Wall clock time and date at job start Tue Mar 31 2020 23:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46719 * 2 1 4 4 C 1.52992 * 109.47181 * 240.00435 * 2 1 3 5 5 C 1.52997 * 109.47299 * 120.00291 * 2 1 3 6 6 H 1.08997 * 109.46938 * 180.02562 * 5 2 1 7 7 C 1.53005 * 109.46975 * 299.99994 * 5 2 1 8 8 N 1.46899 * 109.47263 * 174.99771 * 7 5 2 9 9 N 1.46498 * 109.47014 * 59.99890 * 5 2 1 10 10 C 1.34778 * 119.99417 * 155.00200 * 9 5 2 11 11 O 1.21594 * 120.00343 * 0.27732 * 10 9 5 12 12 N 1.34777 * 119.99859 * 180.02562 * 10 9 5 13 13 C 1.40132 * 120.00393 * 174.46488 * 12 10 9 14 14 C 1.38697 * 120.07459 * 335.20989 * 13 12 10 15 15 C 1.38192 * 120.02373 * 179.69968 * 14 13 12 16 16 C 1.38549 * 120.17488 * 0.60070 * 15 14 13 17 17 F 1.35100 * 119.92578 * 179.69957 * 16 15 14 18 18 C 1.38348 * 120.15007 * 359.67621 * 16 15 14 19 19 C 1.38742 * 119.97493 * 0.02592 * 18 16 15 20 20 O 1.35777 * 120.08645 * 179.97438 * 19 18 16 21 21 C 1.34802 * 117.00002 * 5.16968 * 20 19 18 22 22 H 1.08000 * 120.00164 * 354.97561 * 21 20 19 23 23 C 1.38643 * 120.00142 * 174.98556 * 21 20 19 24 24 N 1.31570 * 119.99805 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47400 * 89.99785 * 25 23 21 27 27 H 1.48501 * 109.47232 * 209.99807 * 25 23 21 28 28 H 1.48501 * 109.47459 * 329.99650 * 25 23 21 29 29 H 1.09002 * 109.47537 * 299.99642 * 1 2 3 30 30 H 1.09001 * 109.47437 * 59.99842 * 1 2 3 31 31 H 1.09004 * 109.47531 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47289 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47955 * 300.00018 * 3 2 1 34 34 H 1.09007 * 109.47310 * 60.00468 * 3 2 1 35 35 H 1.09004 * 109.47054 * 300.00125 * 4 2 1 36 36 H 1.09005 * 109.47610 * 59.99742 * 4 2 1 37 37 H 1.08999 * 109.47503 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.47521 * 295.00023 * 7 5 2 39 39 H 1.09002 * 109.46938 * 55.00198 * 7 5 2 40 40 H 1.00909 * 110.99602 * 56.04595 * 8 7 5 41 41 H 1.00895 * 111.00285 * 179.97438 * 8 7 5 42 42 H 0.96995 * 120.00376 * 335.00073 * 9 5 2 43 43 H 0.97005 * 119.99976 * 354.45526 * 12 10 9 44 44 H 1.08007 * 119.98332 * 0.02562 * 14 13 12 45 45 H 1.07994 * 119.91553 * 180.30061 * 15 14 13 46 46 H 1.07995 * 120.01321 * 180.02562 * 18 16 15 47 47 H 0.96997 * 120.00148 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2493 7 6 1.5300 -0.0001 2.4985 8 7 1.9186 -0.7588 3.6948 9 7 1.5517 -2.1025 1.2491 10 6 2.2285 -3.0565 1.9186 11 8 3.2417 -2.7698 2.5267 12 7 1.7796 -4.3273 1.9181 13 6 2.5423 -5.3401 2.5151 14 6 3.9157 -5.1931 2.6415 15 6 4.6659 -6.1898 3.2359 16 6 4.0517 -7.3434 3.6959 17 9 4.7909 -8.3172 4.2708 18 6 2.6831 -7.5000 3.5684 19 6 1.9229 -6.5006 2.9782 20 8 0.5796 -6.6523 2.8514 21 6 0.0316 -7.7476 3.4144 22 1 0.6648 -8.4968 3.8662 23 6 -1.3450 -7.9125 3.4134 24 7 -2.1165 -6.9996 2.8634 25 14 -2.1044 -9.4306 4.1930 26 1 -2.3868 -9.1626 5.6261 27 1 -3.3706 -9.7657 3.4933 28 1 -1.1596 -10.5707 4.0795 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7207 -1.2495 38 1 1.9646 0.9986 2.5445 39 1 0.4436 0.0781 2.4548 40 1 2.9172 -0.9006 3.7245 41 1 1.5935 -0.3024 4.5339 42 1 0.7413 -2.3304 0.7673 43 1 0.9285 -4.5409 1.5047 44 1 4.3981 -4.2970 2.2799 45 1 5.7345 -6.0714 3.3378 46 1 2.2065 -8.3999 3.9281 47 1 -3.0796 -7.1147 2.8630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841144993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:30 Heat of formation + Delta-G solvation = -96.050494 kcal Electronic energy + Delta-G solvation = -30419.549577 eV Core-core repulsion = 26130.847519 eV Total energy + Delta-G solvation = -4288.702058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.77005 -41.74719 -40.63411 -39.22905 -37.84576 -35.46289 -34.92309 -34.26994 -33.98028 -31.01327 -29.88552 -28.58821 -28.22790 -27.55332 -27.25147 -24.26708 -23.54625 -22.91709 -21.65791 -20.19900 -19.97977 -19.59196 -18.87213 -18.15296 -17.08110 -16.94568 -16.88061 -16.78606 -16.51570 -16.03315 -15.88281 -15.62144 -15.34853 -15.29576 -15.17656 -14.83561 -14.75587 -14.55407 -14.11895 -13.99535 -13.91516 -13.67437 -13.39049 -13.07761 -13.01808 -12.82448 -12.67656 -12.55930 -12.33476 -12.27174 -12.11876 -11.73236 -11.61436 -11.56397 -11.46421 -11.17009 -10.86806 -10.77021 -9.91498 -9.48422 -9.33714 -8.57170 -8.48037 -6.12950 0.30764 0.52402 1.37668 1.44800 1.52731 1.74839 2.16241 2.28766 2.79522 3.07073 3.23806 3.31141 3.48586 3.52690 3.83685 3.96031 4.00024 4.07902 4.20618 4.34283 4.39497 4.42793 4.53284 4.64996 4.69626 4.79796 4.82959 4.91362 4.99113 5.02731 5.06782 5.07132 5.09640 5.17510 5.28238 5.32599 5.35023 5.40428 5.46877 5.48332 5.65767 5.72447 5.96543 6.04624 6.18459 6.41536 6.67358 6.96920 7.10932 7.64112 7.74350 8.72917 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003485 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.587904 B = 8033.037897 C = 9837.486696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.071 0.929 7 C 0.048 3.952 8 N -0.858 5.858 9 N -0.716 5.716 10 C 0.717 3.283 11 O -0.595 6.595 12 N -0.671 5.671 13 C 0.097 3.903 14 C -0.065 4.065 15 C -0.198 4.198 16 C 0.111 3.889 17 F -0.147 7.147 18 C -0.262 4.262 19 C 0.122 3.878 20 O -0.206 6.206 21 C -0.414 4.414 22 H 0.097 0.903 23 C -0.010 4.010 24 N -0.906 5.906 25 Si 1.010 2.990 26 H -0.267 1.267 27 H -0.269 1.269 28 H -0.257 1.257 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.345 0.655 41 H 0.338 0.662 42 H 0.399 0.601 43 H 0.409 0.591 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.133 0.867 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 15.364 -6.572 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.197 4.197 5 C 0.072 3.928 6 H 0.090 0.910 7 C -0.084 4.084 8 N -0.390 5.390 9 N -0.370 5.370 10 C 0.418 3.582 11 O -0.475 6.475 12 N -0.317 5.317 13 C 0.000 4.000 14 C -0.086 4.086 15 C -0.218 4.218 16 C 0.091 3.909 17 F -0.126 7.126 18 C -0.283 4.283 19 C 0.069 3.931 20 O -0.111 6.111 21 C -0.490 4.490 22 H 0.114 0.886 23 C -0.209 4.209 24 N -0.543 5.543 25 Si 0.830 3.170 26 H -0.193 1.193 27 H -0.193 1.193 28 H -0.181 1.181 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.235 0.765 43 H 0.244 0.756 44 H 0.178 0.822 45 H 0.173 0.827 46 H 0.151 0.849 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.181 15.260 -6.518 17.707 hybrid contribution -0.738 -0.542 0.565 1.076 sum 5.443 14.718 -5.953 16.783 Atomic orbital electron populations 1.21985 0.93685 1.01836 1.02926 1.20746 0.96493 0.96342 0.93230 1.21884 1.01239 0.93432 1.03034 1.21850 1.00903 1.00060 0.96904 1.20963 0.98474 0.78985 0.94376 0.91047 1.22393 1.00934 0.94692 0.90341 1.58605 1.21021 1.54759 1.04584 1.44912 1.29651 1.07669 1.54792 1.15728 0.83339 0.79717 0.79429 1.90696 1.27456 1.81055 1.48293 1.42311 1.24198 1.05565 1.59605 1.16959 0.90927 0.87631 1.04466 1.20989 0.89989 0.99360 0.98216 1.20877 1.01508 0.93062 1.06324 1.17446 0.88207 0.87116 0.98174 1.91414 1.76711 1.61850 1.82621 1.20885 0.93123 1.02498 1.11747 1.19065 0.85040 0.93612 0.95386 1.83879 1.15366 1.43915 1.67967 1.21715 0.91463 0.97973 1.37856 0.88553 1.26352 0.95035 1.02221 0.97279 1.70124 1.05391 1.35712 1.43073 0.84694 0.78032 0.76171 0.78069 1.19255 1.19339 1.18092 0.91894 0.90901 0.93290 0.92390 0.90891 0.91754 0.93383 0.91039 0.92961 0.93223 0.90836 0.84027 0.84921 0.76477 0.75634 0.82199 0.82673 0.84898 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 7.96 71.98 0.57 -1.52 16 2 C -0.07 -1.00 0.59 -52.19 -0.03 -1.03 16 3 C -0.14 -1.58 8.12 71.98 0.58 -1.00 16 4 C -0.14 -2.15 8.32 71.98 0.60 -1.55 16 5 C 0.18 3.69 1.65 44.99 0.07 3.77 16 6 H 0.07 1.71 7.58 -2.39 -0.02 1.70 16 7 C 0.05 0.98 5.76 86.30 0.50 1.48 16 8 N -0.86 -22.43 8.03 -186.71 -1.50 -23.93 16 9 N -0.72 -18.48 4.26 -457.81 -1.95 -20.43 16 10 C 0.72 24.45 7.65 179.05 1.37 25.82 16 11 O -0.60 -22.00 10.94 -4.01 -0.04 -22.04 16 12 N -0.67 -25.80 5.30 -316.69 -1.68 -27.48 16 13 C 0.10 4.13 6.45 38.22 0.25 4.37 16 14 C -0.06 -2.46 8.71 22.37 0.19 -2.27 16 15 C -0.20 -7.10 10.02 22.33 0.22 -6.88 16 16 C 0.11 4.43 7.29 22.37 0.16 4.59 16 17 F -0.15 -5.57 17.26 44.97 0.78 -4.79 16 18 C -0.26 -11.90 9.14 22.42 0.20 -11.69 16 19 C 0.12 5.93 6.66 22.69 0.15 6.08 16 20 O -0.21 -11.41 9.17 -22.75 -0.21 -11.62 16 21 C -0.41 -23.05 9.49 67.92 0.64 -22.41 16 22 H 0.10 5.07 5.20 -2.91 -0.02 5.05 16 23 C -0.01 -0.51 5.49 84.83 0.47 -0.05 16 24 N -0.91 -51.81 13.67 21.61 0.30 -51.51 16 25 Si 1.01 41.65 29.55 68.60 2.03 43.68 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 27 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 28 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 29 H 0.06 0.89 6.32 -2.39 -0.02 0.87 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.79 6.50 -2.39 -0.02 0.78 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.69 6.54 -2.38 -0.02 0.67 16 35 H 0.05 0.85 7.45 -2.39 -0.02 0.83 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.82 6.71 -2.38 -0.02 0.80 16 39 H 0.07 1.50 6.17 -2.39 -0.01 1.48 16 40 H 0.35 9.78 7.48 -89.69 -0.67 9.11 16 41 H 0.34 7.75 9.08 -89.70 -0.81 6.94 16 42 H 0.40 9.44 6.67 -92.71 -0.62 8.82 16 43 H 0.41 15.82 8.36 -92.70 -0.77 15.05 16 44 H 0.16 5.81 5.79 -2.91 -0.02 5.79 16 45 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.13 6.14 5.63 -2.91 -0.02 6.13 16 47 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.46 375.38 1.87 -63.59 By element: Atomic # 1 Polarization: 58.61 SS G_CDS: -1.81 Total: 56.80 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.96 Total: -2.27 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.83 Total: -123.35 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.25 Total: -33.66 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -65.46 1.87 -63.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841144993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.459 kcal (2) G-P(sol) polarization free energy of solvation -65.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds