Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 120.00330 * 2 1 4 4 H 1.48498 * 109.47286 * 270.00080 * 3 2 1 5 5 H 1.48504 * 109.46997 * 30.00037 * 3 2 1 6 6 H 1.48496 * 109.47374 * 150.00002 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00189 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47511 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00171 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46876 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47128 * 64.99954 * 12 11 10 14 14 C 1.34222 * 117.00048 * 179.97438 * 13 12 11 15 15 O 1.20828 * 120.00270 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00181 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.88303 * 303.81157 * 16 14 13 18 18 C 1.54625 * 110.97056 * 67.62041 * 16 14 13 19 19 C 1.51287 * 104.25979 * 142.69982 * 18 16 14 20 20 O 1.21277 * 124.94818 * 164.01435 * 19 18 16 21 21 N 1.34426 * 110.10896 * 344.14986 * 19 18 16 22 22 C 1.46500 * 124.34758 * 179.43620 * 21 19 18 23 23 C 1.53006 * 109.46998 * 59.69596 * 22 21 19 24 24 C 1.52999 * 109.46626 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.46991 * 60.00378 * 24 23 22 26 26 C 1.52996 * 109.47131 * 299.99311 * 25 24 23 27 27 C 1.52997 * 109.47007 * 299.69737 * 22 21 19 28 28 C 1.46759 * 111.30167 * 359.16555 * 21 19 18 29 29 H 0.97006 * 119.99293 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47533 * 59.99515 * 9 7 2 31 31 H 1.09003 * 109.46580 * 299.99717 * 9 7 2 32 32 H 1.08997 * 109.46777 * 59.99794 * 11 10 9 33 33 H 1.09000 * 109.46748 * 299.99599 * 11 10 9 34 34 H 1.09000 * 109.47149 * 304.99754 * 12 11 10 35 35 H 1.09005 * 109.46915 * 184.99661 * 12 11 10 36 36 H 1.08997 * 110.48727 * 261.59867 * 18 16 14 37 37 H 1.08999 * 110.48544 * 24.10958 * 18 16 14 38 38 H 1.09001 * 109.47297 * 179.69235 * 22 21 19 39 39 H 1.08993 * 109.46955 * 300.00226 * 23 22 21 40 40 H 1.09000 * 109.47050 * 60.00054 * 23 22 21 41 41 H 1.09002 * 109.46719 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.47839 * 299.99931 * 24 23 22 43 43 H 1.09001 * 109.47289 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47611 * 59.99933 * 25 24 23 45 45 H 1.08996 * 109.47452 * 300.00000 * 26 25 24 46 46 H 1.09000 * 109.47054 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47153 * 299.99911 * 27 22 21 48 48 H 1.08996 * 109.46952 * 60.00083 * 27 22 21 49 49 H 1.09001 * 110.24430 * 136.28657 * 28 21 19 50 50 H 1.09002 * 110.24916 * 258.28668 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4124 -2.6543 0.0009 12 6 5.8068 -4.1326 0.0015 13 8 5.3725 -4.7499 -1.2390 14 6 5.6441 -6.0546 -1.3981 15 8 6.2252 -6.6611 -0.5295 16 6 5.2244 -6.7633 -2.6602 17 1 4.1516 -6.6616 -2.8246 18 6 6.0225 -6.2434 -3.8783 19 6 6.2566 -7.4759 -4.7239 20 8 6.6011 -7.4654 -5.8867 21 7 6.0243 -8.5843 -3.9997 22 6 6.1459 -9.9498 -4.5163 23 6 7.5780 -10.1863 -5.0003 24 6 7.7050 -11.6126 -5.5392 25 6 6.7340 -11.8054 -6.7057 26 6 5.3020 -11.5689 -6.2217 27 6 5.1749 -10.1420 -5.6829 28 6 5.6394 -8.2508 -2.6233 29 1 -0.4849 0.8402 -0.0004 30 1 3.8746 -0.6801 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 5.8151 -2.1708 0.8909 33 1 5.8151 -2.1708 -0.8891 34 1 5.3310 -4.6353 0.8435 35 1 6.8897 -4.2197 0.0909 36 1 5.4402 -5.5046 -4.4288 37 1 6.9729 -5.8169 -3.5577 38 1 5.9079 -10.6603 -3.7246 39 1 7.8159 -9.4758 -5.7918 40 1 8.2697 -10.0493 -4.1691 41 1 8.7253 -11.7813 -5.8836 42 1 7.4672 -12.3228 -4.7473 43 1 6.8248 -12.8214 -7.0900 44 1 6.9719 -11.0952 -7.4977 45 1 5.0641 -12.2790 -5.4299 46 1 4.6102 -11.7066 -7.0527 47 1 4.1547 -9.9734 -5.3381 48 1 5.4130 -9.4315 -6.4745 49 1 4.7995 -8.8690 -2.3062 50 1 6.4859 -8.3896 -1.9507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815187931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = -181.624865 kcal Electronic energy + Delta-G solvation = -29454.238464 eV Core-core repulsion = 25252.993177 eV Total energy + Delta-G solvation = -4201.245287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40424 -40.24713 -38.25782 -37.42738 -36.62064 -36.08669 -33.29000 -32.72668 -31.14133 -30.51277 -29.31555 -28.12497 -27.62568 -24.54323 -23.13597 -22.99035 -22.31246 -21.90579 -20.88774 -20.24975 -19.33798 -18.14797 -17.26956 -17.17721 -16.77711 -16.49058 -15.93160 -15.52089 -15.39171 -15.11463 -14.85584 -14.60984 -14.46532 -14.32979 -14.21608 -13.91469 -13.70040 -13.48455 -13.01869 -12.90129 -12.72224 -12.60068 -12.55182 -12.50726 -12.07428 -11.82772 -11.72257 -11.70313 -11.41621 -11.22913 -11.06612 -10.93198 -10.74767 -10.72060 -10.64284 -10.60769 -10.56333 -9.91489 -9.87512 -9.25393 -9.00055 -8.96186 -8.55438 -6.15858 -4.15479 1.99060 2.29822 2.32488 2.72888 3.21519 3.28662 3.29000 3.83995 3.95963 4.29877 4.31057 4.35299 4.37936 4.45844 4.47574 4.56932 4.75189 4.83071 4.85233 4.93588 5.03726 5.04993 5.12333 5.14611 5.15233 5.20068 5.21817 5.28704 5.38521 5.44648 5.50277 5.61101 5.61486 5.63432 5.70852 5.71354 5.83111 5.85876 5.87445 5.92580 6.01300 6.30961 6.38193 6.50580 6.78657 6.91818 7.52879 7.59879 7.87421 7.89892 8.58468 8.94910 9.42676 10.97013 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.001874 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.505967 B =14938.863322 C =15449.754566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.074 3.926 13 O -0.334 6.334 14 C 0.476 3.524 15 O -0.509 6.509 16 C -0.098 4.098 17 H 0.134 0.866 18 C -0.143 4.143 19 C 0.523 3.477 20 O -0.522 6.522 21 N -0.617 5.617 22 C 0.162 3.838 23 C -0.135 4.135 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.135 4.135 28 C 0.115 3.885 29 H 0.267 0.733 30 H 0.004 0.996 31 H 0.001 0.999 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.089 -22.504 -9.176 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.021 4.021 12 C 0.001 3.999 13 O -0.250 6.250 14 C 0.318 3.682 15 O -0.398 6.398 16 C -0.117 4.117 17 H 0.151 0.849 18 C -0.184 4.184 19 C 0.311 3.689 20 O -0.398 6.398 21 N -0.351 5.351 22 C 0.060 3.940 23 C -0.174 4.174 24 C -0.152 4.152 25 C -0.160 4.160 26 C -0.152 4.152 27 C -0.173 4.173 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.150 -22.740 -9.521 29.472 hybrid contribution 0.506 1.258 0.365 1.404 sum 16.657 -21.482 -9.156 28.684 Atomic orbital electron populations 1.69878 1.06054 1.27143 1.50116 1.24774 0.94831 0.98778 0.94599 0.86841 0.80292 0.83727 0.78815 1.19867 1.20746 1.19136 1.20862 0.88159 0.95364 1.51454 0.89934 1.20639 0.96343 0.79171 0.94503 1.87972 1.16574 1.29850 1.95097 1.22407 0.86224 0.92722 1.00752 1.23246 0.99217 0.93246 0.84234 1.86595 1.73136 1.23614 1.41611 1.22950 0.75878 0.81408 0.87966 1.90664 1.38888 1.67044 1.43234 1.21873 1.04092 0.94496 0.91283 0.84862 1.22340 1.02920 0.97953 0.95138 1.20688 0.76137 0.85436 0.86661 1.90713 1.46966 1.86619 1.15540 1.48458 1.68615 1.06230 1.11815 1.21012 0.95804 0.80950 0.96206 1.21947 0.95654 0.97914 1.01838 1.21476 0.99612 0.96066 0.98061 1.21572 0.94774 1.01535 0.98136 1.21486 0.96973 0.96046 1.00731 1.21956 0.98915 0.97945 0.98528 1.22046 1.02238 0.93117 0.83434 0.92309 0.97822 0.98131 0.91707 0.92941 0.90109 0.90144 0.86180 0.87337 0.89343 0.90140 0.91819 0.91658 0.91925 0.91928 0.91688 0.91915 0.91580 0.91645 0.90171 0.89186 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -15.21 9.99 -34.44 -0.34 -15.55 16 8 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 9 C 0.17 4.15 4.76 36.00 0.17 4.32 16 10 O -0.38 -8.40 10.30 -38.80 -0.40 -8.80 16 11 C 0.06 0.91 6.33 37.16 0.24 1.14 16 12 C 0.07 1.02 5.84 37.16 0.22 1.24 16 13 O -0.33 -4.81 10.19 -42.00 -0.43 -5.23 16 14 C 0.48 5.81 7.19 36.01 0.26 6.06 16 15 O -0.51 -7.02 15.25 -18.75 -0.29 -7.31 16 16 C -0.10 -0.89 3.66 -90.14 -0.33 -1.22 16 17 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.14 -1.32 6.41 -26.74 -0.17 -1.49 16 19 C 0.52 5.69 7.41 -10.85 -0.08 5.61 16 20 O -0.52 -7.30 15.12 5.56 0.08 -7.22 16 21 N -0.62 -5.49 2.83 -164.84 -0.47 -5.95 16 22 C 0.16 1.27 2.74 -67.93 -0.19 1.08 16 23 C -0.14 -1.08 5.20 -26.73 -0.14 -1.22 16 24 C -0.11 -0.71 5.92 -26.73 -0.16 -0.87 16 25 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 26 C -0.11 -0.72 5.92 -26.71 -0.16 -0.88 16 27 C -0.14 -1.08 5.21 -26.71 -0.14 -1.22 16 28 C 0.11 0.91 6.66 -3.12 -0.02 0.89 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 31 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 38 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.08 0.84 6.75 -51.93 -0.35 0.49 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.83 6.82 -51.93 -0.35 0.48 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.80 6.96 -51.93 -0.36 0.43 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -34.27 400.26 -9.05 -43.32 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -8.59 Total: -3.68 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.10 Total: -1.03 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.31 Total: -32.37 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.03 Total: -28.56 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.27 -9.05 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.304 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds