Wall clock time and date at job start Tue Mar 31 2020 23:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00307 * 2 1 4 4 C 1.46902 * 110.99800 * 123.95606 * 2 1 3 5 5 C 1.53002 * 109.46714 * 162.84487 * 4 2 1 6 6 C 1.52996 * 109.47331 * 306.94671 * 5 4 2 7 7 C 1.52998 * 109.46760 * 186.94514 * 5 4 2 8 8 N 1.46496 * 109.47055 * 66.94923 * 5 4 2 9 9 C 1.34774 * 120.00126 * 185.20577 * 8 5 4 10 10 O 1.21596 * 120.00106 * 0.02562 * 9 8 5 11 11 N 1.34780 * 120.00480 * 180.26963 * 9 8 5 12 12 C 1.40132 * 120.00350 * 175.22080 * 11 9 8 13 13 C 1.38690 * 120.07494 * 33.79806 * 12 11 9 14 14 C 1.38201 * 120.02132 * 179.71659 * 13 12 11 15 15 C 1.38542 * 120.17212 * 0.56237 * 14 13 12 16 16 F 1.35108 * 119.92306 * 179.73855 * 15 14 13 17 17 C 1.38345 * 120.15473 * 359.71521 * 15 14 13 18 18 C 1.38740 * 119.97485 * 0.02562 * 17 15 14 19 19 O 1.35778 * 120.08915 * 180.02562 * 18 17 15 20 20 C 1.34806 * 116.99497 * 5.85394 * 19 18 17 21 21 H 1.07998 * 120.00695 * 5.07359 * 20 19 18 22 22 C 1.38638 * 119.99750 * 185.07343 * 20 19 18 23 23 N 1.31574 * 119.99865 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47526 * 89.99616 * 24 22 20 26 26 H 1.48506 * 109.46934 * 209.99742 * 24 22 20 27 27 H 1.48505 * 109.47086 * 329.99443 * 24 22 20 28 28 H 1.09004 * 109.46764 * 296.04497 * 1 2 3 29 29 H 1.09003 * 109.47008 * 56.04188 * 1 2 3 30 30 H 1.09000 * 109.47211 * 176.04779 * 1 2 3 31 31 H 1.08998 * 109.46979 * 194.14569 * 3 2 1 32 32 H 1.09000 * 109.47080 * 314.14765 * 3 2 1 33 33 H 1.09003 * 109.46595 * 74.14799 * 3 2 1 34 34 H 1.08998 * 109.47071 * 42.84817 * 4 2 1 35 35 H 1.08994 * 109.47084 * 282.84514 * 4 2 1 36 36 H 1.08999 * 109.47055 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47143 * 299.99741 * 6 5 4 38 38 H 1.08995 * 109.47321 * 60.00405 * 6 5 4 39 39 H 1.09003 * 109.47473 * 300.00438 * 7 5 4 40 40 H 1.09003 * 109.47376 * 60.00466 * 7 5 4 41 41 H 1.09007 * 109.47512 * 180.02562 * 7 5 4 42 42 H 0.97002 * 120.00418 * 5.20737 * 8 5 4 43 43 H 0.97002 * 119.99378 * 355.22995 * 11 9 8 44 44 H 1.08006 * 119.99043 * 359.97438 * 13 12 11 45 45 H 1.08006 * 119.91336 * 180.25425 * 14 13 12 46 46 H 1.07996 * 120.01379 * 180.02562 * 17 15 14 47 47 H 0.97005 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4650 -1.1090 0.8851 6 6 3.6023 -1.7942 -0.4759 7 6 3.9648 -2.0503 1.9828 8 7 4.2621 0.1201 0.8957 9 6 5.5739 0.0753 0.5899 10 8 6.0958 -0.9853 0.3048 11 7 6.3085 1.2052 0.6049 12 6 7.6912 1.1450 0.3855 13 6 8.2167 0.1992 -0.4821 14 6 9.5800 0.1447 -0.7022 15 6 10.4266 1.0257 -0.0490 16 9 11.7591 0.9644 -0.2639 17 6 9.9107 1.9683 0.8223 18 6 8.5425 2.0321 1.0438 19 8 8.0336 2.9567 1.8981 20 6 8.8953 3.8606 2.4056 21 1 9.9204 3.8795 2.0661 22 6 8.4656 4.7661 3.3635 23 7 7.2170 4.7427 3.7775 24 14 9.6594 6.0192 4.0663 25 1 9.6238 7.2537 3.2416 26 1 9.2704 6.3449 5.4620 27 1 11.0331 5.4552 4.0542 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0561 1.3534 -0.2511 32 1 1.4576 1.9671 -0.7374 33 1 1.8637 1.8111 0.9886 34 1 1.4223 -1.6860 1.2525 35 1 1.9124 -0.1702 2.0464 36 1 4.6492 -2.0389 -0.6556 37 1 3.0093 -2.7088 -0.4838 38 1 3.2463 -1.1236 -1.2579 39 1 3.8670 -1.5622 2.9525 40 1 3.3718 -2.9649 1.9750 41 1 5.0119 -2.2944 1.8033 42 1 3.8457 0.9663 1.1227 43 1 5.8799 2.0601 0.7677 44 1 7.5600 -0.4923 -0.9891 45 1 9.9870 -0.5900 -1.3813 46 1 10.5726 2.6542 1.3299 47 1 6.9162 5.3765 4.4475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836459208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:58 Heat of formation + Delta-G solvation = -68.741075 kcal Electronic energy + Delta-G solvation = -30445.968912 eV Core-core repulsion = 26158.451079 eV Total energy + Delta-G solvation = -4287.517833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.80569 -41.91041 -40.72366 -39.19484 -37.95953 -36.13617 -35.42379 -34.30057 -32.84722 -31.02718 -29.59934 -28.46890 -28.04006 -27.89036 -27.36870 -24.37499 -23.65069 -23.05853 -21.89250 -20.78331 -20.12914 -19.57083 -19.16678 -18.15945 -17.13888 -16.93661 -16.77327 -16.66463 -16.51714 -16.05931 -15.98037 -15.76413 -15.64626 -15.41843 -15.22320 -15.14467 -14.85773 -14.17998 -14.06026 -13.98040 -13.69232 -13.42484 -13.33463 -13.11872 -13.01673 -12.91530 -12.65972 -12.58094 -12.49933 -12.39297 -12.30729 -12.15358 -12.06973 -11.86365 -11.65116 -11.05911 -10.82538 -10.68583 -10.00255 -9.51700 -9.28096 -8.70000 -8.50702 -6.16341 0.24905 0.49350 1.36960 1.43678 1.51889 1.65984 2.13261 2.14951 2.71728 2.97508 3.05108 3.16110 3.21952 3.48051 3.77363 3.98207 4.05423 4.18833 4.21280 4.28120 4.39471 4.40848 4.53093 4.63206 4.64368 4.72900 4.75377 4.80739 4.88483 4.98687 5.00597 5.03216 5.04758 5.07579 5.18260 5.24927 5.30928 5.35385 5.38691 5.54154 5.66499 5.73102 5.92669 5.96011 6.03713 6.09705 6.11784 6.94258 6.99905 7.55164 7.66010 8.69892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.003551 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.540943 B = 7884.066600 C = 9982.579466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.005 3.995 4 C 0.057 3.943 5 C 0.194 3.806 6 C -0.144 4.144 7 C -0.159 4.159 8 N -0.728 5.728 9 C 0.704 3.296 10 O -0.598 6.598 11 N -0.670 5.670 12 C 0.084 3.916 13 C -0.051 4.051 14 C -0.203 4.203 15 C 0.119 3.881 16 F -0.146 7.146 17 C -0.264 4.264 18 C 0.129 3.871 19 O -0.203 6.203 20 C -0.415 4.415 21 H 0.098 0.902 22 C -0.008 4.008 23 N -0.906 5.906 24 Si 1.010 2.990 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.259 1.259 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.402 0.598 43 H 0.410 0.590 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.134 0.866 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 -8.420 -6.160 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.144 4.144 4 C -0.072 4.072 5 C 0.109 3.891 6 C -0.202 4.202 7 C -0.218 4.218 8 N -0.386 5.386 9 C 0.405 3.595 10 O -0.478 6.478 11 N -0.317 5.317 12 C -0.012 4.012 13 C -0.072 4.072 14 C -0.222 4.222 15 C 0.099 3.901 16 F -0.124 7.124 17 C -0.285 4.285 18 C 0.075 3.925 19 O -0.108 6.108 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.208 4.208 23 N -0.542 5.542 24 Si 0.830 3.170 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.183 1.183 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.241 0.759 43 H 0.245 0.755 44 H 0.173 0.827 45 H 0.174 0.826 46 H 0.152 0.848 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.954 -9.466 -6.586 16.610 hybrid contribution 0.352 2.045 1.516 2.570 sum -11.603 -7.421 -5.069 14.676 Atomic orbital electron populations 1.22459 0.85901 1.03108 1.00907 1.61955 1.08908 1.13721 1.42697 1.22788 1.01598 0.89124 1.00869 1.22446 0.93124 1.00011 0.91594 1.20348 0.89127 0.83090 0.96564 1.22010 1.02266 1.00408 0.95548 1.22176 1.02248 0.99873 0.97509 1.45780 1.06874 1.12275 1.73712 1.16017 0.82037 0.83244 0.78182 1.90774 1.71532 1.29027 1.56435 1.42294 1.05456 1.09514 1.74408 1.16899 0.82116 1.01063 1.01155 1.20906 0.94818 0.96725 0.94740 1.20885 0.92681 1.02851 1.05829 1.17461 0.77019 0.97409 0.98198 1.91425 1.31381 1.95908 1.93734 1.20909 0.95257 1.05281 1.07034 1.19166 0.91146 0.91215 0.90942 1.83918 1.37063 1.36930 1.52890 1.21726 0.94120 1.10271 1.22963 0.88485 1.26350 0.98891 0.99823 0.95714 1.70126 1.16932 1.37132 1.30048 0.84695 0.77353 0.77203 0.77734 1.18748 1.19610 1.18310 0.95378 0.90838 0.90235 0.91331 0.90436 0.94974 0.87184 0.93808 0.92680 0.91010 0.92154 0.93047 0.89423 0.93217 0.75900 0.75498 0.82677 0.82575 0.84803 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.51 127.69 1.21 1.52 16 2 N -0.55 -9.33 3.91 -948.83 -3.71 -13.04 16 3 C 0.00 0.08 8.27 127.69 1.06 1.14 16 4 C 0.06 0.96 4.24 86.30 0.37 1.33 16 5 C 0.19 4.37 0.81 3.60 0.00 4.37 16 6 C -0.14 -3.40 8.08 71.98 0.58 -2.82 16 7 C -0.16 -3.73 8.47 71.98 0.61 -3.12 16 8 N -0.73 -19.46 3.69 -438.02 -1.62 -21.08 16 9 C 0.70 24.17 7.84 179.05 1.40 25.58 16 10 O -0.60 -22.65 9.93 -4.02 -0.04 -22.69 16 11 N -0.67 -25.09 5.21 -316.69 -1.65 -26.74 16 12 C 0.08 3.49 6.34 38.22 0.24 3.73 16 13 C -0.05 -1.92 8.70 22.37 0.19 -1.73 16 14 C -0.20 -7.14 10.02 22.33 0.22 -6.92 16 15 C 0.12 4.67 7.29 22.37 0.16 4.83 16 16 F -0.15 -5.40 17.26 44.97 0.78 -4.63 16 17 C -0.26 -11.75 9.11 22.42 0.20 -11.55 16 18 C 0.13 6.11 6.66 22.69 0.15 6.26 16 19 O -0.20 -11.02 9.31 -22.80 -0.21 -11.23 16 20 C -0.41 -22.61 9.44 67.92 0.64 -21.97 16 21 H 0.10 4.99 5.29 -2.91 -0.02 4.97 16 22 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 23 N -0.91 -50.90 13.67 21.61 0.30 -50.60 16 24 Si 1.01 40.82 29.55 68.60 2.03 42.85 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 28 H 0.03 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.07 0.86 8.02 -2.39 -0.02 0.84 16 30 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.07 1.43 5.51 -2.39 -0.01 1.42 16 32 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16 33 H 0.03 0.56 7.80 -2.39 -0.02 0.54 16 34 H 0.11 1.44 7.93 -2.39 -0.02 1.42 16 35 H 0.04 0.75 7.86 -2.39 -0.02 0.74 16 36 H 0.05 1.63 5.80 -2.39 -0.01 1.61 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.48 7.43 -2.39 -0.02 1.46 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.50 6.56 -2.38 -0.02 1.48 16 42 H 0.40 9.77 5.76 -92.71 -0.53 9.24 16 43 H 0.41 14.97 8.57 -92.71 -0.79 14.17 16 44 H 0.16 5.58 6.12 -2.91 -0.02 5.57 16 45 H 0.16 4.46 8.06 -2.91 -0.02 4.43 16 46 H 0.13 6.07 5.71 -2.91 -0.02 6.05 16 47 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -64.36 377.43 3.09 -61.27 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -0.30 Total: 45.19 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 7.52 Total: 0.69 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -6.68 Total: -111.46 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.25 Total: -33.92 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.78 Total: -4.63 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -64.36 3.09 -61.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836459208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.469 kcal (2) G-P(sol) polarization free energy of solvation -64.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds