Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 120.00330 * 2 1 4 4 H 1.48498 * 109.47286 * 270.00080 * 3 2 1 5 5 H 1.48504 * 109.46997 * 30.00037 * 3 2 1 6 6 H 1.48496 * 109.47374 * 150.00002 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00189 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47511 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00171 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46876 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47128 * 64.99954 * 12 11 10 14 14 C 1.34222 * 117.00048 * 179.97438 * 13 12 11 15 15 O 1.20828 * 120.00270 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00181 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.88303 * 303.81157 * 16 14 13 18 18 C 1.54625 * 110.97056 * 67.62041 * 16 14 13 19 19 C 1.51287 * 104.25979 * 142.69982 * 18 16 14 20 20 O 1.21277 * 124.94818 * 164.01435 * 19 18 16 21 21 N 1.34426 * 110.10896 * 344.14986 * 19 18 16 22 22 C 1.46500 * 124.34758 * 179.43620 * 21 19 18 23 23 C 1.53006 * 109.46998 * 59.69596 * 22 21 19 24 24 C 1.52999 * 109.46626 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.46991 * 60.00378 * 24 23 22 26 26 C 1.52996 * 109.47131 * 299.99311 * 25 24 23 27 27 C 1.52997 * 109.47007 * 299.69737 * 22 21 19 28 28 C 1.46759 * 111.30167 * 359.16555 * 21 19 18 29 29 H 0.97006 * 119.99293 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47533 * 59.99515 * 9 7 2 31 31 H 1.09003 * 109.46580 * 299.99717 * 9 7 2 32 32 H 1.08997 * 109.46777 * 59.99794 * 11 10 9 33 33 H 1.09000 * 109.46748 * 299.99599 * 11 10 9 34 34 H 1.09000 * 109.47149 * 304.99754 * 12 11 10 35 35 H 1.09005 * 109.46915 * 184.99661 * 12 11 10 36 36 H 1.08997 * 110.48727 * 261.59867 * 18 16 14 37 37 H 1.08999 * 110.48544 * 24.10958 * 18 16 14 38 38 H 1.09001 * 109.47297 * 179.69235 * 22 21 19 39 39 H 1.08993 * 109.46955 * 300.00226 * 23 22 21 40 40 H 1.09000 * 109.47050 * 60.00054 * 23 22 21 41 41 H 1.09002 * 109.46719 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.47839 * 299.99931 * 24 23 22 43 43 H 1.09001 * 109.47289 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47611 * 59.99933 * 25 24 23 45 45 H 1.08996 * 109.47452 * 300.00000 * 26 25 24 46 46 H 1.09000 * 109.47054 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47153 * 299.99911 * 27 22 21 48 48 H 1.08996 * 109.46952 * 60.00083 * 27 22 21 49 49 H 1.09001 * 110.24430 * 136.28657 * 28 21 19 50 50 H 1.09002 * 110.24916 * 258.28668 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4124 -2.6543 0.0009 12 6 5.8068 -4.1326 0.0015 13 8 5.3725 -4.7499 -1.2390 14 6 5.6441 -6.0546 -1.3981 15 8 6.2252 -6.6611 -0.5295 16 6 5.2244 -6.7633 -2.6602 17 1 4.1516 -6.6616 -2.8246 18 6 6.0225 -6.2434 -3.8783 19 6 6.2566 -7.4759 -4.7239 20 8 6.6011 -7.4654 -5.8867 21 7 6.0243 -8.5843 -3.9997 22 6 6.1459 -9.9498 -4.5163 23 6 7.5780 -10.1863 -5.0003 24 6 7.7050 -11.6126 -5.5392 25 6 6.7340 -11.8054 -6.7057 26 6 5.3020 -11.5689 -6.2217 27 6 5.1749 -10.1420 -5.6829 28 6 5.6394 -8.2508 -2.6233 29 1 -0.4849 0.8402 -0.0004 30 1 3.8746 -0.6801 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 5.8151 -2.1708 0.8909 33 1 5.8151 -2.1708 -0.8891 34 1 5.3310 -4.6353 0.8435 35 1 6.8897 -4.2197 0.0909 36 1 5.4402 -5.5046 -4.4288 37 1 6.9729 -5.8169 -3.5577 38 1 5.9079 -10.6603 -3.7246 39 1 7.8159 -9.4758 -5.7918 40 1 8.2697 -10.0493 -4.1691 41 1 8.7253 -11.7813 -5.8836 42 1 7.4672 -12.3228 -4.7473 43 1 6.8248 -12.8214 -7.0900 44 1 6.9719 -11.0952 -7.4977 45 1 5.0641 -12.2790 -5.4299 46 1 4.6102 -11.7066 -7.0527 47 1 4.1547 -9.9734 -5.3381 48 1 5.4130 -9.4315 -6.4745 49 1 4.7995 -8.8690 -2.3062 50 1 6.4859 -8.3896 -1.9507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815187931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -202.519211 kcal Electronic energy + Delta-G solvation = -29455.144511 eV Core-core repulsion = 25252.993177 eV Total energy + Delta-G solvation = -4202.151334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25206 -41.18026 -38.97055 -38.77039 -37.76404 -37.10614 -34.88055 -33.97875 -31.85788 -31.71542 -30.12569 -29.48434 -28.86410 -25.43649 -24.01757 -23.80709 -23.56417 -23.36611 -21.72504 -20.94063 -20.09320 -19.09626 -19.06688 -18.06811 -18.01938 -17.64065 -16.97611 -16.75002 -16.42910 -16.36440 -16.07812 -15.73501 -15.23929 -15.04975 -14.98486 -14.87014 -14.69088 -14.58456 -14.38023 -14.13018 -13.80211 -13.55377 -13.36073 -13.29846 -13.13887 -12.99204 -12.79760 -12.65635 -12.53485 -12.37756 -12.22700 -12.02890 -11.85688 -11.71882 -11.67033 -11.54323 -11.33730 -11.28983 -11.21602 -10.92205 -10.72535 -10.38942 -9.74126 -8.36022 -6.44162 1.02668 1.35603 1.38590 1.44440 1.45698 1.49057 1.95478 2.30759 2.96388 2.97400 3.06725 3.21519 3.58325 3.63438 3.78123 3.79934 3.94046 3.99695 4.03422 4.15064 4.20599 4.26108 4.35271 4.40472 4.43081 4.50908 4.52898 4.54704 4.58403 4.59394 4.61728 4.70554 4.75250 4.81023 4.89660 4.98171 5.01646 5.08428 5.18118 5.23942 5.27960 5.36197 5.37391 5.44252 5.45663 5.63718 5.92348 6.02808 6.58796 6.61075 6.72582 7.05452 7.20011 8.80938 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.001874 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.505967 B =14938.863322 C =15449.754566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.546 4.546 8 H 0.029 0.971 9 C 0.178 3.822 10 O -0.406 6.406 11 C 0.048 3.952 12 C 0.074 3.926 13 O -0.353 6.353 14 C 0.479 3.521 15 O -0.525 6.525 16 C -0.091 4.091 17 H 0.146 0.854 18 C -0.139 4.139 19 C 0.517 3.483 20 O -0.560 6.560 21 N -0.612 5.612 22 C 0.156 3.844 23 C -0.131 4.131 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.131 4.131 28 C 0.119 3.881 29 H 0.272 0.728 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.049 0.951 49 H 0.113 0.887 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.847 -22.601 -8.507 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.584 4.584 8 H 0.047 0.953 9 C 0.103 3.897 10 O -0.326 6.326 11 C -0.029 4.029 12 C 0.001 3.999 13 O -0.269 6.269 14 C 0.322 3.678 15 O -0.415 6.415 16 C -0.111 4.111 17 H 0.164 0.836 18 C -0.179 4.179 19 C 0.306 3.694 20 O -0.440 6.440 21 N -0.344 5.344 22 C 0.055 3.945 23 C -0.170 4.170 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.170 4.170 28 C -0.004 4.004 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.131 0.869 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.924 -22.879 -8.833 30.376 hybrid contribution -0.063 1.162 0.163 1.175 sum 17.861 -21.717 -8.670 29.424 Atomic orbital electron populations 1.70043 1.08313 1.28755 1.51056 1.25871 0.95828 1.03509 0.93492 0.85592 0.79552 0.77339 0.79754 1.18506 1.20091 1.16433 1.21170 0.91107 0.93776 1.52361 0.95263 1.20354 0.93211 0.80709 0.95447 1.87912 1.20717 1.28553 1.95378 1.22779 0.82784 0.94713 1.02592 1.23278 1.00928 0.91812 0.83896 1.86590 1.73649 1.24796 1.41853 1.23378 0.75195 0.80669 0.88538 1.90655 1.39636 1.67096 1.44064 1.21910 1.04691 0.94849 0.89617 0.83628 1.22314 1.03294 0.97417 0.94886 1.20946 0.75731 0.86431 0.86325 1.90696 1.48839 1.87217 1.17203 1.48558 1.67537 1.06365 1.11955 1.21213 0.95619 0.80779 0.96865 1.21889 0.95809 0.98444 1.00849 1.21469 0.99849 0.95056 0.98432 1.21573 0.94843 1.01861 0.97739 1.21483 0.96989 0.95103 1.01303 1.21898 0.98944 0.98414 0.97715 1.22116 1.02995 0.92605 0.82652 0.91852 0.96434 0.96797 0.89232 0.91580 0.90964 0.86934 0.85874 0.86841 0.86859 0.93171 0.91800 0.91375 0.90181 0.90418 0.93517 0.90149 0.91399 0.91448 0.93244 0.86854 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.01 0.63 5.47 84.65 0.46 1.10 16 3 Si 0.96 42.23 27.47 68.60 1.88 44.12 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.55 -32.67 9.99 25.60 0.26 -32.42 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.18 8.57 4.76 71.23 0.34 8.91 16 10 O -0.41 -17.93 10.30 -145.57 -1.50 -19.42 16 11 C 0.05 1.43 6.33 71.98 0.46 1.89 16 12 C 0.07 1.91 5.84 71.98 0.42 2.34 16 13 O -0.35 -9.75 10.19 -48.69 -0.50 -10.24 16 14 C 0.48 11.09 7.19 71.24 0.51 11.60 16 15 O -0.52 -13.70 15.25 21.96 0.33 -13.36 16 16 C -0.09 -1.55 3.66 -10.48 -0.04 -1.59 16 17 H 0.15 2.14 8.14 -2.39 -0.02 2.13 16 18 C -0.14 -2.49 6.41 30.59 0.20 -2.30 16 19 C 0.52 11.35 7.41 87.90 0.65 12.00 16 20 O -0.56 -16.43 15.12 -3.02 -0.05 -16.47 16 21 N -0.61 -10.37 2.83 -794.02 -2.25 -12.62 16 22 C 0.16 2.27 2.74 44.99 0.12 2.40 16 23 C -0.13 -2.06 5.20 30.60 0.16 -1.90 16 24 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 25 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 26 C -0.11 -1.25 5.92 30.61 0.18 -1.07 16 27 C -0.13 -2.04 5.21 30.61 0.16 -1.88 16 28 C 0.12 1.68 6.66 86.83 0.58 2.26 16 29 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 30 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 31 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 35 H 0.11 2.18 8.13 -2.38 -0.02 2.16 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.11 1.92 7.89 -2.39 -0.02 1.90 16 38 H 0.11 1.12 8.07 -2.39 -0.02 1.10 16 39 H 0.05 1.10 6.75 -2.39 -0.02 1.09 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.09 6.82 -2.39 -0.02 1.07 16 49 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.09 1.39 6.96 -2.39 -0.02 1.37 16 Total: -1.00 -77.37 400.26 3.91 -73.46 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.86 Total: 13.87 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.82 Total: -0.95 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.95 Total: -70.99 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -1.71 Total: -59.51 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Total: -77.37 3.91 -73.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.057 kcal (2) G-P(sol) polarization free energy of solvation -77.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds