37993 * 16 14 13 19 19 C 1.51283 * 104.25697 * 266.46195 * 18 16 14 20 20 O 1.21288 * 124.94358 * 164.01890 * 19 18 16 21 21 N 1.34417 * 110.11626 * 344.14222 * 19 18 16 22 22 C 1.46500 * 124.35313 * 179.43657 * 21 19 18 23 23 C 1.52997 * 109.47007 * 59.70513 * 22 21 19 24 24 C 1.53002 * 109.46817 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.47233 * 60.00194 * 24 23 22 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 C 1.46759 * 111.29650 * 359.17510 * 21 19 18 29 29 H 0.96997 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47094 * 59.99761 * 9 7 2 31 31 H 1.08995 * 109.47270 * 299.99890 * 9 7 2 32 32 H 1.09001 * 109.47313 * 60.00354 * 11 10 9 33 33 H 1.08999 * 109.47105 * 299.99600 * 11 10 9 34 34 H 1.09002 * 109.46930 * 305.00137 * 12 11 10 35 35 H 1.08997 * 109.47476 * 184.99795 * 12 11 10 36 36 H 1.09003 * 110.48770 * 25.35688 * 18 16 14 37 37 H 1.08996 * 110.48980 * 147.99852 * 18 16 14 38 38 H 1.09002 * 109.47092 * 179.70462 * 22 21 19 39 39 H 1.08993 * 109.47194 * 59.99623 * 23 22 21 40 40 H 1.09002 * 109.46695 * 299.99637 * 23 22 21 41 41 H 1.08992 * 109.47063 * 299.99823 * 24 23 22 42 42 H 1.09004 * 109.46733 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 44 44 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 47 47 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 49 49 H 1.09001 * 110.24611 * 136.27922 * 28 21 19 50 50 H 1.08998 * 110.24793 * 258.27540 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 8 3.3985 -5.8887 1.2419 14 6 4.3931 -6.7758 1.4017 15 8 4.6292 -7.5817 0.5330 16 6 5.2160 -6.7658 2.6641 17 1 4.5803 -6.8716 3.5431 18 6 6.0759 -5.4838 2.7540 19 6 7.4046 -5.8833 2.1511 20 8 8.2608 -5.1080 1.7812 21 7 7.4971 -7.2226 2.0824 22 6 8.6498 -7.9448 1.5385 23 6 9.9018 -7.5854 2.3412 24 6 11.1058 -8.3392 1.7728 25 6 11.3087 -7.9459 0.3082 26 6 10.0568 -8.3054 -0.4945 27 6 8.8527 -7.5517 0.0738 28 6 6.2974 -7.8684 2.6278 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.9453 -4.9822 -0.8903 33 1 0.9447 -4.9827 0.8897 34 1 3.3222 -5.7955 -0.8407 35 1 2.1821 -6.9375 -0.0893 36 1 5.6200 -4.6776 2.1793 37 1 6.2076 -5.1850 3.7939 38 1 8.4709 -9.0179 1.6056 39 1 9.7571 -7.8650 3.3847 40 1 10.0807 -6.5122 2.2740 41 1 10.9271 -9.4123 1.8395 42 1 11.9978 -8.0827 2.3444 43 1 11.4874 -6.8727 0.2415 44 1 12.1662 -8.4833 -0.0969 45 1 10.2013 -8.0257 -1.5380 46 1 9.8781 -9.3786 -0.4278 47 1 7.9607 -7.8081 -0.4977 48 1 9.0314 -6.4785 0.0071 49 1 5.9812 -8.6857 1.9796 50 1 6.4928 -8.2384 3.6343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815187930.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:14 Heat of formation + Delta-G solvation = -186.311240 kcal Electronic energy + Delta-G solvation = -30135.808742 eV Core-core repulsion = 25934.360238 eV Total energy + Delta-G solvation = -4201.448504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36678 -40.04718 -38.12987 -37.25154 -36.44541 -35.92087 -33.18329 -32.76608 -31.02142 -30.28183 -29.14086 -27.99569 -26.96009 -24.50293 -23.04105 -22.86310 -22.45568 -22.03621 -20.80164 -20.15542 -19.20896 -18.05437 -17.17067 -16.95596 -16.52553 -16.35733 -15.66611 -15.47296 -15.27556 -14.98252 -14.71258 -14.47019 -14.34361 -14.17240 -14.10715 -13.72669 -13.59453 -13.40446 -12.88766 -12.78429 -12.68144 -12.48136 -12.36632 -12.06052 -12.02618 -11.82010 -11.61019 -11.46015 -11.33743 -10.96093 -10.93241 -10.88074 -10.75533 -10.60776 -10.51449 -10.46378 -10.41220 -10.05380 -9.72352 -9.12604 -8.90210 -8.87369 -8.23354 -6.12846 -4.14365 2.08578 2.42743 2.57553 2.75219 3.29560 3.36256 3.43663 3.94068 4.05410 4.31801 4.39009 4.45142 4.48966 4.58261 4.66455 4.69962 4.86395 4.93613 4.99919 5.05044 5.13568 5.15534 5.20889 5.24049 5.24982 5.30589 5.32682 5.40064 5.42963 5.49945 5.63905 5.73292 5.74067 5.81280 5.83173 5.88475 5.95042 5.98518 6.03034 6.07510 6.14461 6.45410 6.49418 6.94242 7.02822 7.37589 7.69614 7.77961 8.04340 8.11053 8.50055 8.98657 9.50705 10.98692 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.002395 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.218923 B =11689.571484 C =12723.388531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.467 3.533 15 O -0.508 6.508 16 C -0.098 4.098 17 H 0.137 0.863 18 C -0.148 4.148 19 C 0.518 3.482 20 O -0.520 6.520 21 N -0.616 5.616 22 C 0.166 3.834 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.136 4.136 28 C 0.115 3.885 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.797 -22.366 6.975 28.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.251 6.251 14 C 0.310 3.690 15 O -0.396 6.396 16 C -0.117 4.117 17 H 0.155 0.845 18 C -0.188 4.188 19 C 0.306 3.694 20 O -0.396 6.396 21 N -0.350 5.350 22 C 0.064 3.936 23 C -0.173 4.173 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.152 4.152 27 C -0.175 4.175 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.387 -22.056 6.458 28.226 hybrid contribution -0.284 0.731 -0.130 0.795 sum 16.103 -21.324 6.328 27.460 Atomic orbital electron populations 1.69968 1.06103 1.27105 1.50641 1.24949 0.94991 0.99481 0.95094 0.86281 0.80136 0.82495 0.77629 1.19375 1.20839 1.20796 1.21085 0.94161 0.89243 1.50718 0.91428 1.20245 0.88729 0.83496 0.95505 1.87923 1.35318 1.12575 1.95223 1.22322 0.93183 0.85518 1.00618 1.23259 0.93676 0.98894 0.84042 1.86580 1.43114 1.53761 1.41661 1.23178 0.79167 0.78242 0.88447 1.90652 1.67623 1.38278 1.43074 1.21948 0.96029 0.97576 0.96189 0.84546 1.22422 0.93239 0.97845 1.05321 1.20797 0.88651 0.82144 0.77846 1.90721 1.44851 1.55019 1.48964 1.48372 1.18199 1.06674 1.61771 1.20951 0.83945 0.95626 0.93123 1.21947 0.93965 1.02581 0.98785 1.21471 0.97674 0.99844 0.96141 1.21576 0.97570 1.01801 0.95075 1.21472 0.94355 0.99925 0.99405 1.21943 0.98544 1.02348 0.94631 1.22058 0.83049 0.95423 1.00278 0.92688 0.97629 0.97459 0.91895 0.93131 0.90477 0.90320 0.86171 0.86097 0.89584 0.91930 0.90122 0.92028 0.91721 0.91657 0.91997 0.91641 0.92034 0.91491 0.90281 0.88578 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.16 9.43 -34.44 -0.32 -15.48 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.27 5.69 36.00 0.20 5.48 16 10 O -0.39 -9.34 10.30 -38.79 -0.40 -9.74 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.07 1.14 5.85 37.16 0.22 1.35 16 13 O -0.34 -5.17 10.17 -42.01 -0.43 -5.60 16 14 C 0.47 6.15 7.20 36.01 0.26 6.41 16 15 O -0.51 -7.59 15.28 -18.75 -0.29 -7.87 16 16 C -0.10 -0.88 3.66 -90.14 -0.33 -1.21 16 17 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.15 -1.58 6.40 -26.74 -0.17 -1.75 16 19 C 0.52 6.76 7.41 -10.86 -0.08 6.68 16 20 O -0.52 -8.69 15.12 5.55 0.08 -8.60 16 21 N -0.62 -6.40 2.83 -164.84 -0.47 -6.86 16 22 C 0.17 1.57 2.75 -67.93 -0.19 1.38 16 23 C -0.13 -1.20 5.20 -26.73 -0.14 -1.34 16 24 C -0.11 -0.82 5.92 -26.73 -0.16 -0.98 16 25 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 26 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 27 C -0.14 -1.47 5.21 -26.73 -0.14 -1.61 16 28 C 0.12 0.90 6.63 -3.12 -0.02 0.88 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.12 1.57 7.89 -51.93 -0.41 1.16 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.66 8.07 -51.93 -0.42 0.25 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.94 6.75 -51.93 -0.35 0.59 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.07 6.82 -51.93 -0.35 0.72 16 49 H 0.10 0.80 7.02 -51.93 -0.36 0.43 16 50 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -35.30 403.88 -9.37 -44.67 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.63 Total: -3.42 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.05 Total: 0.42 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.27 Total: -32.90 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.03 Total: -31.81 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.30 -9.37 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187930.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.641 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds