Wall clock time and date at job start Tue Mar 31 2020 23:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46719 * 2 1 4 4 C 1.52992 * 109.47181 * 240.00435 * 2 1 3 5 5 C 1.52997 * 109.47299 * 120.00291 * 2 1 3 6 6 H 1.08997 * 109.46938 * 180.02562 * 5 2 1 7 7 C 1.53005 * 109.46975 * 299.99994 * 5 2 1 8 8 N 1.46899 * 109.47263 * 174.99771 * 7 5 2 9 9 N 1.46498 * 109.47014 * 59.99890 * 5 2 1 10 10 C 1.34778 * 119.99417 * 155.00200 * 9 5 2 11 11 O 1.21594 * 120.00343 * 0.27732 * 10 9 5 12 12 N 1.34777 * 119.99859 * 180.02562 * 10 9 5 13 13 C 1.40132 * 120.00393 * 174.46488 * 12 10 9 14 14 C 1.38697 * 120.07459 * 335.20989 * 13 12 10 15 15 C 1.38192 * 120.02373 * 179.69968 * 14 13 12 16 16 C 1.38549 * 120.17488 * 0.60070 * 15 14 13 17 17 F 1.35100 * 119.92578 * 179.69957 * 16 15 14 18 18 C 1.38348 * 120.15007 * 359.67621 * 16 15 14 19 19 C 1.38742 * 119.97493 * 0.02592 * 18 16 15 20 20 O 1.35777 * 120.08645 * 179.97438 * 19 18 16 21 21 C 1.34802 * 117.00002 * 5.16968 * 20 19 18 22 22 H 1.08000 * 120.00164 * 354.97561 * 21 20 19 23 23 C 1.38643 * 120.00142 * 174.98556 * 21 20 19 24 24 N 1.31570 * 119.99805 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47400 * 89.99785 * 25 23 21 27 27 H 1.48501 * 109.47232 * 209.99807 * 25 23 21 28 28 H 1.48501 * 109.47459 * 329.99650 * 25 23 21 29 29 H 1.09002 * 109.47537 * 299.99642 * 1 2 3 30 30 H 1.09001 * 109.47437 * 59.99842 * 1 2 3 31 31 H 1.09004 * 109.47531 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47289 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47955 * 300.00018 * 3 2 1 34 34 H 1.09007 * 109.47310 * 60.00468 * 3 2 1 35 35 H 1.09004 * 109.47054 * 300.00125 * 4 2 1 36 36 H 1.09005 * 109.47610 * 59.99742 * 4 2 1 37 37 H 1.08999 * 109.47503 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.47521 * 295.00023 * 7 5 2 39 39 H 1.09002 * 109.46938 * 55.00198 * 7 5 2 40 40 H 1.00909 * 110.99602 * 56.04595 * 8 7 5 41 41 H 1.00895 * 111.00285 * 179.97438 * 8 7 5 42 42 H 0.96995 * 120.00376 * 335.00073 * 9 5 2 43 43 H 0.97005 * 119.99976 * 354.45526 * 12 10 9 44 44 H 1.08007 * 119.98332 * 0.02562 * 14 13 12 45 45 H 1.07994 * 119.91553 * 180.30061 * 15 14 13 46 46 H 1.07995 * 120.01321 * 180.02562 * 18 16 15 47 47 H 0.96997 * 120.00148 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2493 7 6 1.5300 -0.0001 2.4985 8 7 1.9186 -0.7588 3.6948 9 7 1.5517 -2.1025 1.2491 10 6 2.2285 -3.0565 1.9186 11 8 3.2417 -2.7698 2.5267 12 7 1.7796 -4.3273 1.9181 13 6 2.5423 -5.3401 2.5151 14 6 3.9157 -5.1931 2.6415 15 6 4.6659 -6.1898 3.2359 16 6 4.0517 -7.3434 3.6959 17 9 4.7909 -8.3172 4.2708 18 6 2.6831 -7.5000 3.5684 19 6 1.9229 -6.5006 2.9782 20 8 0.5796 -6.6523 2.8514 21 6 0.0316 -7.7476 3.4144 22 1 0.6648 -8.4968 3.8662 23 6 -1.3450 -7.9125 3.4134 24 7 -2.1165 -6.9996 2.8634 25 14 -2.1044 -9.4306 4.1930 26 1 -2.3868 -9.1626 5.6261 27 1 -3.3706 -9.7657 3.4933 28 1 -1.1596 -10.5707 4.0795 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7207 -1.2495 38 1 1.9646 0.9986 2.5445 39 1 0.4436 0.0781 2.4548 40 1 2.9172 -0.9006 3.7245 41 1 1.5935 -0.3024 4.5339 42 1 0.7413 -2.3304 0.7673 43 1 0.9285 -4.5409 1.5047 44 1 4.3981 -4.2970 2.2799 45 1 5.7345 -6.0714 3.3378 46 1 2.2065 -8.3999 3.9281 47 1 -3.0796 -7.1147 2.8630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841144993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:31 Heat of formation + Delta-G solvation = -75.912957 kcal Electronic energy + Delta-G solvation = -30418.676348 eV Core-core repulsion = 26130.847519 eV Total energy + Delta-G solvation = -4287.828829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.14622 -40.38218 -39.18920 -37.96302 -36.18184 -34.19401 -33.75327 -32.81711 -32.32317 -29.30747 -28.35923 -27.79433 -27.58921 -26.51374 -25.41281 -22.87609 -22.14656 -21.47177 -20.29391 -19.13730 -18.24284 -18.07089 -17.41691 -16.71626 -15.90389 -15.68708 -15.43395 -15.14126 -14.90030 -14.85530 -14.44954 -14.29167 -14.15430 -13.92978 -13.67720 -13.57087 -13.40586 -13.18471 -13.12318 -13.03084 -12.44661 -12.22065 -12.16278 -12.07348 -11.92189 -11.59647 -11.58274 -11.31662 -11.03845 -10.93593 -10.81969 -10.70368 -10.63462 -10.47476 -9.71622 -9.64962 -9.32957 -8.89153 -8.75981 -8.33985 -7.75710 -6.89973 -6.53150 -4.10070 1.99061 2.22578 3.04573 3.10650 3.12503 3.16257 3.71202 3.90855 4.28930 4.48061 4.56388 4.57900 4.69842 4.90895 4.93850 5.06192 5.13798 5.23151 5.27234 5.27672 5.39831 5.47494 5.50338 5.55978 5.65852 5.69530 5.70849 5.83331 5.83505 5.89306 5.95878 6.12011 6.13387 6.17316 6.34532 6.65827 6.76723 6.81571 7.01701 7.05675 7.18698 7.28064 7.37281 7.46511 7.69895 7.79076 7.91645 8.47064 8.93088 9.09342 9.56187 10.64302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003485 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.587904 B = 8033.037897 C = 9837.486696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.084 0.916 7 C 0.046 3.954 8 N -0.838 5.838 9 N -0.730 5.730 10 C 0.720 3.280 11 O -0.580 6.580 12 N -0.667 5.667 13 C 0.095 3.905 14 C -0.066 4.066 15 C -0.223 4.223 16 C 0.119 3.881 17 F -0.154 7.154 18 C -0.256 4.256 19 C 0.151 3.849 20 O -0.172 6.172 21 C -0.390 4.390 22 H 0.093 0.907 23 C 0.042 3.958 24 N -0.861 5.861 25 Si 0.941 3.059 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.352 0.648 41 H 0.332 0.668 42 H 0.393 0.607 43 H 0.410 0.590 44 H 0.149 0.851 45 H 0.120 0.880 46 H 0.141 0.859 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 14.340 -6.293 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.072 3.928 6 H 0.102 0.898 7 C -0.086 4.086 8 N -0.370 5.370 9 N -0.385 5.385 10 C 0.421 3.579 11 O -0.458 6.458 12 N -0.312 5.312 13 C -0.001 4.001 14 C -0.086 4.086 15 C -0.243 4.243 16 C 0.099 3.901 17 F -0.133 7.133 18 C -0.277 4.277 19 C 0.096 3.904 20 O -0.076 6.076 21 C -0.466 4.466 22 H 0.111 0.889 23 C -0.162 4.162 24 N -0.496 5.496 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.227 0.773 43 H 0.245 0.755 44 H 0.166 0.834 45 H 0.138 0.862 46 H 0.159 0.841 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.244 14.188 -6.219 16.354 hybrid contribution -0.678 -0.365 0.512 0.924 sum 4.566 13.823 -5.707 15.636 Atomic orbital electron populations 1.21977 0.94114 1.02215 1.02125 1.20791 0.96277 0.95753 0.94840 1.21895 1.01188 0.94669 1.02108 1.21850 1.01178 1.00546 0.96186 1.20758 0.99148 0.80149 0.92722 0.89766 1.22359 1.00781 0.93969 0.91479 1.58576 1.21518 1.53565 1.03305 1.44916 1.30011 1.07442 1.56149 1.15597 0.83224 0.79864 0.79232 1.90721 1.26695 1.80928 1.47472 1.42230 1.24296 1.05120 1.59575 1.16694 0.90101 0.87799 1.05491 1.20788 0.90705 0.98820 0.98330 1.20481 0.99863 0.94658 1.09339 1.17448 0.88841 0.86309 0.97546 1.91398 1.77132 1.62023 1.82728 1.20811 0.92074 1.02890 1.11935 1.18709 0.85563 0.92193 0.93982 1.83901 1.13996 1.43444 1.66222 1.21315 0.90707 0.97388 1.37170 0.88949 1.25248 0.94948 0.99060 0.96958 1.70011 1.05046 1.33468 1.41073 0.85705 0.78777 0.79963 0.79015 1.19831 1.20250 1.19105 0.92027 0.92336 0.92318 0.92426 0.92229 0.92228 0.92155 0.92557 0.92535 0.95435 0.90996 0.83222 0.85673 0.77254 0.75455 0.83357 0.86190 0.84140 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.96 37.16 0.30 -0.88 16 2 C -0.08 -0.63 0.59 -154.52 -0.09 -0.72 16 3 C -0.14 -0.98 8.12 37.16 0.30 -0.68 16 4 C -0.14 -1.18 8.32 37.15 0.31 -0.88 16 5 C 0.18 1.95 1.65 -67.93 -0.11 1.84 16 6 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 7 C 0.05 0.50 5.76 -3.82 -0.02 0.48 16 8 N -0.84 -11.20 8.03 -10.36 -0.08 -11.28 16 9 N -0.73 -9.54 4.26 -58.68 -0.25 -9.79 16 10 C 0.72 12.31 7.65 -86.92 -0.67 11.65 16 11 O -0.58 -10.88 10.94 5.28 0.06 -10.82 16 12 N -0.67 -12.59 5.30 -14.07 -0.07 -12.67 16 13 C 0.09 2.01 6.45 -83.44 -0.54 1.47 16 14 C -0.07 -1.29 8.71 -39.43 -0.34 -1.63 16 15 C -0.22 -4.27 10.02 -39.48 -0.40 -4.67 16 16 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 17 F -0.15 -3.04 17.26 2.25 0.04 -3.01 16 18 C -0.26 -5.75 9.14 -39.35 -0.36 -6.11 16 19 C 0.15 3.57 6.66 -38.94 -0.26 3.31 16 20 O -0.17 -4.58 9.17 0.05 0.00 -4.58 16 21 C -0.39 -10.48 9.49 30.88 0.29 -10.19 16 22 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 23 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 24 N -0.86 -23.86 13.67 55.48 0.76 -23.10 16 25 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 29 H 0.06 0.49 6.32 -51.93 -0.33 0.17 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 6.50 -51.93 -0.34 0.17 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 35 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.26 6.71 -51.93 -0.35 -0.09 16 39 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 40 H 0.35 5.06 7.48 -39.29 -0.29 4.77 16 41 H 0.33 3.89 9.08 -39.29 -0.36 3.53 16 42 H 0.39 4.66 6.67 -40.82 -0.27 4.39 16 43 H 0.41 7.63 8.36 -40.82 -0.34 7.29 16 44 H 0.15 2.83 5.79 -52.48 -0.30 2.53 16 45 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 46 H 0.14 3.16 5.63 -52.49 -0.30 2.86 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -29.87 375.38 -7.15 -37.02 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -6.26 Total: 21.33 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.97 Total: -3.82 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.35 Total: -56.84 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.06 Total: -15.40 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.87 -7.15 -37.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841144993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.889 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds