Wall clock time and date at job start Tue Mar 31 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47171 * 299.99449 * 3 2 1 6 6 H 1.48497 * 109.47313 * 59.99825 * 3 2 1 7 7 C 1.37877 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00123 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47294 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47357 * 64.99641 * 12 11 10 14 14 C 1.34225 * 117.00187 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00188 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00000 * 179.97438 * 14 13 12 17 17 H 1.08994 * 110.88081 * 56.19202 * 16 14 13 18 18 C 1.54623 * 110.97021 * 292.37993 * 16 14 13 19 19 C 1.51283 * 104.25697 * 266.46195 * 18 16 14 20 20 O 1.21288 * 124.94358 * 164.01890 * 19 18 16 21 21 N 1.34417 * 110.11626 * 344.14222 * 19 18 16 22 22 C 1.46500 * 124.35313 * 179.43657 * 21 19 18 23 23 C 1.52997 * 109.47007 * 59.70513 * 22 21 19 24 24 C 1.53002 * 109.46817 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.47233 * 60.00194 * 24 23 22 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 C 1.46759 * 111.29650 * 359.17510 * 21 19 18 29 29 H 0.96997 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47094 * 59.99761 * 9 7 2 31 31 H 1.08995 * 109.47270 * 299.99890 * 9 7 2 32 32 H 1.09001 * 109.47313 * 60.00354 * 11 10 9 33 33 H 1.08999 * 109.47105 * 299.99600 * 11 10 9 34 34 H 1.09002 * 109.46930 * 305.00137 * 12 11 10 35 35 H 1.08997 * 109.47476 * 184.99795 * 12 11 10 36 36 H 1.09003 * 110.48770 * 25.35688 * 18 16 14 37 37 H 1.08996 * 110.48980 * 147.99852 * 18 16 14 38 38 H 1.09002 * 109.47092 * 179.70462 * 22 21 19 39 39 H 1.08993 * 109.47194 * 59.99623 * 23 22 21 40 40 H 1.09002 * 109.46695 * 299.99637 * 23 22 21 41 41 H 1.08992 * 109.47063 * 299.99823 * 24 23 22 42 42 H 1.09004 * 109.46733 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 44 44 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 47 47 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 49 49 H 1.09001 * 110.24611 * 136.27922 * 28 21 19 50 50 H 1.08998 * 110.24793 * 258.27540 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 8 3.3985 -5.8887 1.2419 14 6 4.3931 -6.7758 1.4017 15 8 4.6292 -7.5817 0.5330 16 6 5.2160 -6.7658 2.6641 17 1 4.5803 -6.8716 3.5431 18 6 6.0759 -5.4838 2.7540 19 6 7.4046 -5.8833 2.1511 20 8 8.2608 -5.1080 1.7812 21 7 7.4971 -7.2226 2.0824 22 6 8.6498 -7.9448 1.5385 23 6 9.9018 -7.5854 2.3412 24 6 11.1058 -8.3392 1.7728 25 6 11.3087 -7.9459 0.3082 26 6 10.0568 -8.3054 -0.4945 27 6 8.8527 -7.5517 0.0738 28 6 6.2974 -7.8684 2.6278 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.9453 -4.9822 -0.8903 33 1 0.9447 -4.9827 0.8897 34 1 3.3222 -5.7955 -0.8407 35 1 2.1821 -6.9375 -0.0893 36 1 5.6200 -4.6776 2.1793 37 1 6.2076 -5.1850 3.7939 38 1 8.4709 -9.0179 1.6056 39 1 9.7571 -7.8650 3.3847 40 1 10.0807 -6.5122 2.2740 41 1 10.9271 -9.4123 1.8395 42 1 11.9978 -8.0827 2.3444 43 1 11.4874 -6.8727 0.2415 44 1 12.1662 -8.4833 -0.0969 45 1 10.2013 -8.0257 -1.5380 46 1 9.8781 -9.3786 -0.4278 47 1 7.9607 -7.8081 -0.4977 48 1 9.0314 -6.4785 0.0071 49 1 5.9812 -8.6857 1.9796 50 1 6.4928 -8.2384 3.6343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815187930.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:13 Heat of formation + Delta-G solvation = -208.041385 kcal Electronic energy + Delta-G solvation = -30136.751031 eV Core-core repulsion = 25934.360238 eV Total energy + Delta-G solvation = -4202.390794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29721 -41.07910 -38.96403 -38.74032 -37.75004 -37.04710 -34.96737 -33.94925 -31.73824 -31.72445 -30.00178 -29.04860 -28.78789 -25.49164 -24.54735 -23.83520 -23.58014 -23.36546 -21.72468 -20.94004 -20.09637 -19.03116 -18.71688 -18.07254 -17.96376 -17.76664 -17.04247 -16.49351 -16.47463 -16.30637 -16.19943 -15.74029 -15.25180 -15.20555 -15.00336 -14.88353 -14.59540 -14.34427 -14.25958 -13.87639 -13.71340 -13.45171 -13.28001 -13.19243 -13.14948 -12.98146 -12.88975 -12.74495 -12.67779 -12.45190 -12.35393 -12.07504 -12.01844 -11.75974 -11.61029 -11.48514 -11.30032 -11.28354 -11.23396 -10.91411 -10.69541 -10.28417 -9.70271 -8.34435 -6.45980 1.05159 1.38884 1.39425 1.44907 1.54570 1.59318 1.96593 2.32960 2.99466 3.04834 3.17137 3.25613 3.51609 3.66794 3.76732 3.79070 3.90521 3.98313 4.08029 4.18475 4.24697 4.27119 4.34512 4.40251 4.48481 4.49178 4.53926 4.57965 4.59014 4.60649 4.66416 4.77953 4.80985 4.84154 4.88330 4.98799 5.06253 5.16319 5.16624 5.21629 5.25685 5.34408 5.39101 5.45540 5.52870 5.67130 5.93668 6.09450 6.48221 6.62458 6.78607 7.10087 7.25641 8.77817 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.002395 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.218923 B =11689.571484 C =12723.388531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.209 3.791 10 O -0.411 6.411 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.354 6.354 14 C 0.462 3.538 15 O -0.529 6.529 16 C -0.087 4.087 17 H 0.182 0.818 18 C -0.145 4.145 19 C 0.504 3.496 20 O -0.571 6.571 21 N -0.613 5.613 22 C 0.161 3.839 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.134 4.134 28 C 0.115 3.885 29 H 0.272 0.728 30 H -0.008 1.008 31 H -0.007 1.007 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.039 0.961 49 H 0.096 0.904 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.331 -24.351 8.701 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.134 3.866 10 O -0.331 6.331 11 C -0.024 4.024 12 C 0.006 3.994 13 O -0.270 6.270 14 C 0.306 3.694 15 O -0.419 6.419 16 C -0.106 4.106 17 H 0.199 0.801 18 C -0.185 4.185 19 C 0.292 3.708 20 O -0.451 6.451 21 N -0.345 5.345 22 C 0.059 3.941 23 C -0.167 4.167 24 C -0.147 4.147 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.172 4.172 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.114 0.886 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.899 -24.098 8.190 30.551 hybrid contribution -0.483 1.257 -0.710 1.522 sum 16.415 -22.842 7.480 29.106 Atomic orbital electron populations 1.70052 1.07519 1.28615 1.50433 1.25888 0.95980 1.03149 0.93936 0.85194 0.78503 0.77621 0.78458 1.19374 1.19559 1.19319 1.21388 0.93920 0.91064 1.52298 0.92575 1.19861 0.88498 0.84262 0.93988 1.87870 1.35607 1.14295 1.95343 1.22663 0.94515 0.83269 1.01965 1.23177 0.92994 0.99368 0.83881 1.86578 1.44049 1.54896 1.41448 1.24066 0.78572 0.77185 0.89587 1.90639 1.68008 1.39069 1.44147 1.22189 0.96047 0.96917 0.95479 0.80068 1.22411 0.91954 0.97781 1.06398 1.21286 0.88992 0.82905 0.77601 1.90690 1.46660 1.56488 1.51274 1.48542 1.19178 1.06072 1.60753 1.21132 0.84115 0.96924 0.91930 1.21875 0.94508 1.00598 0.99677 1.21473 0.97093 1.00816 0.95284 1.21577 0.97877 1.00653 0.95898 1.21463 0.93464 1.00707 0.99090 1.21879 0.98963 1.00244 0.96129 1.22380 0.81214 0.94447 1.02598 0.91950 0.99070 0.98906 0.90230 0.92034 0.91938 0.86857 0.89291 0.82880 0.86607 0.90455 0.93729 0.89734 0.90998 0.93968 0.90136 0.92093 0.89839 0.93231 0.94226 0.88562 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.98 45.18 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.21 11.70 5.69 71.23 0.41 12.10 16 10 O -0.41 -20.25 10.30 -145.58 -1.50 -21.74 16 11 C 0.05 1.87 6.33 71.98 0.46 2.32 16 12 C 0.08 2.38 5.85 71.98 0.42 2.80 16 13 O -0.35 -10.76 10.17 -48.73 -0.50 -11.26 16 14 C 0.46 11.70 7.20 71.24 0.51 12.21 16 15 O -0.53 -15.43 15.28 21.96 0.34 -15.09 16 16 C -0.09 -1.36 3.66 -10.48 -0.04 -1.39 16 17 H 0.18 1.22 8.14 -2.39 -0.02 1.20 16 18 C -0.15 -3.01 6.40 30.59 0.20 -2.81 16 19 C 0.50 13.46 7.41 87.90 0.65 14.11 16 20 O -0.57 -20.62 15.12 -3.05 -0.05 -20.66 16 21 N -0.61 -12.08 2.83 -794.03 -2.25 -14.33 16 22 C 0.16 2.86 2.75 44.99 0.12 2.99 16 23 C -0.13 -2.18 5.20 30.59 0.16 -2.02 16 24 C -0.11 -1.37 5.92 30.60 0.18 -1.18 16 25 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 26 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 27 C -0.13 -3.01 5.21 30.60 0.16 -2.85 16 28 C 0.12 1.42 6.63 86.83 0.58 2.00 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 35 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 36 H 0.09 2.45 7.89 -2.39 -0.02 2.43 16 37 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.12 1.41 8.07 -2.39 -0.02 1.39 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.04 1.10 6.75 -2.39 -0.02 1.08 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.04 1.20 6.82 -2.39 -0.02 1.18 16 49 H 0.10 1.28 7.02 -2.39 -0.02 1.27 16 50 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -81.50 403.88 4.14 -77.36 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.91 Total: 10.70 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 4.87 Total: 3.05 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.96 Total: -69.55 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -1.71 Total: -68.76 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -81.50 4.14 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187930.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.681 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds